data_8V8U # _model_server_result.job_id TqqRzI90XENWT4nFyeVbuw _model_server_result.datetime_utc '2024-11-22 07:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1101}' # _entry.id 8V8U # _exptl.entry_id 8V8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-9-[(1R)-1-(2-carboxyanilino)ethyl]-3-cyano-7-methyl-4-oxo-2-(piperidin-1-yl)-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.69 _cell.angle_gamma 90 _cell.entry_id 8V8U _cell.length_a 84.633 _cell.length_b 121.859 _cell.length_c 163.881 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C24 H25 N5 O3' _chem_comp.formula_weight 431.487 _chem_comp.id YQB _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-9-[(1R)-1-(2-carboxyanilino)ethyl]-3-cyano-7-methyl-4-oxo-2-(piperidin-1-yl)-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N31 C30 YQB trip 430 n n O19 C18 YQB doub 431 n n C30 C20 YQB sing 432 n n C18 C20 YQB sing 433 n n C18 N17 YQB sing 434 n n C20 C21 YQB doub 435 n n C16 N17 YQB sing 436 n n C16 C15 YQB doub 437 n n N17 C23 YQB sing 438 n n C21 N24 YQB sing 439 n n C21 N22 YQB sing 440 n n C25 N24 YQB sing 441 n n C25 C26 YQB sing 442 n n N24 C29 YQB sing 443 n n C32 C15 YQB sing 444 n n C15 C14 YQB sing 445 n n C23 N22 YQB doub 446 n n C23 C13 YQB sing 447 n n C29 C28 YQB sing 448 n n C14 C13 YQB doub 449 n n C26 C27 YQB sing 450 n n C13 C2 YQB sing 451 n n C27 C28 YQB sing 452 n n C1 C2 YQB sing 453 n n C2 N3 YQB sing 454 n n N3 C4 YQB sing 455 n n C5 C4 YQB doub 456 n y C5 C6 YQB sing 457 n y C4 C9 YQB sing 458 n y C6 C7 YQB doub 459 n y C9 C10 YQB sing 460 n n C9 C8 YQB doub 461 n y C7 C8 YQB sing 462 n y C10 O12 YQB doub 463 n n C10 O11 YQB sing 464 n n C1 H1 YQB sing 465 n n C1 H2 YQB sing 466 n n C1 H3 YQB sing 467 n n C14 H4 YQB sing 468 n n C16 H5 YQB sing 469 n n C2 H6 YQB sing 470 n n C25 H8 YQB sing 471 n n C25 H9 YQB sing 472 n n C26 H10 YQB sing 473 n n C26 H11 YQB sing 474 n n C27 H12 YQB sing 475 n n C27 H13 YQB sing 476 n n C28 H14 YQB sing 477 n n C28 H15 YQB sing 478 n n C29 H16 YQB sing 479 n n C29 H17 YQB sing 480 n n C32 H18 YQB sing 481 n n C32 H19 YQB sing 482 n n C32 H20 YQB sing 483 n n C5 H21 YQB sing 484 n n C6 H22 YQB sing 485 n n C7 H23 YQB sing 486 n n C8 H24 YQB sing 487 n n N3 H25 YQB sing 488 n n O11 H26 YQB sing 489 n n # _atom_sites.entry_id 8V8U _atom_sites.fract_transf_matrix[1][1] 0.011816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000349 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 1LT A 1 1100 1100 1LT 1LT . F 4 YQB A 1 1101 1101 YQB L14 . G 3 1LT C 1 1100 1100 1LT 1LT . H 4 YQB C 1 1101 1101 YQB L14 . I 5 HOH A 1 1201 1 HOH HOH . I 5 HOH A 2 1202 7 HOH HOH . I 5 HOH A 3 1203 8 HOH HOH . I 5 HOH A 4 1204 3 HOH HOH . I 5 HOH A 5 1205 4 HOH HOH . I 5 HOH A 6 