data_8V8J # _model_server_result.job_id Nj1WOpqzQ8KGCgRbpEqkBw _model_server_result.datetime_utc '2024-11-23 21:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 8V8J # _exptl.entry_id 8V8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 448.554 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-({(1R)-1-[2-(4,4-dimethylpiperidin-1-yl)-3,6-dimethyl-4-oxo-4H-1-benzopyran-8-yl]ethyl}amino)benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.83 _cell.angle_gamma 90 _cell.entry_id 8V8J _cell.length_a 236.94 _cell.length_b 158.48 _cell.length_c 121.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C27 H32 N2 O4' _chem_comp.formula_weight 448.554 _chem_comp.id YO4 _chem_comp.mon_nstd_flag . _chem_comp.name '2-({(1R)-1-[2-(4,4-dimethylpiperidin-1-yl)-3,6-dimethyl-4-oxo-4H-1-benzopyran-8-yl]ethyl}amino)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 YO4 doub 425 n n C1 O2 YO4 sing 426 n n C1 C2 YO4 sing 427 n n C2 C3 YO4 doub 428 n y C2 C27 YO4 sing 429 n y C3 N1 YO4 sing 430 n n C3 C24 YO4 sing 431 n y N1 C4 YO4 sing 432 n n C4 C5 YO4 sing 433 n n C4 C6 YO4 sing 434 n n C6 C7 YO4 doub 435 n y C6 C23 YO4 sing 436 n y C7 O3 YO4 sing 437 n n C7 C19 YO4 sing 438 n y O3 C8 YO4 sing 439 n n C8 N2 YO4 sing 440 n n C8 C16 YO4 doub 441 n n N2 C9 YO4 sing 442 n n N2 C15 YO4 sing 443 n n C9 C10 YO4 sing 444 n n C10 C11 YO4 sing 445 n n C11 C12 YO4 sing 446 n n C11 C13 YO4 sing 447 n n C11 C14 YO4 sing 448 n n C14 C15 YO4 sing 449 n n C16 C17 YO4 sing 450 n n C16 C18 YO4 sing 451 n n C18 O4 YO4 doub 452 n n C18 C19 YO4 sing 453 n n C19 C20 YO4 doub 454 n y C20 C21 YO4 sing 455 n y C21 C22 YO4 sing 456 n n C21 C23 YO4 doub 457 n y C24 C25 YO4 doub 458 n y C25 C26 YO4 sing 459 n y C26 C27 YO4 doub 460 n y C10 H1 YO4 sing 461 n n C10 H2 YO4 sing 462 n n C14 H3 YO4 sing 463 n n C14 H4 YO4 sing 464 n n C20 H5 YO4 sing 465 n n C22 H6 YO4 sing 466 n n C22 H7 YO4 sing 467 n n C22 H8 YO4 sing 468 n n C23 H9 YO4 sing 469 n n C12 H10 YO4 sing 470 n n C12 H11 YO4 sing 471 n n C12 H12 YO4 sing 472 n n C13 H13 YO4 sing 473 n n C13 H14 YO4 sing 474 n n C13 H15 YO4 sing 475 n n C15 H16 YO4 sing 476 n n C15 H17 YO4 sing 477 n n C17 H18 YO4 sing 478 n n C17 H19 YO4 sing 479 n n C17 H20 YO4 sing 480 n n C24 H21 YO4 sing 481 n n C25 H22 YO4 sing 482 n n C26 H23 YO4 sing 483 n n C27 H24 YO4 sing 484 n n C4 H25 YO4 sing 485 n n C5 H26 YO4 sing 486 n n C5 H27 YO4 sing 487 n n C5 H28 YO4 sing 488 n n C9 H29 YO4 sing 489 n n C9 H30 YO4 sing 490 n n N1 H31 YO4 sing 491 n n O2 H32 YO4 sing 492 n n # _atom_sites.entry_id 8V8J _atom_sites.fract_transf_matrix[1][1] 0.00422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001777 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 YO4 A 1 1101 1101 YO4 R07 . F 4 YOR A 1 1102 1 YOR