data_8V8V # _model_server_result.job_id BeXbvtWVy-bx--kkGUZU6g _model_server_result.datetime_utc '2024-11-23 11:13:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1201}' # _entry.id 8V8V # _exptl.entry_id 8V8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.485 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[(1~{R})-1-(7-methyl-4-oxidanylidene-2-piperidin-1-yl-3~{H}-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.04 _cell.angle_gamma 90 _cell.entry_id 8V8V _cell.length_a 84.172 _cell.length_b 121.137 _cell.length_c 163.902 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id CD2 _struct_conn.ptnr1_label_comp_id LEU _struct_conn.ptnr1_label_seq_id 238 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id LEU _struct_conn.ptnr1_auth_seq_id 233 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id C17 _struct_conn.ptnr2_label_comp_id 1LT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id 1LT _struct_conn.ptnr2_auth_seq_id 1202 _struct_conn.ptnr2_symmetry 2_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.493 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H27 N4 O3 1' _chem_comp.formula_weight 407.485 _chem_comp.id YQ2 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[(1~{R})-1-(7-methyl-4-oxidanylidene-2-piperidin-1-yl-3~{H}-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C23 YQ2 doub 430 n n C23 O2 YQ2 sing 431 n n C23 C18 YQ2 sing 432 n n C19 C18 YQ2 doub 433 n y C19 C20 YQ2 sing 434 n y C18 C17 YQ2 sing 435 n y C20 C21 YQ2 doub 436 n y C17 N4 YQ2 sing 437 n n C17 C22 YQ2 doub 438 n y C21 C22 YQ2 sing 439 n y N4 C10 YQ2 sing 440 n n C10 C11 YQ2 sing 441 n n C10 C3 YQ2 sing 442 n n C2 C3 YQ2 doub 443 n y C2 C1 YQ2 sing 444 n y C3 C4 YQ2 sing 445 n y C9 C1 YQ2 sing 446 n n C1 C5 YQ2 doub 447 n y C4 N2 YQ2 sing 448 n n C4 N1 YQ2 doub 449 n y N2 C6 YQ2 doub 450 n n C5 N1 YQ2 sing 451 n y N1 C8 YQ2 sing 452 n n C6 N3 YQ2 sing 453 n n C6 C7 YQ2 sing 454 n n C13 C12 YQ2 sing 455 n n C13 C14 YQ2 sing 456 n n C12 N3 YQ2 sing 457 n n N3 C16 YQ2 sing 458 n n C8 C7 YQ2 sing 459 n n C8 O1 YQ2 doub 460 n n C15 C14 YQ2 sing 461 n n C15 C16 YQ2 sing 462 n n C13 H1 YQ2 sing 463 n n C13 H2 YQ2 sing 464 n n C15 H3 YQ2 sing 465 n n C15 H4 YQ2 sing 466 n n C20 H5 YQ2 sing 467 n n C22 H6 YQ2 sing 468 n n C11 H7 YQ2 sing 469 n n C11 H8 YQ2 sing 470 n n C11 H9 YQ2 sing 471 n n C12 H10 YQ2 sing 472 n n C12 H11 YQ2 sing 473 n n C19 H12 YQ2 sing 474 n n C10 H13 YQ2 sing 475 n n C14 H14 YQ2 sing 476 n n C14 H15 YQ2 sing 477 n n C16 H16 YQ2 sing 478 n n C16 H17 YQ2 sing 479 n n C2 H18 YQ2 sing 480 n n C21 H19 YQ2 sing 481 n n C5 H20 YQ2 sing 482 n n C7 H21 YQ2 sing 483 n n C7 H22 YQ2 sing 484 n n C9 H23 YQ2 sing 485 n n C9 H24 YQ2 sing 486 n n C9 H25 YQ2 sing 487 n n N4 H26 YQ2 sing 488 n n O2 H27 YQ2 sing 489 n n # _atom_sites.entry_id 8V8V _atom_sites.fract_transf_matrix[1][1] 0.01188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000423 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 YQ2 A 1 1201 1201 YQ2 21R . F 4 1LT A 1 1202 1101 1LT 1LT . G 3 YQ2 C 1 1201 1201 YQ2 21R . H 4 1LT C 1 1202 1101 1LT 1LT . I 5 HOH A 1 1301 11 HOH HOH . I 5 HOH A 2 1302 104 HOH HOH . I 5 HOH A 3 1303 3 HOH HOH . I 5 HOH A 4 1304 30 HOH HOH . I 5 HOH A 5 1305 21 HOH HOH . I 5 HOH A 6 1306 80 HOH HOH . I 5 HOH A 7 1307 60 HOH HOH . I 5 HOH A 8 1308 32 HOH HOH . I 5 HOH A 9 1309 5 HOH HOH . I 5 HOH A 10 1310 13 HOH HOH . I 5 HOH A 11 1311 8 HOH HOH . I 5 HOH A 12 1312 34 HOH HOH . I 5 HOH A 13 1313 35 HOH HOH . I 5 HOH A 14 1314 26 HOH HOH . I 5 HOH A 15 1315 44 HOH HOH . I 5 HOH A 16 1316 20 HOH HOH . I 5 HOH A 17 1317 53 HOH HOH . I 5 HOH A 18 1318 29 HOH HOH . I 5 HOH A 19 1319 103 HOH HOH . I 5 HOH A 20 1320 25 HOH HOH . I 5 HOH A 21 1321 18 HOH HOH . I 5 HOH A 22 1322 72 HOH HOH . I 5 HOH A 23 1323 121 HOH HOH . I 5 HOH A 24 1324 23 HOH HOH . I 5 HOH A 25 1325 77 HOH HOH . I 5 HOH A 26 1326 94 HOH HOH . I 5 HOH A 27 1327 52 HOH HOH . I 5 HOH A 28 1328 36 HOH HOH . I 5 HOH A 29 1329 65 HOH HOH . I 5 HOH A 30 1330 41 HOH HOH . I 5 HOH A 31 1331 42 HOH HOH . I 5 HOH A 32 1332 93 HOH HOH . I 5 HOH A 33 1333 88 HOH HOH . I 5 HOH A 34 1334 62 HOH HOH . I 5 HOH A 35 1335 106 HOH HOH . I 5 HOH A 36 1336 85 HOH HOH . I 5 HOH A 37 1337 50 HOH HOH . I 5 HOH A 38 1338 54 HOH HOH . I 5 HOH A 39 1339 56 HOH HOH . I 5 HOH A 40 1340 86 HOH HOH . I 5 HOH A 41 1341 67 HOH HOH . I 5 HOH A 42 1342 109 HOH HOH . I 5 HOH A 43 1343 101 HOH HOH . I 5 HOH A 44 1344 110 HOH HOH . I 5 HOH A 45 1345 37 HOH HOH . I 5 HOH A 46 1346 27 HOH HOH . I 5 HOH A 47 1347 48 HOH HOH . I 5 HOH A 48 1348 51 HOH HOH . I 5 HOH A 49 1349 39 HOH HOH . I 5 HOH A 50 1350 31 HOH HOH . I 5 HOH A 51 1351 99 HOH HOH . I 5 HOH A 52 1352 112 HOH HOH . I 5 HOH A 53 1353 105 HOH HOH . I 5 HOH A 54 1354 43 HOH HOH . I 5 HOH A 55 1355 98 HOH HOH . I 5 HOH A 56 1356 46 HOH HOH . I 5 HOH A 57 1357 124 HOH HOH . I 5 HOH A 58 1358 10 HOH HOH . I 5 HOH A 59 1359 45 HOH HOH . I 5 HOH A 60 1360 118 HOH HOH . I 5 HOH A 61 1361 123 HOH HOH . I 5 HOH A 62 1362 73 HOH HOH . I 5 HOH A 63 1363 108 HOH HOH . J 5 HOH B 1 701 68 HOH HOH . J 5 HOH B 2 702 47 HOH HOH . J 5 HOH B 3 703 57 HOH HOH . K 5 HOH C 1 1301 15 HOH HOH . K 5 HOH C 2 1302 91 HOH HOH . K 5 HOH C 3 1303 82 HOH HOH . K 5 HOH C 4 1304 22 HOH HOH . K 5 HOH C 5 1305 75 HOH HOH . K 5 HOH C 6 1306 59 HOH HOH . K 5 HOH C 7 1307 12 HOH HOH . K 5 HOH C 8 1308 66 HOH HOH . K 5 HOH C 9 1309 7 HOH HOH . K 5 HOH C 10 1310 24 HOH HOH . K 5 HOH C 11 1311 4 HOH HOH . K 5 HOH C 12 1312 14 HOH HOH . K 5 HOH C 13 1313 40 HOH HOH . K 5 HOH C 14 1314 78 HOH HOH . K 5 HOH C 15 1315 83 HOH HOH . K 5 HOH C 16 1316 17 HOH HOH . K 5 HOH C 17 1317 63 HOH HOH . K 5 HOH C 18 1318 90 HOH HOH . K 5 HOH C 19 1319 122 HOH HOH . K 5 HOH C 20 1320 71 HOH HOH . K 5 HOH C 21 1321 9 HOH HOH . K 5 HOH C 22 1322 19 HOH HOH . K 5 HOH C 23 1323 116 HOH HOH . K 5 HOH C 24 1324 16 HOH HOH . K 5 HOH C 25 1325 111 HOH HOH . K 5 HOH C 26 1326 74 HOH HOH . K 5 HOH C 27 1327 49 HOH HOH . K 5 HOH C 28 1328 102 HOH HOH . K 5 HOH C 29 1329 38 HOH HOH . K 5 HOH C 30 1330 58 HOH HOH . K 5 HOH C 31 1331 114 HOH HOH . K 5 HOH C 32 1332 117 HOH HOH . K 5 HOH C 33 1333 119 HOH HOH . K 5 HOH C 34 1334 113 HOH HOH . K 5 HOH C 35 1335 61 HOH HOH . K 5 HOH C 36 1336 81 HOH HOH . K 5 HOH C 37 1337 107 HOH HOH . K 5 HOH C 38 1338 64 HOH HOH . L 5 HOH D 1 701 84 HOH HOH . L 5 HOH D 2 702 100 HOH HOH . L 5 HOH D 3 703 92 HOH HOH . L 5 HOH D 4 704 79 HOH HOH . L 5 HOH D 5 705 87 HOH HOH . L 5 HOH D 6 706 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 YQ2 . . . E 3 -0.903 21.799 -60.273 1 81.17 ? C13 YQ2 1201 A 1 HETATM 2 C C15 YQ2 . . . E 3 0.226 20.699 -62.126 1 64.08 ? C15 YQ2 1201 A 1 HETATM 3 C C17 YQ2 . . . E 3 -6.71 17.892 -57.536 1 82.7 ? C17 YQ2 1201 A 1 HETATM 4 C C20 YQ2 . . . E 3 -5.617 15.927 -55.881 1 85.86 ? C20 YQ2 1201 A 1 HETATM 5 C C22 YQ2 . . . E 3 -5.801 16.978 -58.034 1 84.68 ? C22 YQ2 1201 A 1 HETATM 6 C C11 YQ2 . . . E 3 -7.235 20.749 -59.907 1 97.43 ? C11 YQ2 1201 A 1 HETATM 7 C C12 YQ2 . . . E 3 -2.051 20.772 -60.289 1 77.13 ? C12 YQ2 1201 A 1 HETATM 8 C C18 YQ2 . . . E 3 -7.08 17.806 -56.181 1 91.32 ? C18 YQ2 1201 A 1 HETATM 9 C C19 YQ2 . . . E 3 -6.52 16.822 -55.37 1 86.12 ? C19 YQ2 1201 A 1 HETATM 10 C C23 YQ2 . . . E 3 -8.007 18.715 -55.548 1 100.25 ? C23 YQ2 1201 A 1 HETATM 11 C C1 YQ2 . . . E 3 -7.468 16.88 -62.202 1 81.75 ? C1 YQ2 1201 A 1 HETATM 12 C C10 YQ2 . . . E 3 -6.596 19.419 -59.542 1 90.48 ? C10 YQ2 1201 A 1 HETATM 13 C C14 YQ2 . . . E 3 0.453 21.271 -60.741 1 72.09 ? C14 YQ2 1201 A 1 HETATM 14 C C16 YQ2 . . . E 3 -0.766 19.555 -62.013 1 72.82 ? C16 YQ2 1201 A 1 HETATM 15 C C2 YQ2 . . . E 3 -7.575 17.716 -61.1 1 75.59 ? C2 YQ2 1201 A 1 HETATM 16 C C21 YQ2 . . . E 3 -5.265 16.016 -57.215 1 90.51 ? C21 YQ2 1201 A 1 HETATM 17 C C3 YQ2 . . . E 3 -6.515 18.506 -60.744 1 85.12 ? C3 YQ2 1201 A 1 HETATM 18 C C4 YQ2 . . . E 3 -5.328 18.465 -61.501 1 89.78 ? C4 YQ2 1201 A 1 HETATM 19 C C5 YQ2 . . . E 3 -6.315 16.848 -62.93 1 86.9 ? C5 YQ2 1201 A 1 HETATM 20 C C6 YQ2 . . . E 3 -3.106 19.193 -61.927 1 79.95 ? C6 YQ2 1201 A 1 HETATM 21 C C7 YQ2 . . . E 3 -2.996 18.38 -62.992 1 78.84 ? C7 YQ2 1201 A 1 HETATM 22 C C8 YQ2 . . . E 3 -4.063 17.574 -63.346 1 78.64 ? C8 YQ2 1201 A 1 HETATM 23 C C9 YQ2 . . . E 3 -8.658 16.028 -62.56 1 80.88 ? C9 YQ2 1201 A 1 HETATM 24 N N1 YQ2 . . . E 3 -5.243 17.639 -62.579 1 87.19 ? N1 YQ2 1201 A 1 HETATM 25 N N2 YQ2 . . . E 3 -4.248 19.221 -61.2 1 84.54 ? N2 YQ2 1201 A 1 HETATM 26 N N3 YQ2 . . . E 3 -2.093 19.99 -61.528 1 71.83 ? N3 YQ2 1201 A 1 HETATM 27 N N4 YQ2 . . . E 3 -7.261 18.872 -58.377 1 82.24 ? N4 YQ2 1201 A 1 HETATM 28 O O1 YQ2 . . . E 3 -4.072 16.807 -64.303 1 80.55 ? O1 YQ2 1201 A 1 HETATM 29 O O2 YQ2 . . . E 3 -8.275 19.83 -56.036 1 100.93 ? O2 YQ2 1201 A 1 HETATM 30 O O3 YQ2 . . . E 3 -8.545 18.415 -54.458 1 106.98 ? O3 YQ2 1201 A 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 30 #