data_8V8D # _model_server_result.job_id gH5cawtmwYf6kdyeFIjLtw _model_server_result.datetime_utc '2024-10-26 02:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":601}' # _entry.id 8V8D # _exptl.entry_id 8V8D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 311.721 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(5-Chloro-2,4-dimethoxyphenyl)-N'-(5-methyl-3-isoxazolyl)-urea" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V8D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N ? 5 T N N ? 5 Y N N ? 5 DA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F NAG 1 F 1 NAG A 513 NAG 2 n F NAG 2 F 2 NAG A 514 NAG 2 n G NAG 1 G 1 NAG B 513 NAG 2 n G NAG 2 G 2 NAG B 514 NAG 2 n H NAG 1 H 1 NAG C 513 NAG 2 n H NAG 2 H 2 NAG C 514 NAG 2 n I NAG 1 I 1 NAG D 513 NAG 2 n I NAG 2 I 2 NAG D 514 NAG 2 n J NAG 1 J 1 NAG E 513 NAG 2 n J NAG 2 J 2 NAG E 514 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 127 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 189 A CYS 189 1_555 A SG CYS 190 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 127 B CYS 127 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 189 B CYS 189 1_555 B SG CYS 190 B CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 C SG CYS 127 C CYS 127 1_555 C SG CYS 141 C CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 C SG CYS 189 C CYS 189 1_555 C SG CYS 190 C CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 D SG CYS 127 D CYS 127 1_555 D SG CYS 141 D CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 D SG CYS 189 D CYS 189 1_555 D SG CYS 190 D CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 E SG CYS 127 E CYS 127 1_555 E SG CYS 141 E CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 E SG CYS 189 E CYS 189 1_555 E SG CYS 190 E CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 23 A ASN 23 1_555 L C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 67 A ASN 67 1_555 K C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 110 A ASN 110 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 23 B ASN 23 1_555 R C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 67 B ASN 67 1_555 Q C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 C ND2 ASN 23 C ASN 23 1_555 W C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 C ND2 ASN 67 C ASN 67 1_555 V C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 C ND2 ASN 110 C ASN 110 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 D ND2 ASN 23 D ASN 23 1_555 BA C1 NAG . D NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 D ND2 ASN 67 D ASN 67 1_555 AA C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 D ND2 ASN 110 D ASN 110 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 E ND2 ASN 23 E ASN 23 1_555 FA C1 NAG . E NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 E ND2 ASN 67 E ASN 67 1_555 EA C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 E ND2 ASN 110 E ASN 110 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale17 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale18 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale19 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale20 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 B O VAL 42 B VAL 42 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc2 B OE1 GLU 44 B GLU 44 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc3 B OE2 GLU 44 B GLU 44 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? metalc ? metalc4 C OE2 GLU 172 C GLU 172 1_555 U CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc5 C OH TYR 210 C TYR 210 1_555 U CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc6 D OE1 GLU 44 D GLU 44 1_555 Z CA CA . D CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc7 D OE2 GLU 44 D GLU 44 1_555 Z CA CA . D CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? # _chem_comp.formula 'C13 H14 Cl N3 O4' _chem_comp.formula_weight 311.721 _chem_comp.id I34 _chem_comp.mon_nstd_flag . _chem_comp.name "N-(5-Chloro-2,4-dimethoxyphenyl)-N'-(5-methyl-3-isoxazolyl)-urea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 O06 I34 sing 179 n n O06 C05 I34 sing 180 n n C05 C04 I34 doub 181 n y C05 C08 I34 sing 182 n y C04 C03 I34 sing 183 n y N09 C08 I34 sing 184 n n N09 C10 I34 sing 185 n n C08 C19 I34 doub 186 n y N12 C10 I34 sing 