data_8V8J
#
_model_server_result.job_id            V9vOmDu80TgF1F_ZrP4yhw 
_model_server_result.datetime_utc      '2024-11-23 21:24:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1102}' 
#
_entry.id    8V8J 
#
_exptl.entry_id    8V8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              469.555 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.83 
_cell.angle_gamma         90 
_cell.entry_id            8V8J 
_cell.length_a            236.94 
_cell.length_b            158.48 
_cell.length_c            121.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G 1 1 
C,D,H,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
_chem_comp.formula           'C27 H23 N3 O3 S' 
_chem_comp.formula_weight    469.555 
_chem_comp.id                YOR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C24 YOR doub 493 n y 
C23 C22 YOR sing 494 n y 
C24 C25 YOR sing 495 n y 
C22 C21 YOR doub 496 n y 
C25 C26 YOR doub 497 n y 
C21 C26 YOR sing 498 n y 
C21 S YOR sing 499 n y 
C26 C19 YOR sing 500 n y 
S C20 YOR sing 501 n y 
O3 C18 YOR doub 502 n n 
C19 C20 YOR doub 503 n y 
C19 C18 YOR sing 504 n n 
C18 N3 YOR sing 505 n n 
C1 C2 YOR sing 506 n n 
N3 C17 YOR sing 507 n n 
C2 C3 YOR doub 508 n y 
C2 C7 YOR sing 509 n y 
C17 C27 YOR doub 510 n y 
C17 C16 YOR sing 511 n y 
C8 C27 YOR sing 512 n n 
C8 C7 YOR sing 513 n n 
C8 N1 YOR sing 514 n n 
C27 C10 YOR sing 515 n y 
C16 C12 YOR doub 516 n y 
C3 C4 YOR sing 517 n y 
C7 C6 YOR doub 518 n y 
N1 C9 YOR sing 519 n n 
C10 C9 YOR sing 520 n n 
C10 C11 YOR doub 521 n y 
C12 C11 YOR sing 522 n y 
C12 N2 YOR sing 523 n n 
C9 O1 YOR doub 524 n n 
N2 C13 YOR sing 525 n n 
C4 C5 YOR doub 526 n y 
C6 C5 YOR sing 527 n y 
C13 C14 YOR sing 528 n n 
C13 C15 YOR sing 529 n n 
C14 O2 YOR sing 530 n n 
C15 O2 YOR sing 531 n n 
N1 H1 YOR sing 532 n n 
N3 H2 YOR sing 533 n n 
C4 H3 YOR sing 534 n n 
C5 H4 YOR sing 535 n n 
C6 H5 YOR sing 536 n n 
C8 H6 YOR sing 537 n n 
C13 H7 YOR sing 538 n n 
C15 H8 YOR sing 539 n n 
C15 H9 YOR sing 540 n n 
C20 H10 YOR sing 541 n n 
C22 H11 YOR sing 542 n n 
C24 H12 YOR sing 543 n n 
C1 H13 YOR sing 544 n n 
C1 H14 YOR sing 545 n n 
C1 H15 YOR sing 546 n n 
C3 H16 YOR sing 547 n n 
C11 H17 YOR sing 548 n n 
N2 H18 YOR sing 549 n n 
C14 H19 YOR sing 550 n n 
C14 H20 YOR sing 551 n n 
C16 H21 YOR sing 552 n n 
C23 H22 YOR sing 553 n n 
C25 H23 YOR sing 554 n n 
#
_atom_sites.entry_id                     8V8J 
_atom_sites.fract_transf_matrix[1][1]    0.00422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001777 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008923 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 YO4 A 1 1101 1101 YO4 R07 . 
F 4 YOR A 1 1102 1 YOR LIG . 
G 5 YNZ A 1 1103 1 YNZ LG1 . 
H 3 YO4 C 1 1101 1101 YO4 R07 . 
I 4 YOR C 1 1102 2 YOR LIG . 