1206 12 HOH HOH . I 5 HOH A 7 1207 2 HOH HOH . I 5 HOH A 8 1208 14 HOH HOH . I 5 HOH A 9 1209 6 HOH HOH . I 5 HOH A 10 1210 13 HOH HOH . I 5 HOH A 11 1211 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YQB . . . F 4 -7.644 21.067 -59.696 1 92 ? C1 YQB 1101 A 1 HETATM 2 C C10 YQB . . . F 4 -8.712 18.348 -55.66 1 134.24 ? C10 YQB 1101 A 1 HETATM 3 C C13 YQB . . . F 4 -6.769 18.893 -60.493 1 103.68 ? C13 YQB 1101 A 1 HETATM 4 C C14 YQB . . . F 4 -7.836 18.061 -60.668 1 97.48 ? C14 YQB 1101 A 1 HETATM 5 C C15 YQB . . . F 4 -7.887 17.139 -61.74 1 93.58 ? C15 YQB 1101 A 1 HETATM 6 C C16 YQB . . . F 4 -6.851 17.064 -62.622 1 95.59 ? C16 YQB 1101 A 1 HETATM 7 C C18 YQB . . . F 4 -4.671 17.785 -63.409 1 103.88 ? C18 YQB 1101 A 1 HETATM 8 C C2 YQB . . . F 4 -6.773 19.863 -59.306 1 90.03 ? C2 YQB 1101 A 1 HETATM 9 C C20 YQB . . . F 4 -3.547 18.638 -63.255 1 105.49 ? C20 YQB 1101 A 1 HETATM 10 C C21 YQB . . . F 4 -3.546 19.533 -62.205 1 101.66 ? C21 YQB 1101 A 1 HETATM 11 C C23 YQB . . . F 4 -5.648 18.837 -61.411 1 109.31 ? C23 YQB 1101 A 1 HETATM 12 C C25 YQB . . . F 4 -1.074 20.021 -61.975 1 90.7 ? C25 YQB 1101 A 1 HETATM 13 C C26 YQB . . . F 4 -0.414 20.036 -60.591 1 94.52 ? C26 YQB 1101 A 1 HETATM 14 C C27 YQB . . . F 4 -0.578 21.372 -59.866 1 87.44 ? C27 YQB 1101 A 1 HETATM 15 C C28 YQB . . . F 4 -2.078 21.653 -59.781 1 98.43 ? C28 YQB 1101 A 1 HETATM 16 C C29 YQB . . . F 4 -2.741 21.675 -61.164 1 90.93 ? C29 YQB 1101 A 1 HETATM 17 C C30 YQB . . . F 4 -2.523 18.465 -64.246 1 97.42 ? C30 YQB 1101 A 1 HETATM 18 C C32 YQB . . . F 4 -9.111 16.258 -61.869 1 93.4 ? C32 YQB 1101 A 1 HETATM 19 C C4 YQB . . . F 4 -6.895 18.154 -57.419 1 95.74 ? C4 YQB 1101 A 1 HETATM 20 C C5 YQB . . . F 4 -5.741 17.494 -57.867 1 103.23 ? C5 YQB 1101 A 1 HETATM 21 C C6 YQB . . . F 4 -5.21 16.448 -57.135 1 105.57 ? C6 YQB 1101 A 1 HETATM 22 C C7 YQB . . . F 4 -5.81 16.033 -55.95 1 99.89 ? C7 YQB 1101 A 1 HETATM 23 C C8 YQB . . . F 4 -6.95 16.673 -55.498 1 104.37 ? C8 YQB 1101 A 1 HETATM 24 C C9 YQB . . . F 4 -7.515 17.738 -56.213 1 115.14 ? C9 YQB 1101 A 1 HETATM 25 N N17 YQB . . . F 4 -5.731 17.9 -62.473 1 97.01 ? N17 YQB 1101 A 1 HETATM 26 N N22 YQB . . . F 4 -4.573 19.605 -61.312 1 106.91 ? N22 YQB 1101 A 1 HETATM 27 N N24 YQB . . . F 4 -2.505 20.43 -61.952 1 104.88 ? N24 YQB 1101 A 1 HETATM 28 N N3 YQB . . . F 4 -7.438 19.217 -58.159 1 93.59 ? N3 YQB 1101 A 1 HETATM 29 N N31 YQB . . . F 4 -1.701 18.337 -65.029 1 103.23 ? N31 YQB 1101 A 1 HETATM 30 O O11 YQB . . . F 4 -9.635 17.701 -55.188 1 120.98 ? O11 YQB 1101 A 1 HETATM 31 O O12 YQB . . . F 4 -8.838 19.687 -55.646 1 153.51 -1 O12 YQB 1101 A 1 HETATM 32 O O19 YQB . . . F 4 -4.808 16.948 -64.323 1 130.51 ? O19 YQB 1101 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #