data_8V8I
#
_model_server_result.job_id            lK2dWAOetGfvkzVOAYAdEA 
_model_server_result.datetime_utc      '2024-11-05 04:53:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v8i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1101}' 
#
_entry.id    8V8I 
#
_exptl.entry_id    8V8I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              469.555 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.57 
_cell.angle_gamma         90 
_cell.entry_id            8V8I 
_cell.length_a            83.56 
_cell.length_b            124.07 
_cell.length_c            166.47 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V8I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,J 1 1 
C,D,G,H,I,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
_chem_comp.formula           'C27 H23 N3 O3 S' 
_chem_comp.formula_weight    469.555 
_chem_comp.id                YOR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C24 YOR doub 427 n y 
C23 C22 YOR sing 428 n y 
C24 C25 YOR sing 429 n y 
C22 C21 YOR doub 430 n y 
C25 C26 YOR doub 431 n y 
C21 C26 YOR sing 432 n y 
C21 S YOR sing 433 n y 
C26 C19 YOR sing 434 n y 
S C20 YOR sing 435 n y 
O3 C18 YOR doub 436 n n 
C19 C20 YOR doub 437 n y 
C19 C18 YOR sing 438 n n 
C18 N3 YOR sing 439 n n 
C1 C2 YOR sing 440 n n 
N3 C17 YOR sing 441 n n 
C2 C3 YOR doub 442 n y 
C2 C7 YOR sing 443 n y 
C17 C27 YOR doub 444 n y 
C17 C16 YOR sing 445 n y 
C8 C27 YOR sing 446 n n 
C8 C7 YOR sing 447 n n 
C8 N1 YOR sing 448 n n 
C27 C10 YOR sing 449 n y 
C16 C12 YOR doub 450 n y 
C3 C4 YOR sing 451 n y 
C7 C6 YOR doub 452 n y 
N1 C9 YOR sing 453 n n 
C10 C9 YOR sing 454 n n 
C10 C11 YOR doub 455 n y 
C12 C11 YOR sing 456 n y 
C12 N2 YOR sing 457 n n 
C9 O1 YOR doub 458 n n 
N2 C13 YOR sing 459 n n 
C4 C5 YOR doub 460 n y 
C6 C5 YOR sing 461 n y 
C13 C14 YOR sing 462 n n 
C13 C15 YOR sing 463 n n 
C14 O2 YOR sing 464 n n 
C15 O2 YOR sing 465 n n 
N1 H1 YOR sing 466 n n 
N3 H2 YOR sing 467 n n 
C4 H3 YOR sing 468 n n 
C5 H4 YOR sing 469 n n 
C6 H5 YOR sing 470 n n 
C8 H6 YOR sing 471 n n 
C13 H7 YOR sing 472 n n 
C15 H8 YOR sing 473 n n 
C15 H9 YOR sing 474 n n 
C20 H10 YOR sing 475 n n 
C22 H11 YOR sing 476 n n 
C24 H12 YOR sing 477 n n 
C1 H13 YOR sing 478 n n 
C1 H14 YOR sing 479 n n 
C1 H15 YOR sing 480 n n 
C3 H16 YOR sing 481 n n 
C11 H17 YOR sing 482 n n 
N2 H18 YOR sing 483 n n 
C14 H19 YOR sing 484 n n 
C14 H20 YOR sing 485 n n 
C16 H21 YOR sing 486 n n 
C23 H22 YOR sing 487 n n 
C25 H23 YOR sing 488 n n 
#
_atom_sites.entry_id                     8V8I 
_atom_sites.fract_transf_matrix[1][1]    0.011967 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000746 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00806 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 YOR A 1 1101 1 YOR LIG . 
F 4 YNZ A 1 1102 1 YNZ LG1 . 
G 3 YOR C 1 1101 2 YOR LIG . 
H 4 YNZ C 1 1102 2 YNZ LG1 . 
I 5 CL C 1 1103 1 CL CL . 
J 6 HOH A 1 1201 19 HOH HOH . 
J 6 HOH A 2 1202 29 HOH HOH . 
J 6 HOH A 3 1203 20 HOH HOH . 
J 6 HOH A 4 1204 22 HOH HOH . 
J 6 HOH A 5 1205 21 HOH HOH . 
J 6 HOH A 6 1206 9 HOH HOH . 
J 6 HOH A 7 1207 8 HOH HOH . 
J 6 HOH A 8 1208 7 HOH HOH . 
J 6 HOH A 9 1209 3 HOH HOH . 
J 6 HOH A 10 1210 23 HOH HOH . 
J 6 HOH A 11 1211 15 HOH HOH . 
J 6 HOH A 12 1212 24 HOH HOH . 
K 6 HOH C 1 1201 1 HOH HOH . 
K 6 HOH C 2 1202 16 HOH HOH . 
K 6 HOH C 3 1203 28 HOH HOH . 
K 6 HOH C 4 1204 6 HOH HOH . 
K 6 HOH C 5 1205 2 HOH HOH . 
K 6 HOH C 6 1206 10 HOH HOH . 
K 6 HOH C 7 1207 11 HOH HOH . 
K 6 HOH C 8 1208 5 HOH HOH . 
K 6 HOH C 9 1209 26 HOH HOH . 
K 6 HOH C 10 1210 4 HOH HOH . 
K 6 HOH C 11 1211 18 HOH HOH . 
