data_8V6M # _model_server_result.job_id -jtLjhnOxS7EkiHq8EAJNg _model_server_result.datetime_utc '2024-11-16 19:41:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":903}' # _entry.id 8V6M # _exptl.entry_id 8V6M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 286.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tetrahydrocannabivarin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V6M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 N N N ? 3 R N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 612 A CYS 612 1_555 A SG CYS 619 A CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 721 A CYS 721 1_555 A SG CYS 731 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 612 B CYS 612 1_555 B SG CYS 619 B CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 721 B CYS 721 1_555 B SG CYS 731 B CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 612 C CYS 612 1_555 C SG CYS 619 C CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 721 C CYS 721 1_555 C SG CYS 731 C CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 612 D CYS 612 1_555 D SG CYS 619 D CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 721 D CYS 721 1_555 D SG CYS 731 D CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O GLY 638 A GLY 638 1_555 I NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc2 I NA NA . A NA 905 1_555 B O GLY 638 B GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc3 I NA NA . A NA 905 1_555 C O GLY 638 C GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc4 I NA NA . A NA 905 1_555 D O GLY 638 D GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? # _chem_comp.formula 'C19 H26 O2' _chem_comp.formula_weight 286.409 _chem_comp.id I8E _chem_comp.mon_nstd_flag . _chem_comp.name Tetrahydrocannabivarin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (6aR,10aR)-6,6,9-trimethyl-3-propyl-6a,7,8,10a-tetrahydro-6H-dibenzo[b,d]pyran-1-ol;THCV;THV;O-4394;GWP42004 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I8E sing 150 n n C2 C3 I8E sing 151 n n C3 C4 I8E sing 152 n n C4 C5 I8E doub 153 n y C4 C17 I8E sing 154 n y C5 C6 I8E sing 155 n y O21 C6 I8E sing 156 n n C17 C16 I8E doub 157 n y C6 C7 I8E doub 158 n y C16 C7 I8E sing 159 n y C16 O15 I8E sing 160 n n C7 C8 I8E sing 161 n n C18 C14 I8E sing 162 n n O15 C14 I8E sing 163 n n C8 C9 I8E sing 164 n n C8 C13 I8E sing 165 n n C14 C13 I8E sing 166 n n C14 C19 I8E sing 167 n n C9 C10 I8E doub 168 n n C13 C12 I8E sing 169 n n C10 C20 I8E sing 170 n n C10 C11 I8E sing 171 n n C12 C11 I8E sing 172 n n C1 H1A I8E sing 173 n n C1 H1C I8E sing 174 n n C1 H1B I8E sing 175 n n C11 H11B I8E sing 176 n n C11 H11A I8E sing 177 n n C12 H12A I8E sing 178 n n C12 H12B I8E sing 179 n n C13 H13 I8E sing 180 n n C17 H17 I8E sing 181 n n C18 H18C I8E sing 182 n n C18 H18B I8E sing 183 n n C18 H18A I8E sing 184 n n C19 H19A I8E sing 185 n n C19 H19C I8E sing 186 n n C19 H19B I8E sing 187 n n C2 H2B I8E sing 188 n n C2 H2A I8E sing 189 n n C20 H20C I8E sing 190 n n C20 H20B I8E sing 191 n n C20 H20A I8E sing 192 n n C3 H3B I8E sing 193 n n C3 H3A I8E sing 194 n n C5 H5 I8E sing 195 n n C8 H8 I8E sing 196 n n C9 H9 I8E sing 197 n n O21 H21 I8E sing 198 n n # _atom_sites.entry_id 8V6M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 901 803 POV POV . F 2 POV A 1 902 805 POV POV . G 3 I8E A 1 903 901 I8E THC . H 2 POV A 1 904 807 POV POV . I 4 NA A 1 905 1 NA NA . J 4 NA A 1 906 2 NA NA . K 4 NA A 1 907 3 NA NA . L 2 POV B 1 901 803 POV POV . M 2 POV B 1 902 805 POV POV . N 3 I8E B 1 903 901 I8E THC . O 2 POV B 1 904 807 POV POV . P 2 POV C 1 901 803 POV POV . Q 2 POV C 1 902 805 POV POV . R 3 I8E C 1 903 901 I8E THC . S 2 POV C 1 904 807 POV POV . T 2 POV D 1 901 807 POV POV . U 2 POV D 1 902 803 POV POV . V 2 POV D 1 903 805 POV POV . W 3 I8E D 1 904 901 