data_8V6M
#
_model_server_result.job_id            FN0LZyrJTug2jZ6N4gMX9g 
_model_server_result.datetime_utc      '2024-11-16 19:49:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v6m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":903}' 
#
_entry.id    8V6M 
#
_exptl.entry_id    8V6M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              286.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Tetrahydrocannabivarin 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8V6M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V6M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 N N N 
? 3 R N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 612 A CYS 612 1_555 A SG CYS 619 A CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 721 A CYS 721 1_555 A SG CYS 731 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 612 B CYS 612 1_555 B SG CYS 619 B CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 721 B CYS 721 1_555 B SG CYS 731 B CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 C SG CYS 612 C CYS 612 1_555 C SG CYS 619 C CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 C SG CYS 721 C CYS 721 1_555 C SG CYS 731 C CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 612 D CYS 612 1_555 D SG CYS 619 D CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 D SG CYS 721 D CYS 721 1_555 D SG CYS 731 D CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A O GLY 638 A GLY 638 1_555 I NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc2 I NA NA . A NA 905 1_555 B O GLY 638 B GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc3 I NA NA . A NA 905 1_555 C O GLY 638 C GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc4 I NA NA . A NA 905 1_555 D O GLY 638 D GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
#
_chem_comp.formula           'C19 H26 O2' 
_chem_comp.formula_weight    286.409 
_chem_comp.id                I8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Tetrahydrocannabivarin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (6aR,10aR)-6,6,9-trimethyl-3-propyl-6a,7,8,10a-tetrahydro-6H-dibenzo[b,d]pyran-1-ol;THCV;THV;O-4394;GWP42004 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 I8E sing 150 n n 
C2 C3 I8E sing 151 n n 
C3 C4 I8E sing 152 n n 
C4 C5 I8E doub 153 n y 
C4 C17 I8E sing 154 n y 
C5 C6 I8E sing 155 n y 
O21 C6 I8E sing 156 n n 
C17 C16 I8E doub 157 n y 
C6 C7 I8E doub 158 n y 
C16 C7 I8E sing 159 n y 
C16 O15 I8E sing 160 n n 
C7 C8 I8E sing 161 n n 
C18 C14 I8E sing 162 n n 
O15 C14 I8E sing 163 n n 
C8 C9 I8E sing 164 n n 
C8 C13 I8E sing 165 n n 
C14 C13 I8E sing 166 n n 
C14 C19 I8E sing 167 n n 
C9 C10 I8E doub 168 n n 
C13 C12 I8E sing 169 n n 
C10 C20 I8E sing 170 n n 
C10 C11 I8E sing 171 n n 
C12 C11 I8E sing 172 n n 
C1 H1A I8E sing 173 n n 
C1 H1C I8E sing 174 n n 
C1 H1B I8E sing 175 n n 
C11 H11B I8E sing 176 n n 
C11 H11A I8E sing 177 n n 
C12 H12A I8E sing 178 n n 
C12 H12B I8E sing 179 n n 
C13 H13 I8E sing 180 n n 
C17 H17 I8E sing 181 n n 
C18 H18C I8E sing 182 n n 
C18 H18B I8E sing 183 n n 
C18 H18A I8E sing 184 n n 
C19 H19A I8E sing 185 n n 
C19 H19C I8E sing 186 n n 
C19 H19B I8E sing 187 n n 
C2 H2B I8E sing 188 n n 
C2 H2A I8E sing 189 n n 
C20 H20C I8E sing 190 n n 
C20 H20B I8E sing 191 n n 
C20 H20A I8E sing 192 n n 
C3 H3B I8E sing 193 n n 
C3 H3A I8E sing 194 n n 
C5 H5 I8E sing 195 n n 
C8 H8 I8E sing 196 n n 
C9 H9 I8E sing 197 n n 
O21 H21 I8E sing 198 n n 
#
_atom_sites.entry_id                     8V6M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV A 1 901 803 POV POV . 
F 2 POV A 1 902 805 POV POV . 
G 3 I8E A 1 903 901 I8E THC . 
H 2 POV A 1 904 807 POV POV . 
I 4 NA A 1 905 1 NA NA . 
J 4 NA A 1 906 2 NA NA . 
K 4 NA A 1 907 3 NA NA . 
L 2 POV B 1 901 803 POV POV . 
M 2 POV B 1 902 805 POV POV . 
N 3 I8E B 1 903 901 I8E THC . 
O 2 POV B 1 904 807 POV POV . 
P 2 POV C 1 901 803 POV POV . 
Q 2 POV C 1 902 805 POV POV . 
R 3 I8E C 1 903 901 I8E THC . 
S 2 POV C 1 904 807 POV POV . 
T 2 POV D 1 901 807 POV POV . 
U 2 POV D 1 902 803 POV POV . 
V 2 POV D 1 903 805 POV POV . 
W 3 I8E D 1 904 901 I8E THC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I8E . . . R 3 100.653 126.827 82.705 1 50.63 ? C1 I8E 903 C 1 
HETATM 2 C C10 I8E . . . R 3 103.794 130.055 76.346 1 50.63 ? C10 I8E 903 C 1 
HETATM 3 C C11 I8E . . . R 3 105.268 130.024 76.069 1 50.63 ? C11 I8E 903 C 1 
HETATM 4 C C12 I8E . . . R 3 106.159 129.884 77.304 1 50.63 ? C12 I8E 903 C 1 
HETATM 5 C C13 I8E . . . R 3 105.386 129.399 78.537 1 50.63 ? C13 I8E 903 C 1 
HETATM 6 C C14 I8E . . . R 3 106.219 129.175 79.802 1 50.63 ? C14 I8E 903 C 1 
HETATM 7 C C16 I8E . . . R 3 104.083 129.13 81.001 1 50.63 ? C16 I8E 903 C 1 
HETATM 8 C C17 I8E . . . R 3 103.451 128.758 82.174 1 50.63 ? C17 I8E 903 C 1 
HETATM 9 C C18 I8E . . . R 3 106.799 130.458 80.375 1 50.63 ? C18 I8E 903 C 1 
HETATM 10 C C19 I8E . . . R 3 107.318 128.147 79.605 1 50.63 ? C19 I8E 903 C 1 
HETATM 11 C C2 I8E . . . R 3 101.272 127.448 83.943 1 50.63 ? C2 I8E 903 C 1 
HETATM 12 C C20 I8E . . . R 3 102.893 129.918 75.152 1 50.63 ? C20 I8E 903 C 1 
HETATM 13 C C3 I8E . . . R 3 101.536 128.933 83.801 1 50.63 ? C3 I8E 903 C 1 
HETATM 14 C C4 I8E . . . R 3 102.238 129.334 82.527 1 50.63 ? C4 I8E 903 C 1 
HETATM 15 C C5 I8E . . . R 3 101.671 130.275 81.68 1 50.63 ? C5 I8E 903 C 1 
HETATM 16 C C6 I8E . . . R 3 102.305 130.646 80.508 1 50.63 ? C6 I8E 903 C 1 
HETATM 17 C C7 I8E . . . R 3 103.523 130.068 80.125 1 50.63 ? C7 I8E 903 C 1 
HETATM 18 C C8 I8E . . . R 3 104.199 130.348 78.793 1 50.63 ? C8 I8E 903 C 1 
HETATM 19 C C9 I8E . . . R 3 103.324 130.192 77.579 1 50.63 ? C9 I8E 903 C 1 
HETATM 20 O O15 I8E . . . R 3 105.33 128.582 80.81 1 50.63 ? O15 I8E 903 C 1 
HETATM 21 O O21 I8E . . . R 3 101.72 131.652 79.805 1 50.63 ? O21 I8E 903 C 1 
HETATM 22 H H1A I8E . . . R 3 100.321 125.932 82.924 1 50.63 ? H1A I8E 903 C 1 
HETATM 23 H H1C I8E . . . R 3 101.304 126.729 81.981 1 50.63 ? H1C I8E 903 C 1 
HETATM 24 H H1B I8E . . . R 3 99.904 127.361 82.371 1 50.63 ? H1B I8E 903 C 1 
HETATM 25 H H11B I8E . . . R 3 105.5 130.859 75.615 1 50.63 ? H11B I8E 903 C 1 
HETATM 26 H H11A I8E . . . R 3 105.473 129.295 75.449 1 50.63 ? H11A I8E 903 C 1 
HETATM 27 H H12A I8E . . . R 3 106.889 129.276 77.072 1 50.63 ? H12A I8E 903 C 1 
HETATM 28 H H12B I8E . . . R 3 106.568 130.753 77.49 1 50.63 ? H12B I8E 903 C 1 
HETATM 29 H H13 I8E . . . R 3 105.02 128.516 78.326 1 50.63 ? H13 I8E 903 C 1 
HETATM 30 H H17 I8E . . . R 3 103.869 128.084 82.747 1 50.63 ? H17 I8E 903 C 1 
HETATM 31 H H18C I8E . . . R 3 106.159 130.983 80.897 1 50.63 ? H18C I8E 903 C 1 
HETATM 32 H H18B I8E . . . R 3 107.171 131.038 79.681 1 50.63 ? H18B I8E 903 C 1 
HETATM 33 H H18A I8E . . . R 3 107.523 130.241 80.995 1 50.63 ? H18A I8E 903 C 1 
HETATM 34 H H19A I8E . . . R 3 107.788 127.939 80.438 1 50.63 ? H19A I8E 903 C 1 
HETATM 35 H H19C I8E . . . R 3 107.984 128.465 78.963 1 50.63 ? H19C I8E 903 C 1 
HETATM 36 H H19B I8E . . . R 3 106.957 127.316 79.233 1 50.63 ? H19B I8E 903 C 1 
HETATM 37 H H2B I8E . . . R 3 102.103 126.981 84.161 1 50.63 ? H2B I8E 903 C 1 
HETATM 38 H H2A I8E . . . R 3 100.665 127.3 84.694 1 50.63 ? H2A I8E 903 C 1 
HETATM 39 H H20C I8E . . . R 3 102.577 130.796 74.862 1 50.63 ? H20C I8E 903 C 1 
HETATM 40 H H20B I8E . . . R 3 102.117 129.365 75.376 1 50.63 ? H20B I8E 903 C 1 
HETATM 41 H H20A I8E . . . R 3 103.351 129.501 74.395 1 50.63 ? H20A I8E 903 C 1 
HETATM 42 H H3B I8E . . . R 3 102.069 129.24 84.562 1 50.63 ? H3B I8E 903 C 1 
HETATM 43 H H3A I8E . . . R 3 100.69 129.421 83.859 1 50.63 ? H3A I8E 903 C 1 
HETATM 44 H H5 I8E . . . R 3 100.812 130.676 81.924 1 50.63 ? H5 I8E 903 C 1 
HETATM 45 H H8 I8E . . . R 3 104.502 131.278 78.818 1 50.63 ? H8 I8E 903 C 1 
HETATM 46 H H9 I8E . . . R 3 102.355 130.189 77.712 1 50.63 ? H9 I8E 903 C 1 
HETATM 47 H H21 I8E . . . R 3 102.146 131.859 79.109 1 50.63 ? H21 I8E 903 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           47 
#