data_8V8J
#
_model_server_result.job_id            4FxJ33TIjHdb31I23UC8GQ 
_model_server_result.datetime_utc      '2024-11-23 22:00:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1102}' 
#
_entry.id    8V8J 
#
_exptl.entry_id    8V8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              469.555 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.83 
_cell.angle_gamma         90 
_cell.entry_id            8V8J 
_cell.length_a            236.94 
_cell.length_b            158.48 
_cell.length_c            121.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G 1 1 
C,D,H,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
_chem_comp.formula           'C27 H23 N3 O3 S' 
_chem_comp.formula_weight    469.555 
_chem_comp.id                YOR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C24 YOR doub 493 n y 
C23 C22 YOR sing 494 n y 
C24 C25 YOR sing 495 n y 
C22 C21 YOR doub 496 n y 
C25 C26 YOR doub 497 n y 
C21 C26 YOR sing 498 n y 
C21 S YOR sing 499 n y 
C26 C19 YOR sing 500 n y 
S C20 YOR sing 501 n y 
O3 C18 YOR doub 502 n n 
C19 C20 YOR doub 503 n y 
C19 C18 YOR sing 504 n n 
C18 N3 YOR sing 505 n n 
C1 C2 YOR sing 506 n n 
N3 C17 YOR sing 507 n n 
C2 C3 YOR doub 508 n y 
C2 C7 YOR sing 509 n y 
C17 C27 YOR doub 510 n y 
C17 C16 YOR sing 511 n y 
C8 C27 YOR sing 512 n n 
C8 C7 YOR sing 513 n n 
C8 N1 YOR sing 514 n n 
C27 C10 YOR sing 515 n y 
C16 C12 YOR doub 516 n y 
C3 C4 YOR sing 517 n y 
C7 C6 YOR doub 518 n y 
N1 C9 YOR sing 519 n n 
C10 C9 YOR sing 520 n n 
C10 C11 YOR doub 521 n y 
C12 C11 YOR sing 522 n y 
C12 N2 YOR sing 523 n n 
C9 O1 YOR doub 524 n n 
N2 C13 YOR sing 525 n n 
C4 C5 YOR doub 526 n y 
C6 C5 YOR sing 527 n y 
C13 C14 YOR sing 528 n n 
C13 C15 YOR sing 529 n n 
C14 O2 YOR sing 530 n n 
C15 O2 YOR sing 531 n n 
N1 H1 YOR sing 532 n n 
N3 H2 YOR sing 533 n n 
C4 H3 YOR sing 534 n n 
C5 H4 YOR sing 535 n n 
C6 H5 YOR sing 536 n n 
C8 H6 YOR sing 537 n n 
C13 H7 YOR sing 538 n n 
C15 H8 YOR sing 539 n n 
C15 H9 YOR sing 540 n n 
C20 H10 YOR sing 541 n n 
C22 H11 YOR sing 542 n n 
C24 H12 YOR sing 543 n n 
C1 H13 YOR sing 544 n n 
C1 H14 YOR sing 545 n n 
C1 H15 YOR sing 546 n n 
C3 H16 YOR sing 547 n n 
C11 H17 YOR sing 548 n n 
N2 H18 YOR sing 549 n n 
C14 H19 YOR sing 550 n n 
C14 H20 YOR sing 551 n n 
C16 H21 YOR sing 552 n n 
C23 H22 YOR sing 553 n n 
C25 H23 YOR sing 554 n n 
#
_atom_sites.entry_id                     8V8J 
_atom_sites.fract_transf_matrix[1][1]    0.00422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001777 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008923 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 YO4 A 1 1101 1101 YO4 R07 . 
F 4 YOR A 1 1102 1 YOR LIG . 
G 5 YNZ A 1 1103 1 YNZ LG1 . 
H 3 YO4 C 1 1101 1101 YO4 R07 . 
I 4 YOR C 1 1102 2 YOR LIG . 
J 5 YNZ C 1 1103 2 YNZ LG1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 YOR . . . F 4 52.815 -17.998 3.861 1 86.19 ? N1 YOR 1102 A 1 
HETATM 2 N N3 YOR . . . F 4 54.247 -15.588 7.341 1 86.86 ? N3 YOR 1102 A 1 
HETATM 3 C C4 YOR . . . F 4 50.885 -18.83 8.462 1 45.78 ? C4 YOR 1102 A 1 
HETATM 4 C C5 YOR . . . F 4 52.197 -19.176 8.197 1 61.3 ? C5 YOR 1102 A 1 
HETATM 5 C C6 YOR . . . F 4 52.847 -18.641 7.099 1 69.69 ? C6 YOR 1102 A 1 
HETATM 6 C C7 YOR . . . F 4 52.18 -17.763 6.266 1 71.07 ? C7 YOR 1102 A 1 
HETATM 7 C C8 YOR . . . F 4 52.871 -17.16 5.066 1 70.3 ? C8 YOR 1102 A 1 
HETATM 8 C C10 YOR . . . F 4 55.039 -17.483 4.286 1 82.58 ? C10 YOR 1102 A 1 
HETATM 9 C C13 YOR . . . F 4 59.291 -17.385 4.328 1 76.32 ? C13 YOR 1102 A 1 
HETATM 10 C C15 YOR . . . F 4 59.831 -18.677 4.97 1 75.75 ? C15 YOR 1102 A 1 
HETATM 11 C C17 YOR . . . F 4 54.992 -16.167 6.309 1 88.77 ? C17 YOR 1102 A 1 
HETATM 12 C C20 YOR . . . F 4 52.952 -14.564 9.584 1 86.22 ? C20 YOR 1102 A 1 
HETATM 13 C C21 YOR . . . F 4 51.111 -12.87 9.64 1 81.04 ? C21 YOR 1102 A 1 
HETATM 14 C C22 YOR . . . F 4 50.076 -11.953 9.844 1 83.34 ? C22 YOR 1102 A 1 
HETATM 15 C C24 YOR . . . F 4 50.023 -11.474 7.501 1 87.15 ? C24 YOR 1102 A 1 
HETATM 16 C C26 YOR . . . F 4 51.602 -13.087 8.351 1 80.99 ? C26 YOR 1102 A 1 
HETATM 17 C C1 YOR . . . F 4 50.139 -16.451 5.63 1 74.5 ? C1 YOR 1102 A 1 
HETATM 18 C C2 YOR . . . F 4 50.868 -17.413 6.534 1 78.07 ? C2 YOR 1102 A 1 
HETATM 19 C C3 YOR . . . F 4 50.22 -17.949 7.63 1 70.65 ? C3 YOR 1102 A 1 
HETATM 20 C C9 YOR . . . F 4 54.068 -18.161 3.401 1 92.66 ? C9 YOR 1102 A 1 
HETATM 21 O O1 YOR . . . F 4 54.361 -18.811 2.416 1 96.03 ? O1 YOR 1102 A 1 
HETATM 22 C C11 YOR . . . F 4 56.432 -17.383 4.263 1 74.58 ? C11 YOR 1102 A 1 
HETATM 23 C C12 YOR . . . F 4 57.094 -16.675 5.257 1 78.91 ? C12 YOR 1102 A 1 
HETATM 24 N N2 YOR . . . F 4 58.487 -16.568 5.24 1 93.39 ? N2 YOR 1102 A 1 
HETATM 25 C C14 YOR . . . F 4 60.761 -16.932 4.234 1 90.93 ? C14 YOR 1102 A 1 
HETATM 26 O O2 YOR . . . F 4 61.1 -18.326 4.38 1 117.62 ? O2 YOR 1102 A 1 
HETATM 27 C C16 YOR . . . F 4 56.377 -16.072 6.284 1 88.87 ? C16 YOR 1102 A 1 
HETATM 28 C C18 YOR . . . F 4 53.407 -14.548 7.178 1 83.72 ? C18 YOR 1102 A 1 
HETATM 29 O O3 YOR . . . F 4 53.254 -14.034 6.086 1 83.93 ? O3 YOR 1102 A 1 
HETATM 30 C C19 YOR . . . F 4 52.68 -14.079 8.365 1 85.56 ? C19 YOR 1102 A 1 
HETATM 31 S S YOR . . . F 4 51.974 -13.88 10.791 1 77.08 ? S YOR 1102 A 1 
HETATM 32 C C23 YOR . . . F 4 49.539 -11.264 8.783 1 78.3 ? C23 YOR 1102 A 1 
HETATM 33 C C25 YOR . . . F 4 51.039 -12.37 7.28 1 89.46 ? C25 YOR 1102 A 1 
HETATM 34 C C27 YOR . . . F 4 54.331 -16.881 5.327 1 80.83 ? C27 YOR 1102 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           43 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#