J 5 YNZ C 1 1103 2 YNZ LG1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 YOR . . . I 4 54.026 17.429 70.539 1 93.07 ? N1 YOR 1102 C 1 
HETATM 2 N N3 YOR . . . I 4 50.618 14.908 71.93 1 92.84 ? N3 YOR 1102 C 1 
HETATM 3 C C4 YOR . . . I 4 51.882 18.049 75.132 1 75.82 ? C4 YOR 1102 C 1 
HETATM 4 C C5 YOR . . . I 4 51.165 18.378 73.997 1 75.98 ? C5 YOR 1102 C 1 
HETATM 5 C C6 YOR . . . I 4 51.568 17.901 72.764 1 86.37 ? C6 YOR 1102 C 1 
HETATM 6 C C7 YOR . . . I 4 52.695 17.108 72.667 1 79.81 ? C7 YOR 1102 C 1 
HETATM 7 C C8 YOR . . . I 4 53.145 16.561 71.332 1 92.7 ? C8 YOR 1102 C 1 
HETATM 8 C C10 YOR . . . I 4 52.209 16.827 69.22 1 103.08 ? C10 YOR 1102 C 1 
HETATM 9 C C13 YOR . . . I 4 49.048 16.786 66.336 1 104.01 ? C13 YOR 1102 C 1 
HETATM 10 C C15 YOR . . . I 4 47.763 17.631 66.438 1 91.59 ? C15 YOR 1102 C 1 
HETATM 11 C C17 YOR . . . I 4 50.822 15.477 70.667 1 94.64 ? C17 YOR 1102 C 1 
HETATM 12 C C20 YOR . . . I 4 50.072 13.949 74.519 1 77.18 ? C20 YOR 1102 C 1 
HETATM 13 C C21 YOR . . . I 4 51.288 12.159 75.764 1 72.73 ? C21 YOR 1102 C 1 
HETATM 14 C C22 YOR . . . I 4 51.85 11.189 76.595 1 72.62 ? C22 YOR 1102 C 1 
HETATM 15 C C24 YOR . . . I 4 53.472 10.678 74.911 1 88.73 ? C24 YOR 1102 C 1 
HETATM 16 C C26 YOR . . . I 4 51.827 12.39 74.496 1 73.92 ? C26 YOR 1102 C 1 
HETATM 17 C C1 YOR . . . I 4 54.628 15.898 73.708 1 90.48 ? C1 YOR 1102 C 1 
HETATM 18 C C2 YOR . . . I 4 53.405 16.773 73.807 1 84.54 ? C2 YOR 1102 C 1 
HETATM 19 C C3 YOR . . . I 4 53.003 17.249 75.039 1 86.65 ? C3 YOR 1102 C 1 
HETATM 20 C C9 YOR . . . I 4 53.494 17.554 69.308 1 97.07 ? C9 YOR 1102 C 1 
HETATM 21 O O1 YOR . . . I 4 53.98 18.214 68.41 1 112.74 ? O1 YOR 1102 C 1 
HETATM 22 C C11 YOR . . . I 4 51.268 16.682 68.198 1 109.38 ? C11 YOR 1102 C 1 
HETATM 23 C C12 YOR . . . I 4 50.118 15.933 68.413 1 113.96 ? C12 YOR 1102 C 1 
HETATM 24 N N2 YOR . . . I 4 49.174 15.781 67.394 1 117.26 ? N2 YOR 1102 C 1 
HETATM 25 C C14 YOR . . . I 4 48.455 16.229 65.029 1 112.56 ? C14 YOR 1102 C 1 
HETATM 26 O O2 YOR . . . I 4 47.622 17.406 65.021 1 115.06 ? O2 YOR 1102 C 1 
HETATM 27 C C16 YOR . . . I 4 49.888 15.336 69.648 1 106.32 ? C16 YOR 1102 C 1 
HETATM 28 C C18 YOR . . . I 4 51.392 13.934 72.446 1 93.82 ? C18 YOR 1102 C 1 
HETATM 29 O O3 YOR . . . I 4 52.323 13.488 71.8 1 100.22 ? O3 YOR 1102 C 1 
HETATM 30 C C19 YOR . . . I 4 51.084 13.444 73.799 1 80.87 ? C19 YOR 1102 C 1 
HETATM 31 S S YOR . . . I 4 49.921 13.225 76.047 1 63.73 ? S YOR 1102 C 1 
HETATM 32 C C23 YOR . . . I 4 52.93 10.456 76.168 1 79.47 ? C23 YOR 1102 C 1 
HETATM 33 C C25 YOR . . . I 4 52.936 11.63 74.081 1 89.63 ? C25 YOR 1102 C 1 
HETATM 34 C C27 YOR . . . I 4 51.962 16.23 70.455 1 96.02 ? C27 YOR 1102 C 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           34 
#