LIG . G 5 YNZ A 1 1103 1 YNZ LG1 . H 3 YO4 C 1 1101 1101 YO4 R07 . I 4 YOR C 1 1102 2 YOR LIG . J 5 YNZ C 1 1103 2 YNZ LG1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 YO4 . . . E 3 65.295 -19.965 13.025 1 48.4 ? C10 YO4 1101 A 1 HETATM 2 C C14 YO4 . . . E 3 63.488 -21.392 14.059 1 59.39 ? C14 YO4 1101 A 1 HETATM 3 C C19 YO4 . . . E 3 66.319 -19.711 18.761 1 75.38 ? C19 YO4 1101 A 1 HETATM 4 C C20 YO4 . . . E 3 66.993 -19.825 19.967 1 77.35 ? C20 YO4 1101 A 1 HETATM 5 C C22 YO4 . . . E 3 68.471 -21.101 21.516 1 58.07 ? C22 YO4 1101 A 1 HETATM 6 C C23 YO4 . . . E 3 67.798 -21.964 19.28 1 86.36 ? C23 YO4 1101 A 1 HETATM 7 C C1 YO4 . . . E 3 68.387 -26.952 18.559 1 93.05 ? C1 YO4 1101 A 1 HETATM 8 C C11 YO4 . . . E 3 64.06 -20.835 12.755 1 54.41 ? C11 YO4 1101 A 1 HETATM 9 C C12 YO4 . . . E 3 64.478 -22.011 11.873 1 88.68 ? C12 YO4 1101 A 1 HETATM 10 C C13 YO4 . . . E 3 63.001 -20.024 12.012 1 72.22 ? C13 YO4 1101 A 1 HETATM 11 C C15 YO4 . . . E 3 63.113 -20.221 14.962 1 92.23 ? C15 YO4 1101 A 1 HETATM 12 C C16 YO4 . . . E 3 64.857 -18.431 17.245 1 91.38 ? C16 YO4 1101 A 1 HETATM 13 C C17 YO4 . . . E 3 64.039 -17.2 16.949 1 100.26 ? C17 YO4 1101 A 1 HETATM 14 C C18 YO4 . . . E 3 65.52 -18.505 18.473 1 85.85 ? C18 YO4 1101 A 1 HETATM 15 C C2 YO4 . . . E 3 67.04 -26.444 18.847 1 90.3 ? C2 YO4 1101 A 1 HETATM 16 C C21 YO4 . . . E 3 67.73 -20.955 20.218 1 83.94 ? C21 YO4 1101 A 1 HETATM 17 C C24 YO4 . . . E 3 65.401 -24.69 18.827 1 92.37 ? C24 YO4 1101 A 1 HETATM 18 C C25 YO4 . . . E 3 64.484 -25.545 19.402 1 102.48 ? C25 YO4 1101 A 1 HETATM 19 C C26 YO4 . . . E 3 64.832 -26.851 19.702 1 93.91 ? C26 YO4 1101 A 1 HETATM 20 C C27 YO4 . . . E 3 66.1 -27.301 19.427 1 81.67 ? C27 YO4 1101 A 1 HETATM 21 C C3 YO4 . . . E 3 66.693 -25.117 18.537 1 89.32 ? C3 YO4 1101 A 1 HETATM 22 C C4 YO4 . . . E 3 67.314 -23.075 17.147 1 81.24 ? C4 YO4 1101 A 1 HETATM 23 C C5 YO4 . . . E 3 68.368 -22.711 16.092 1 89.96 ? C5 YO4 1101 A 1 HETATM 24 C C6 YO4 . . . E 3 67.142 -21.881 18.076 1 87.36 ? C6 YO4 1101 A 1 HETATM 25 C C7 YO4 . . . E 3 66.386 -20.734 17.803 1 88.79 ? C7 YO4 1101 A 1 HETATM 26 C C8 YO4 . . . E 3 64.981 -19.473 16.38 1 85.1 ? C8 YO4 1101 A 1 HETATM 27 C C9 YO4 . . . E 3 64.948 -18.836 13.996 1 71.73 ? C9 YO4 1101 A 1 HETATM 28 N N1 YO4 . . . E 3 67.64 -24.267 17.954 1 82.18 ? N1 YO4 1101 A 1 HETATM 29 N N2 YO4 . . . E 3 64.37 -19.496 15.164 1 92.06 ? N2 YO4 1101 A 1 HETATM 30 O O1 YO4 . . . E 3 68.922 -27.699 19.354 1 75.16 ? O1 YO4 1101 A 1 HETATM 31 O O2 YO4 . . . E 3 69.021 -26.6 17.422 1 100.82 ? O2 YO4 1101 A 1 HETATM 32 O O3 YO4 . . . E 3 65.705 -20.559 16.66 1 84.82 ? O3 YO4 1101 A 1 HETATM 33 O O4 YO4 . . . E 3 65.437 -17.595 19.275 1 82.55 ? O4 YO4 1101 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #