data_8V8U
#
_model_server_result.job_id            tgVSM2GV3fZ9idChoNjC7Q 
_model_server_result.datetime_utc      '2024-11-22 07:34:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8v8u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1101}' 
#
_entry.id    8V8U 
#
_exptl.entry_id    8V8U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              431.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-9-[(1R)-1-(2-carboxyanilino)ethyl]-3-cyano-7-methyl-4-oxo-2-(piperidin-1-yl)-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.69 
_cell.angle_gamma         90 
_cell.entry_id            8V8U 
_cell.length_a            84.633 
_cell.length_b            121.859 
_cell.length_c            163.881 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8V8U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
_chem_comp.formula           'C24 H25 N5 O3' 
_chem_comp.formula_weight    431.487 
_chem_comp.id                YQB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-9-[(1R)-1-(2-carboxyanilino)ethyl]-3-cyano-7-methyl-4-oxo-2-(piperidin-1-yl)-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N31 C30 YQB trip 430 n n 
O19 C18 YQB doub 431 n n 
C30 C20 YQB sing 432 n n 
C18 C20 YQB sing 433 n n 
C18 N17 YQB sing 434 n n 
C20 C21 YQB doub 435 n n 
C16 N17 YQB sing 436 n n 
C16 C15 YQB doub 437 n n 
N17 C23 YQB sing 438 n n 
C21 N24 YQB sing 439 n n 
C21 N22 YQB sing 440 n n 
C25 N24 YQB sing 441 n n 
C25 C26 YQB sing 442 n n 
N24 C29 YQB sing 443 n n 
C32 C15 YQB sing 444 n n 
C15 C14 YQB sing 445 n n 
C23 N22 YQB doub 446 n n 
C23 C13 YQB sing 447 n n 
C29 C28 YQB sing 448 n n 
C14 C13 YQB doub 449 n n 
C26 C27 YQB sing 450 n n 
C13 C2 YQB sing 451 n n 
C27 C28 YQB sing 452 n n 
C1 C2 YQB sing 453 n n 
C2 N3 YQB sing 454 n n 
N3 C4 YQB sing 455 n n 
C5 C4 YQB doub 456 n y 
C5 C6 YQB sing 457 n y 
C4 C9 YQB sing 458 n y 
C6 C7 YQB doub 459 n y 
C9 C10 YQB sing 460 n n 
C9 C8 YQB doub 461 n y 
C7 C8 YQB sing 462 n y 
C10 O12 YQB doub 463 n n 
C10 O11 YQB sing 464 n n 
C1 H1 YQB sing 465 n n 
C1 H2 YQB sing 466 n n 
C1 H3 YQB sing 467 n n 
C14 H4 YQB sing 468 n n 
C16 H5 YQB sing 469 n n 
C2 H6 YQB sing 470 n n 
C25 H8 YQB sing 471 n n 
C25 H9 YQB sing 472 n n 
C26 H10 YQB sing 473 n n 
C26 H11 YQB sing 474 n n 
C27 H12 YQB sing 475 n n 
C27 H13 YQB sing 476 n n 
C28 H14 YQB sing 477 n n 
C28 H15 YQB sing 478 n n 
C29 H16 YQB sing 479 n n 
C29 H17 YQB sing 480 n n 
C32 H18 YQB sing 481 n n 
C32 H19 YQB sing 482 n n 
C32 H20 YQB sing 483 n n 
C5 H21 YQB sing 484 n n 
C6 H22 YQB sing 485 n n 
C7 H23 YQB sing 486 n n 
C8 H24 YQB sing 487 n n 
N3 H25 YQB sing 488 n n 
O11 H26 YQB sing 489 n n 
#
_atom_sites.entry_id                     8V8U 
_atom_sites.fract_transf_matrix[1][1]    0.011816 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000349 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006105 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 1LT A 1 1100 1100 1LT 1LT . 
F 4 YQB A 1 1101 1101 YQB L14 . 
G 3 1LT C 1 1100 1100 1LT 1LT . 
H 4 YQB C 1 1101 1101 YQB L14 . 
I 5 HOH A 1 1201 1 HOH HOH . 
I 5 HOH A 2 1202 7 HOH HOH . 
I 5 HOH A 3 1203 8 HOH HOH . 
I 5 HOH A 4 1204 3 HOH HOH . 
I 5 HOH A 5 1205 4 HOH HOH . 
I 5 HOH A 6 1206 12 HOH HOH . 
I 5 HOH A 7 1207 2 HOH HOH . 
I 5 HOH A 8 1208 14 HOH HOH . 
I 5 HOH A 9 1209 6 HOH HOH . 
I 5 HOH A 10 1210 13 HOH HOH . 
I 5 HOH A 11 1211 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YQB . . . H 4 6.045 -19.121 -20.95 1 133.06 ? C1 YQB 1101 C 1 
HETATM 2 C C10 YQB . . . H 4 7.334 -17.361 -25.241 1 166.26 ? C10 YQB 1101 C 1 
HETATM 3 C C13 YQB . . . H 4 6.007 -16.814 -20.042 1 131.9 ? C13 YQB 1101 C 1 
HETATM 4 C C14 YQB . . . H 4 4.938 -16.124 -20.532 1 131.07 ? C14 YQB 1101 C 1 
HETATM 5 C C15 YQB . . . H 4 4.204 -15.227 -19.721 1 126.11 ? C15 YQB 1101 C 1 
HETATM 6 C C16 YQB . . . H 4 4.558 -15.034 -18.421 1 124.52 ? C16 YQB 1101 C 1 
HETATM 7 C C18 YQB . . . H 4 5.996 -15.496 -16.525 1 123.08 ? C18 YQB 1101 C 1 
HETATM 8 C C2 YQB . . . H 4 6.765 -17.767 -20.977 1 135.46 ? C2 YQB 1101 C 1 
HETATM 9 C C20 YQB . . . H 4 7.102 -16.193 -15.974 1 121.14 ? C20 YQB 1101 C 1 
HETATM 10 C C21 YQB . . . H 4 7.796 -17.069 -16.799 1 119.34 ? C21 YQB 1101 C 1 
HETATM 11 C C23 YQB . . . H 4 6.413 -16.631 -18.662 1 124.96 ? C23 YQB 1101 C 1 
HETATM 12 C C25 YQB . . . H 4 9.587 -17.911 -15.15 1 117.23 ? C25 YQB 1101 C 1 
HETATM 13 C C26 YQB . . . H 4 11.108 -17.727 -15.247 1 112.99 ? C26 YQB 1101 C 1 
HETATM 14 C C27 YQB . . . H 4 11.532 -17.441 -16.688 1 105.71 ? C27 YQB 1101 C 1 
HETATM 15 C C28 YQB . . . H 4 11.061 -18.634 -17.523 1 110.17 ? C28 YQB 1101 C 1 
HETATM 16 C C29 YQB . . . H 4 9.533 -18.738 -17.508 1 114.04 ? C29 YQB 1101 C 1 
HETATM 17 C C30 YQB . . . H 4 7.323 -15.86 -14.594 1 116.89 ? C30 YQB 1101 C 1 
HETATM 18 C C32 YQB . . . H 4 3.03 -14.505 -20.341 1 127.06 ? C32 YQB 1101 C 1 
HETATM 19 C C4 YQB . . . H 4 7.503 -16.298 -22.934 1 153.39 ? C4 YQB 1101 C 1 
HETATM 20 C C5 YQB . . . H 4 8.033 -15.273 -22.137 1 155.61 ? C5 YQB 1101 C 1 
HETATM 21 C C6 YQB . . . H 4 8.861 -14.317 -22.69 1 241.14 ? C6 YQB 1101 C 1 
HETATM 22 C C7 YQB . . . H 4 9.179 -14.35 -24.043 1 158.28 ? C7 YQB 1101 C 1 
HETATM 23 C C8 YQB . . . H 4 8.663 -15.355 -24.841 1 150.88 ? C8 YQB 1101 C 1 
HETATM 24 C C9 YQB . . . H 4 7.819 -16.344 -24.318 1 154.7 ? C9 YQB 1101 C 1 
HETATM 25 N N17 YQB . . . H 4 5.655 -15.725 -17.882 1 122.86 ? N17 YQB 1101 C 1 
HETATM 26 N N22 YQB . . . H 4 7.437 -17.255 -18.101 1 121.55 ? N22 YQB 1101 C 1 
HETATM 27 N N24 YQB . . . H 4 8.915 -17.851 -16.481 1 116.32 ? N24 YQB 1101 C 1 
HETATM 28 N N3 YQB . . . H 4 6.664 -17.268 -22.364 1 144.21 ? N3 YQB 1101 C 1 
HETATM 29 N N31 YQB . . . H 4 7.502 -15.601 -13.498 1 113.59 ? N31 YQB 1101 C 1 
HETATM 30 O O11 YQB . . . H 4 7.724 -17.462 -26.395 1 148.06 ? O11 YQB 1101 C 1 
HETATM 31 O O12 YQB . . . H 4 6.412 -18.254 -24.842 1 144.21 -1 O12 YQB 1101 C 1 
HETATM 32 O O19 YQB . . . H 4 5.285 -14.688 -15.896 1 123.04 ? O19 YQB 1101 C 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#