187 n n N12 C13 I34 sing 188 n n C14 C13 I34 sing 189 n y C14 C15 I34 doub 190 n y C03 O02 I34 sing 191 n n C03 C20 I34 doub 192 n y C10 O11 I34 doub 193 n n C01 O02 I34 sing 194 n n C13 N18 I34 doub 195 n y C19 C20 I34 sing 196 n y C15 C16 I34 sing 197 n n C15 O17 I34 sing 198 n y C20 CL1 I34 sing 199 n n N18 O17 I34 sing 200 n y C01 H1 I34 sing 201 n n C01 H2 I34 sing 202 n n C01 H3 I34 sing 203 n n C04 H4 I34 sing 204 n n C07 H5 I34 sing 205 n n C07 H6 I34 sing 206 n n C07 H7 I34 sing 207 n n C14 H8 I34 sing 208 n n C16 H9 I34 sing 209 n n C16 H10 I34 sing 210 n n C16 H11 I34 sing 211 n n C19 H12 I34 sing 212 n n N09 H13 I34 sing 213 n n N12 H14 I34 sing 214 n n # _atom_sites.entry_id 8V8D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 NAG A 1 601 512 NAG NAG . L 3 NAG A 1 602 510 NAG NAG . M 4 EPJ A 1 603 609 EPJ EPJ . N 5 I34 A 1 604 600 I34 I34 . O 5 I34 B 1 601 600 I34 I34 . P 6 CA B 1 602 504 CA CA . Q 3 NAG B 1 603 512 NAG NAG . R 3 NAG B 1 604 510 NAG NAG . S 4 EPJ B 1 605 609 EPJ EPJ . T 5 I34 C 1 601 600 I34 I34 . U 6 CA C 1 602 504 CA CA . V 3 NAG C 1 603 512 NAG NAG . W 3 NAG C 1 604 510 NAG NAG . X 4 EPJ C 1 605 609 EPJ EPJ . Y 5 I34 D 1 601 600 I34 I34 . Z 6 CA D 1 602 504 CA CA . AA 3 NAG D 1 603 512 NAG NAG . BA 3 NAG D 1 604 510 NAG NAG . CA 4 EPJ D 1 605 609 EPJ EPJ . DA 5 I34 D 1 606 600 I34 I34 . EA 3 NAG E 1 601 512 NAG NAG . FA 3 NAG E 1 602 510 NAG NAG . GA 4 EPJ E 1 603 609 EPJ EPJ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 I34 . . . O 5 138.85 149.289 127.153 1 91.61 ? C01 I34 601 B 1 HETATM 2 C C03 I34 . . . O 5 140.012 151.372 127.151 1 91.61 ? C03 I34 601 B 1 HETATM 3 C C04 I34 . . . O 5 140.038 151.424 128.533 1 91.61 ? C04 I34 601 B 1 HETATM 4 C C05 I34 . . . O 5 140.633 152.495 129.175 1 91.61 ? C05 I34 601 B 1 HETATM 5 C C07 I34 . . . O 5 139.793 151.995 131.353 1 91.61 ? C07 I34 601 B 1 HETATM 6 C C08 I34 . . . O 5 141.194 153.541 128.444 1 91.61 ? C08 I34 601 B 1 HETATM 7 C C10 I34 . . . O 5 142.359 155.724 128.709 1 91.61 ? C10 I34 601 B 1 HETATM 8 C C13 I34 . . . O 5 143.71 157.67 129.496 1 91.61 ? C13 I34 601 B 1 HETATM 9 C C14 I34 . . . O 5 144.048 158.296 128.281 1 91.61 ? C14 I34 601 B 1 HETATM 10 C C15 I34 . . . O 5 144.8 159.34 128.63 1 91.61 ? C15 I34 601 B 1 HETATM 11 C C16 I34 . . . O 5 145.504 160.405 127.87 1 91.61 ? C16 I34 601 B 1 HETATM 12 C C19 I34 . . . O 5 141.165 153.49 127.057 1 91.61 ? C19 I34 601 B 1 HETATM 13 C C20 I34 . . . O 5 140.583 152.412 126.426 1 91.61 ? C20 I34 601 B 1 HETATM 14 N N09 I34 . . . O 5 141.799 154.572 129.192 1 91.61 ? N09 I34 601 B 1 HETATM 15 N N12 I34 . . . O 5 142.963 156.513 129.674 1 91.61 ? N12 I34 601 B 1 HETATM 16 N N18 I34 . . . O 5 144.209 158.301 130.524 1 91.61 ? N18 I34 601 B 1 HETATM 17 O O02 I34 . . . O 5 139.46 150.353 126.431 1 91.61 ? O02 I34 601 B 1 HETATM 18 O O06 I34 . . . O 5 140.78 152.604 130.528 1 91.61 ? O06 I34 601 B 1 HETATM 19 O O11 I34 . . . O 5 142.321 156.071 127.532 1 91.61 ? O11 I34 601 B 1 HETATM 20 O O17 I34 . . . O 5 144.922 159.387 129.971 1 91.61 ? O17 I34 601 B 1 HETATM 21 CL CL1 I34 . . . O 5 140.577 152.356 124.695 1 91.61 ? CL1 I34 601 B 1 HETATM 22 H H1 I34 . . . O 5 138.459 148.559 126.446 1 91.61 ? H1 I34 601 B 1 HETATM 23 H H2 I34 . . . O 5 139.596 148.822 127.794 1 91.61 ? H2 I34 601 B 1 HETATM 24 H H3 I34 . . . O 5 138.039 149.691 127.759 1 91.61 ? H3 I34 601 B 1 HETATM 25 H H4 I34 . . . O 5 139.592 150.626 129.112 1 91.61 ? H4 I34 601 B 1 HETATM 26 H H5 I34 . . . O 5 140.048 152.168 132.397 1 91.61 ? H5 I34 601 B 1 HETATM 27 H H6 I34 . . . O 5 138.823 152.436 131.13 1 91.61 ? H6 I34 601 B 1 HETATM 28 H H7 I34 . . . O 5 139.771 150.926 131.148 1 91.61 ? H7 I34 601 B 1 HETATM 29 H H8 I34 . . . O 5 143.76 157.995 127.282 1 91.61 ? H8 I34 601 B 1 HETATM 30 H H9 I34 . . . O 5 146.008 161.067 128.572 1 91.61 ? H9 I34 601 B 1 HETATM 31 H H10 I34 . . . O 5 146.233 159.944 127.206 1 91.61 ? H10 I34 601 B 1 HETATM 32 H H11 I34 . . . O 5 144.775 160.967 127.288 1 91.61 ? H11 I34 601 B 1 HETATM 33 H H12 I34 . . . O 5 141.597 154.293 126.474 1 91.61 ? H12 I34 601 B 1 HETATM 34 H H13 I34 . . . O 5 141.822 154.446 130.2 1 91.61 ? H13 I34 601 B 1 HETATM 35 H H14 I34 . . . O 5 142.844 156.206 130.635 1 91.61 ? H14 I34 601 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #