data_8V6O
#
_model_server_result.job_id            BA6eIerTrL5Ptr1BZgETdA 
_model_server_result.datetime_utc      '2024-11-16 19:51:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v6o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":907}' 
#
_entry.id    8V6O 
#
_exptl.entry_id    8V6O 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              225.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-aminoethyl diphenylborinate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8V6O 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V6O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 X N N 
? 3 Y N N 
? 3 GA N N 
? 3 HA N N 
? 3 SA N N 
? 3 TA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 612 A CYS 612 1_555 A SG CYS 619 A CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 B SG CYS 612 B CYS 612 1_555 B SG CYS 619 B CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf3 C SG CYS 612 C CYS 612 1_555 C SG CYS 619 C CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf4 D SG CYS 612 D CYS 612 1_555 D SG CYS 619 D CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
#
_chem_comp.formula           'C14 H16 B N O' 
_chem_comp.formula_weight    225.094 
_chem_comp.id                FZ4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-aminoethyl diphenylborinate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C16 FZ4 sing 83 n n 
C15 O14 FZ4 sing 84 n n 
C16 N17 FZ4 sing 85 n n 
C06 C07 FZ4 doub 86 n y 
C06 C05 FZ4 sing 87 n y 
O14 B01 FZ4 sing 88 n n 
C07 C02 FZ4 sing 89 n y 
C05 C04 FZ4 doub 90 n y 
C02 B01 FZ4 sing 91 n n 
C02 C03 FZ4 doub 92 n y 
C04 C03 FZ4 sing 93 n y 
B01 C08 FZ4 sing 94 n n 
C08 C13 FZ4 doub 95 n y 
C08 C09 FZ4 sing 96 n y 
C13 C12 FZ4 sing 97 n y 
C09 C10 FZ4 doub 98 n y 
C12 C11 FZ4 doub 99 n y 
C10 C11 FZ4 sing 100 n y 
C03 H1 FZ4 sing 101 n n 
C04 H2 FZ4 sing 102 n n 
C05 H3 FZ4 sing 103 n n 
C06 H4 FZ4 sing 104 n n 
C07 H5 FZ4 sing 105 n n 
C09 H6 FZ4 sing 106 n n 
C10 H7 FZ4 sing 107 n n 
C11 H8 FZ4 sing 108 n n 
C12 H9 FZ4 sing 109 n n 
C13 H10 FZ4 sing 110 n n 
C15 H11 FZ4 sing 111 n n 
C15 H12 FZ4 sing 112 n n 
C16 H13 FZ4 sing 113 n n 
C16 H14 FZ4 sing 114 n n 
N17 H15 FZ4 sing 115 n n 
N17 H16 FZ4 sing 116 n n 
#
_atom_sites.entry_id                     8V6O 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV A 1 901 801 POV POV . 
F 2 POV A 1 902 803 POV POV . 
G 2 POV A 1 903 804 POV POV . 
H 2 POV A 1 904 805 POV POV . 
I 2 POV A 1 905 808 POV POV . 
J 3 FZ4 A 1 906 901 FZ4 LIG . 
K 3 FZ4 A 1 907 902 FZ4 LIG . 
L 2 POV A 1 908 806 POV POV . 
M 2 POV A 1 909 807 POV POV . 
N 2 POV A 1 910 802 POV POV . 
O 2 POV A 1 911 803 POV POV . 
P 4 NA A 1 912 2 NA NA . 
Q 4 NA A 1 913 3 NA NA . 
R 2 POV B 1 901 802 POV POV . 
S 2 POV B 1 902 801 POV POV . 
T 2 POV B 1 903 802 POV POV . 
U 2 POV B 1 904 804 POV POV . 
V 2 POV B 1 905 805 POV POV . 
W 2 POV B 1 906 808 POV POV . 
X 3 FZ4 B 1 907 901 FZ4 LIG . 
Y 3 FZ4 B 1 908 902 FZ4 LIG . 
Z 2 POV B 1 909 806 POV POV . 
AA 2 POV B 1 910 807 POV POV . 
BA 2 POV C 1 901 803 POV POV . 
CA 2 POV C 1 902 801 POV POV . 
DA 2 POV C 1 903 804 POV POV . 
EA 2 POV C 1 904 805 POV POV . 
FA 2 POV C 1 905 808 POV POV . 
GA 3 FZ4 C 1 906 901 FZ4 LIG . 
HA 3 FZ4 C 1 907 902 FZ4 LIG . 
IA 2 POV C 1 908 806 POV POV . 
JA 2 POV C 1 909 807 POV POV . 
KA 2 POV D 1 901 806 POV POV . 
LA 2 POV D 1 902 807 POV POV . 
MA 2 POV D 1 903 802 POV POV . 
NA 2 POV D 1 904 803 POV POV . 
OA 2 POV D 1 905 801 POV POV . 
PA 2 POV D 1 906 804 POV POV . 
QA 2 POV D 1 907 805 POV POV . 
RA 2 POV D 1 908 808 POV POV . 
SA 3 FZ4 D 1 909 901 FZ4 LIG . 
TA 3 FZ4 D 1 910 902 FZ4 LIG . 
UA 4 NA D 1 911 1 NA NA . 
VA 5 HOH A 1 1001 812 HOH HOH . 
VA 5 HOH A 2 1002 815 HOH HOH . 
VA 5 HOH A 3 1003 813 HOH HOH . 
VA 5 HOH A 4 1004 818 HOH HOH . 
VA 5 HOH A 5 1005 822 HOH HOH . 
VA 5 HOH A 6 1006 820 HOH HOH . 
VA 5 HOH A 7 1007 821 HOH HOH . 
VA 5 HOH A 8 1008 814 HOH HOH . 
VA 5 HOH A 9 1009 816 HOH HOH . 
VA 5 HOH A 10 1010 816 HOH HOH . 
VA 5 HOH A 11 1011 817 HOH HOH . 
VA 5 HOH A 12 1012 819 HOH HOH . 
WA 5 HOH B 1 1001 812 HOH HOH . 
WA 5 HOH B 2 1002 815 HOH HOH . 
WA 5 HOH B 3 1003 813 HOH HOH . 
WA 5 HOH B 4 1004 818 HOH HOH . 
WA 5 HOH B 5 1005 820 HOH HOH . 
WA 5 HOH B 6 1006 821 HOH HOH . 
WA 5 HOH B 7 1007 814 HOH HOH . 
WA 5 HOH B 8 1008 816 HOH HOH . 
WA 5 HOH B 9 1009 817 HOH HOH . 
WA 5 HOH B 10 1010 819 HOH HOH . 
XA 5 HOH C 1 1001 812 HOH HOH . 
XA 5 HOH C 2 1002 813 HOH HOH . 
XA 5 HOH C 3 1003 818 HOH HOH . 
XA 5 HOH C 4 1004 822 HOH HOH . 
XA 5 HOH C 5 1005 820 HOH HOH . 
XA 5 HOH C 6 1006 814 HOH HOH . 
XA 5 HOH C 7 1007 821 HOH HOH . 
XA 5 HOH C 8 1008 817 HOH HOH . 
XA 5 HOH C 9 1009 819 HOH HOH . 
YA 5 HOH D 1 1001 812 HOH HOH . 
YA 5 HOH D 2 1002 815 HOH HOH . 
YA 5 HOH D 3 1003 813 HOH HOH . 
YA 5 HOH D 4 1004 815 HOH HOH . 
YA 5 HOH D 5 1005 818 HOH HOH . 
YA 5 HOH D 6 1006 822 HOH HOH . 
YA 5 HOH D 7 1007 822 HOH HOH . 
YA 5 HOH D 8 1008 821 HOH HOH . 
YA 5 HOH D 9 1009 820 HOH HOH . 
YA 5 HOH D 10 1010 816 HOH HOH . 
YA 5 HOH D 11 1011 814 HOH HOH . 
YA 5 HOH D 12 1012 817 HOH HOH . 
YA 5 HOH D 13 1013 819 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B01 FZ4 . . . X 3 85.075 82.676 102.444 1 10.73 ? B01 FZ4 907 B 1 
HETATM 2 C C02 FZ4 . . . X 3 86.396 81.817 102.453 1 10.73 ? C02 FZ4 907 B 1 
HETATM 3 C C03 FZ4 . . . X 3 86.457 80.681 103.247 1 10.73 ? C03 FZ4 907 B 1 
HETATM 4 C C04 FZ4 . . . X 3 87.61 79.915 103.278 1 10.73 ? C04 FZ4 907 B 1 
HETATM 5 C C05 FZ4 . . . X 3 88.707 80.289 102.52 1 10.73 ? C05 FZ4 907 B 1 
HETATM 6 C C06 FZ4 . . . X 3 88.65 81.42 101.723 1 10.73 ? C06 FZ4 907 B 1 
HETATM 7 C C07 FZ4 . . . X 3 87.497 82.185 101.693 1 10.73 ? C07 FZ4 907 B 1 
HETATM 8 C C08 FZ4 . . . X 3 83.89 82.12 103.321 1 10.73 ? C08 FZ4 907 B 1 
HETATM 9 C C09 FZ4 . . . X 3 82.969 81.244 102.773 1 10.73 ? C09 FZ4 907 B 1 
HETATM 10 C C10 FZ4 . . . X 3 81.929 80.757 103.55 1 10.73 ? C10 FZ4 907 B 1 
HETATM 11 C C11 FZ4 . . . X 3 81.813 81.145 104.875 1 10.73 ? C11 FZ4 907 B 1 
HETATM 12 C C12 FZ4 . . . X 3 82.735 82.022 105.426 1 10.73 ? C12 FZ4 907 B 1 
HETATM 13 C C13 FZ4 . . . X 3 83.774 82.509 104.648 1 10.73 ? C13 FZ4 907 B 1 
HETATM 14 C C15 FZ4 . . . X 3 85.151 84.809 101.225 1 10.73 ? C15 FZ4 907 B 1 
HETATM 15 C C16 FZ4 . . . X 3 85.662 86.207 101.575 1 10.73 ? C16 FZ4 907 B 1 
HETATM 16 N N17 FZ4 . . . X 3 85.838 86.999 100.371 1 10.73 ? N17 FZ4 907 B 1 
HETATM 17 O O14 FZ4 . . . X 3 85.193 84.019 102.383 1 10.73 ? O14 FZ4 907 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#