I8E THC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I8E . . . N 3 126.83 111.807 82.711 1 52.73 ? C1 I8E 903 B 1 HETATM 2 C C10 I8E . . . N 3 130.06 108.663 76.354 1 52.73 ? C10 I8E 903 B 1 HETATM 3 C C11 I8E . . . N 3 130.029 107.189 76.077 1 52.73 ? C11 I8E 903 B 1 HETATM 4 C C12 I8E . . . N 3 129.888 106.299 77.313 1 52.73 ? C12 I8E 903 B 1 HETATM 5 C C13 I8E . . . N 3 129.403 107.072 78.545 1 52.73 ? C13 I8E 903 B 1 HETATM 6 C C14 I8E . . . N 3 129.179 106.239 79.81 1 52.73 ? C14 I8E 903 B 1 HETATM 7 C C16 I8E . . . N 3 129.133 108.376 81.009 1 52.73 ? C16 I8E 903 B 1 HETATM 8 C C17 I8E . . . N 3 128.762 109.008 82.181 1 52.73 ? C17 I8E 903 B 1 HETATM 9 C C18 I8E . . . N 3 130.461 105.659 80.384 1 52.73 ? C18 I8E 903 B 1 HETATM 10 C C19 I8E . . . N 3 128.15 105.14 79.613 1 52.73 ? C19 I8E 903 B 1 HETATM 11 C C2 I8E . . . N 3 127.451 111.187 83.949 1 52.73 ? C2 I8E 903 B 1 HETATM 12 C C20 I8E . . . N 3 129.923 109.563 75.16 1 52.73 ? C20 I8E 903 B 1 HETATM 13 C C3 I8E . . . N 3 128.936 110.923 83.808 1 52.73 ? C3 I8E 903 B 1 HETATM 14 C C4 I8E . . . N 3 129.338 110.221 82.534 1 52.73 ? C4 I8E 903 B 1 HETATM 15 C C5 I8E . . . N 3 130.279 110.788 81.687 1 52.73 ? C5 I8E 903 B 1 HETATM 16 C C6 I8E . . . N 3 130.65 110.153 80.516 1 52.73 ? C6 I8E 903 B 1 HETATM 17 C C7 I8E . . . N 3 130.072 108.935 80.133 1 52.73 ? C7 I8E 903 B 1 HETATM 18 C C8 I8E . . . N 3 130.352 108.259 78.801 1 52.73 ? C8 I8E 903 B 1 HETATM 19 C C9 I8E . . . N 3 130.197 109.133 77.586 1 52.73 ? C9 I8E 903 B 1 HETATM 20 O O15 I8E . . . N 3 128.586 107.128 80.818 1 52.73 ? O15 I8E 903 B 1 HETATM 21 O O21 I8E . . . N 3 131.657 110.738 79.812 1 52.73 ? O21 I8E 903 B 1 HETATM 22 H H1A I8E . . . N 3 125.936 112.139 82.929 1 52.73 ? H1A I8E 903 B 1 HETATM 23 H H1C I8E . . . N 3 126.733 111.155 81.987 1 52.73 ? H1C I8E 903 B 1 HETATM 24 H H1B I8E . . . N 3 127.365 112.555 82.377 1 52.73 ? H1B I8E 903 B 1 HETATM 25 H H11B I8E . . . N 3 130.864 106.956 75.623 1 52.73 ? H11B I8E 903 B 1 HETATM 26 H H11A I8E . . . N 3 129.3 106.984 75.457 1 52.73 ? H11A I8E 903 B 1 HETATM 27 H H12A I8E . . . N 3 129.28 105.569 77.081 1 52.73 ? H12A I8E 903 B 1 HETATM 28 H H12B I8E . . . N 3 130.757 105.889 77.499 1 52.73 ? H12B I8E 903 B 1 HETATM 29 H H13 I8E . . . N 3 128.52 107.438 78.334 1 52.73 ? H13 I8E 903 B 1 HETATM 30 H H17 I8E . . . N 3 128.087 108.59 82.755 1 52.73 ? H17 I8E 903 B 1 HETATM 31 H H18C I8E . . . N 3 130.986 106.299 80.906 1 52.73 ? H18C I8E 903 B 1 HETATM 32 H H18B I8E . . . N 3 131.041 105.287 79.69 1 52.73 ? H18B I8E 903 B 1 HETATM 33 H H18A I8E . . . N 3 130.244 104.935 81.003 1 52.73 ? H18A I8E 903 B 1 HETATM 34 H H19A I8E . . . N 3 127.942 104.671 80.446 1 52.73 ? H19A I8E 903 B 1 HETATM 35 H H19C I8E . . . N 3 128.469 104.474 78.971 1 52.73 ? H19C I8E 903 B 1 HETATM 36 H H19B I8E . . . N 3 127.32 105.502 79.241 1 52.73 ? H19B I8E 903 B 1 HETATM 37 H H2B I8E . . . N 3 126.984 110.356 84.168 1 52.73 ? H2B I8E 903 B 1 HETATM 38 H H2A I8E . . . N 3 127.303 111.795 84.701 1 52.73 ? H2A I8E 903 B 1 HETATM 39 H H20C I8E . . . N 3 130.802 109.881 74.871 1 52.73 ? H20C I8E 903 B 1 HETATM 40 H H20B I8E . . . N 3 129.369 110.339 75.383 1 52.73 ? H20B I8E 903 B 1 HETATM 41 H H20A I8E . . . N 3 129.507 109.106 74.402 1 52.73 ? H20A I8E 903 B 1 HETATM 42 H H3B I8E . . . N 3 129.243 110.39 84.569 1 52.73 ? H3B I8E 903 B 1 HETATM 43 H H3A I8E . . . N 3 129.424 111.769 83.866 1 52.73 ? H3A I8E 903 B 1 HETATM 44 H H5 I8E . . . N 3 130.68 111.646 81.931 1 52.73 ? H5 I8E 903 B 1 HETATM 45 H H8 I8E . . . N 3 131.282 107.955 78.826 1 52.73 ? H8 I8E 903 B 1 HETATM 46 H H9 I8E . . . N 3 130.193 110.103 77.719 1 52.73 ? H9 I8E 903 B 1 HETATM 47 H H21 I8E . . . N 3 131.864 110.312 79.117 1 52.73 ? H21 I8E 903 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 47 #