K 6 HOH C 12 1212 30 HOH HOH . 
K 6 HOH C 13 1213 17 HOH HOH . 
K 6 HOH C 14 1214 25 HOH HOH . 
K 6 HOH C 15 1215 12 HOH HOH . 
K 6 HOH C 16 1216 13 HOH HOH . 
K 6 HOH C 17 1217 27 HOH HOH . 
L 6 HOH D 1 701 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 YOR . . . E 3 -22.654 -24.766 11.675 1 81.41 ? N1 YOR 1101 A 1 
HETATM 2 N N3 YOR . . . E 3 -18.924 -22.69 10.4 1 81.04 ? N3 YOR 1101 A 1 
HETATM 3 C C4 YOR . . . E 3 -22.127 -19.778 12.536 1 82.44 ? C4 YOR 1101 A 1 
HETATM 4 C C5 YOR . . . E 3 -21.208 -20.627 13.128 1 81.96 ? C5 YOR 1101 A 1 
HETATM 5 C C6 YOR . . . E 3 -21.07 -21.927 12.668 1 81.58 ? C6 YOR 1101 A 1 
HETATM 6 C C7 YOR . . . E 3 -21.853 -22.392 11.614 1 81.76 ? C7 YOR 1101 A 1 
HETATM 7 C C8 YOR . . . E 3 -21.705 -23.81 11.086 1 81.24 ? C8 YOR 1101 A 1 
HETATM 8 C C10 YOR . . . E 3 -20.518 -25.622 11.96 1 80.79 ? C10 YOR 1101 A 1 
HETATM 9 C C13 YOR . . . E 3 -17.001 -27.819 13.241 1 80.04 ? C13 YOR 1101 A 1 
HETATM 10 C C15 YOR . . . E 3 -17.129 -27.429 14.724 1 79.89 ? C15 YOR 1101 A 1 
HETATM 11 C C17 YOR . . . E 3 -19.066 -23.939 11.019 1 80.69 ? C17 YOR 1101 A 1 
HETATM 12 C C20 YOR . . . E 3 -18.409 -20.132 9.114 1 80.58 ? C20 YOR 1101 A 1 
HETATM 13 C C21 YOR . . . E 3 -19.447 -19.333 6.985 1 80.63 ? C21 YOR 1101 A 1 
HETATM 14 C C22 YOR . . . E 3 -19.943 -18.723 5.826 1 80.68 ? C22 YOR 1101 A 1 
HETATM 15 C C24 YOR . . . E 3 -21.086 -20.742 5.242 1 80.04 ? C24 YOR 1101 A 1 
HETATM 16 C C26 YOR . . . E 3 -19.773 -20.663 7.278 1 80.66 ? C26 YOR 1101 A 1 
HETATM 17 C C1 YOR . . . E 3 -23.653 -21.955 9.872 1 82.58 ? C1 YOR 1101 A 1 
HETATM 18 C C2 YOR . . . E 3 -22.771 -21.525 11.019 1 82.59 ? C2 YOR 1101 A 1 
HETATM 19 C C3 YOR . . . E 3 -22.904 -20.227 11.485 1 82.68 ? C3 YOR 1101 A 1 
HETATM 20 C C9 YOR . . . E 3 -21.967 -25.822 12.153 1 81.38 ? C9 YOR 1101 A 1 
HETATM 21 O O1 YOR . . . E 3 -22.465 -26.785 12.704 1 81.26 ? O1 YOR 1101 A 1 
HETATM 22 C C11 YOR . . . E 3 -19.403 -26.392 12.305 1 80.3 ? C11 YOR 1101 A 1 
HETATM 23 C C12 YOR . . . E 3 -18.119 -25.932 12.008 1 80.25 ? C12 YOR 1101 A 1 
HETATM 24 N N2 YOR . . . E 3 -16.97 -26.672 12.325 1 80.25 ? N2 YOR 1101 A 1 
HETATM 25 C C14 YOR . . . E 3 -15.604 -28.347 13.621 1 79.88 ? C14 YOR 1101 A 1 
HETATM 26 O O2 YOR . . . E 3 -16.134 -28.446 14.958 1 79.7 ? O2 YOR 1101 A 1 
HETATM 27 C C16 YOR . . . E 3 -17.958 -24.702 11.37 1 80.56 ? C16 YOR 1101 A 1 
HETATM 28 C C18 YOR . . . E 3 -19.302 -22.45 9.122 1 81.23 ? C18 YOR 1101 A 1 
HETATM 29 O O3 YOR . . . E 3 -19.77 -23.359 8.46 1 81.6 ? O3 YOR 1101 A 1 
HETATM 30 C C19 YOR . . . E 3 -19.144 -21.099 8.536 1 81.04 ? C19 YOR 1101 A 1 
HETATM 31 S S YOR . . . E 3 -18.407 -18.68 8.237 1 80.27 ? S YOR 1101 A 1 
HETATM 32 C C23 YOR . . . E 3 -20.756 -19.424 4.965 1 80.37 ? C23 YOR 1101 A 1 
HETATM 33 C C25 YOR . . . E 3 -20.609 -21.358 6.376 1 80.17 ? C25 YOR 1101 A 1 
HETATM 34 C C27 YOR . . . E 3 -20.334 -24.388 11.332 1 80.81 ? C27 YOR 1101 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#