data_8V8J # _model_server_result.job_id gfMPktOR6MhSmg2QSk4KNA _model_server_result.datetime_utc '2024-11-23 21:20:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1103}' # _entry.id 8V8J # _exptl.entry_id 8V8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.527 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S)-N~1~-[(4P)-2-tert-butyl-4'-methyl[4,5'-bi-1,3-thiazol]-2'-yl]pyrrolidine-1,2-dicarboxamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.83 _cell.angle_gamma 90 _cell.entry_id 8V8J _cell.length_a 236.94 _cell.length_b 158.48 _cell.length_c 121.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # _chem_comp.formula 'C17 H23 N5 O2 S2' _chem_comp.formula_weight 393.527 _chem_comp.id YNZ _chem_comp.mon_nstd_flag . _chem_comp.name "(2S)-N~1~-[(4P)-2-tert-butyl-4'-methyl[4,5'-bi-1,3-thiazol]-2'-yl]pyrrolidine-1,2-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 YNZ sing 374 n n C15 C14 YNZ sing 375 n n C14 C17 YNZ sing 376 n n C14 C13 YNZ sing 377 n n C13 S2 YNZ sing 378 n y C13 N5 YNZ doub 379 n y S2 C12 YNZ sing 380 n y N5 C11 YNZ sing 381 n y C12 C11 YNZ doub 382 n y C11 C8 YNZ sing 383 n n C8 S1 YNZ sing 384 n y C8 C9 YNZ doub 385 n y S1 C7 YNZ sing 386 n y C9 C10 YNZ sing 387 n n C9 N4 YNZ sing 388 n y O2 C6 YNZ doub 389 n n C7 N4 YNZ doub 390 n y C7 N3 YNZ sing 391 n n O1 C5 YNZ doub 392 n n C6 N3 YNZ sing 393 n n C6 N1 YNZ sing 394 n n C5 N2 YNZ sing 395 n n C5 C4 YNZ sing 396 n n C4 N1 YNZ sing 397 n n C4 C1 YNZ sing 398 n n N1 C3 YNZ sing 399 n n C3 C2 YNZ sing 400 n n C1 C2 YNZ sing 401 n n C17 H1 YNZ sing 402 n n C17 H2 YNZ sing 403 n n C17 H3 YNZ sing 404 n n C16 H4 YNZ sing 405 n n C16 H5 YNZ sing 406 n n C16 H6 YNZ sing 407 n n C15 H7 YNZ sing 408 n n C15 H8 YNZ sing 409 n n C15 H9 YNZ sing 410 n n C12 H10 YNZ sing 411 n n C1 H11 YNZ sing 412 n n C1 H12 YNZ sing 413 n n C10 H13 YNZ sing 414 n n C10 H14 YNZ sing 415 n n C10 H15 YNZ sing 416 n n C2 H16 YNZ sing 417 n n C2 H17 YNZ sing 418 n n C3 H18 YNZ sing 419 n n C3 H19 YNZ sing 420 n n C4 H20 YNZ sing 421 n n N2 H21 YNZ sing 422 n n N2 H22 YNZ sing 423 n n N3 H23 YNZ sing 424 n n # _atom_sites.entry_id 8V8J _atom_sites.fract_transf_matrix[1][1] 0.00422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001777 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 YO4 A 1 1101 1101 YO4 R07 . F 4 YOR A 1 1102 1 YOR LIG . G 5 YNZ A 1 1103 1 YNZ LG1 . H 3 YO4 C 1 1101 1101 YO4 R07 . I 4 YOR C 1 1102 2 YOR LIG . J 5 YNZ C 1 1103 2 YNZ LG1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 YNZ . . . G 5 58.437 -1.008 17.167 1 110.18 ? C13 YNZ 1103 A 1 HETATM 2 C C17 YNZ . . . G 5 58.403 1.283 16.223 1 89.04 ? C17 YNZ 1103 A 1 HETATM 3 C C16 YNZ . . . G 5 57.973 -0.69 14.749 1 115.06 ? C16 YNZ 1103 A 1 HETATM 4 C C15 YNZ . . . G 5 60.264 -0.282 15.66 1 88.78 ? C15 YNZ 1103 A 1 HETATM 5 C C11 YNZ . . . G 5 58.446 -1.549 19.338 1 104.79 ? C11 YNZ 1103 A 1 HETATM 6 C C12 YNZ . . . G 5 57.709 -2.596 18.899 1 101.1 ? C12 YNZ 1103 A 1 HETATM 7 C C1 YNZ . . . G 5 64.08 2.317 26.335 1 132.02 ? C1 YNZ 1103 A 1 HETATM 8 C C10 YNZ . . . G 5 57.184 -2.689 22.037 1 78.46 ? C10 YNZ 1103 A 1 HETATM 9 C C14 YNZ . . . G 5 58.766 -0.178 15.953 1 104.14 ? C14 YNZ 1103 A 1 HETATM 10 C C2 YNZ . . . G 5 62.837 1.976 27.195 1 117.24 ? C2 YNZ 1103 A 1 HETATM 11 C C3 YNZ . . . G 5 62.096 0.966 26.283 1 114.44 ? C3 YNZ 1103 A 1 HETATM 12 C C4 YNZ . . . G 5 63.486 2.35 24.912 1 125.09 ? C4 YNZ 1103 A 1 HETATM 13 C C5 YNZ . . . G 5 64.563 1.984 23.92 1 107.47 ? C5 YNZ 1103 A 1 HETATM 14 C C6 YNZ . . . G 5 61.713 0.939 23.799 1 117.13 ? C6 YNZ 1103 A 1 HETATM 15 C C7 YNZ . . . G 5 59.965 -0.49 22.863 1 100.02 ? C7 YNZ 1103 A 1 HETATM 16 C C8 YNZ . . . G 5 58.858 -1.286 20.743 1 100.76 ? C8 YNZ 1103 A 1 HETATM 17 C C9 YNZ . . . G 5 58.353 -1.744 21.915 1 86.16 ? C9 YNZ 1103 A 1 HETATM 18 N N1 YNZ . . . G 5 62.373 1.382 24.895 1 125.03 ? N1 YNZ 1103 A 1 HETATM 19 N N2 YNZ . . . G 5 64.882 0.691 23.709 1 101.64 ? N2 YNZ 1103 A 1 HETATM 20 N N3 YNZ . . . G 5 60.704 0.042 23.927 1 115.82 ? N3 YNZ 1103 A 1 HETATM 21 N N4 YNZ . . . G 5 58.963 -1.306 23.001 1 90.01 ? N4 YNZ 1103 A 1 HETATM 22 N N5 YNZ . . . G 5 58.815 -0.728 18.364 1 107.45 ? N5 YNZ 1103 A 1 HETATM 23 O O1 YNZ . . . G 5 65.139 2.858 23.305 1 104.95 ? O1 YNZ 1103 A 1 HETATM 24 O O2 YNZ . . . G 5 62.039 1.362 22.71 1 111.35 ? O2 YNZ 1103 A 1 HETATM 25 S S1 YNZ . . . G 5 60.202 -0.22 21.137 1 130.74 ? S1 YNZ 1103 A 1 HETATM 26 S S2 YNZ . . . G 5 57.513 -2.445 17.153 1 121.98 ? S2 YNZ 1103 A 1 # _model_server_stats.io_time_ms 317 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 464 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #