data_8V8V # _model_server_result.job_id GVHAilMTSOIcGubk4J9vfg _model_server_result.datetime_utc '2024-11-23 10:26:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1201}' # _entry.id 8V8V # _exptl.entry_id 8V8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.485 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[(1~{R})-1-(7-methyl-4-oxidanylidene-2-piperidin-1-yl-3~{H}-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.04 _cell.angle_gamma 90 _cell.entry_id 8V8V _cell.length_a 84.172 _cell.length_b 121.137 _cell.length_c 163.902 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id CD2 _struct_conn.ptnr1_label_comp_id LEU _struct_conn.ptnr1_label_seq_id 238 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id LEU _struct_conn.ptnr1_auth_seq_id 233 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id C17 _struct_conn.ptnr2_label_comp_id 1LT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id 1LT _struct_conn.ptnr2_auth_seq_id 1202 _struct_conn.ptnr2_symmetry 2_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.493 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H27 N4 O3 1' _chem_comp.formula_weight 407.485 _chem_comp.id YQ2 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[(1~{R})-1-(7-methyl-4-oxidanylidene-2-piperidin-1-yl-3~{H}-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C23 YQ2 doub 430 n n C23 O2 YQ2 sing 431 n n C23 C18 YQ2 sing 432 n n C19 C18 YQ2 doub 433 n y C19 C20 YQ2 sing 434 n y C18 C17 YQ2 sing 435 n y C20 C21 YQ2 doub 436 n y C17 N4 YQ2 sing 437 n n C17 C22 YQ2 doub 438 n y C21 C22 YQ2 sing 439 n y N4 C10 YQ2 sing 440 n n C10 C11 YQ2 sing 441 n n C10 C3 YQ2 sing 442 n n C2 C3 YQ2 doub 443 n y C2 C1 YQ2 sing 444 n y C3 C4 YQ2 sing 445 n y C9 C1 YQ2 sing 446 n n C1 C5 YQ2 doub 447 n y C4 N2 YQ2 sing 448 n n C4 N1 YQ2 doub 449 n y N2 C6 YQ2 doub 450 n n C5 N1 YQ2 sing 451 n y N1 C8 YQ2 sing 452 n n C6 N3 YQ2 sing 453 n n C6 C7 YQ2 sing 454 n n C13 C12 YQ2 sing 455 n n C13 C14 YQ2 sing 456 n n C12 N3 YQ2 sing 457 n n N3 C16 YQ2 sing 458 n n C8 C7 YQ2 sing 459 n n C8 O1 YQ2 doub 460 n n C15 C14 YQ2 sing 461 n n C15 C16 YQ2 sing 462 n n C13 H1 YQ2 sing 463 n n C13 H2 YQ2 sing 464 n n C15 H3 YQ2 sing 465 n n C15 H4 YQ2 sing 466 n n C20 H5 YQ2 sing 467 n n C22 H6 YQ2 sing 468 n n C11 H7 YQ2 sing 469 n n C11 H8 YQ2 sing 470 n n C11 H9 YQ2 sing 471 n n C12 H10 YQ2 sing 472 n n C12 H11 YQ2 sing 473 n n C19 H12 YQ2 sing 474 n n C10 H13 YQ2 sing 475 n n C14 H14 YQ2 sing 476 n n C14 H15 YQ2 sing 477 n n C16 H16 YQ2 sing 478 n n C16 H17 YQ2 sing 479 n n C2 H18 YQ2 sing 480 n n C21 H19 YQ2 sing 481 n n C5 H20 YQ2 sing 482 n n C7 H21 YQ2 sing 483 n n C7 H22 YQ2 sing 484 n n C9 H23 YQ2 sing 485 n n C9 H24 YQ2 sing 486 n n C9 H25 YQ2 sing 487 n n N4 H26 YQ2 sing 488 n n O2 H27 YQ2 sing 489 n n # _atom_sites.entry_id 8V8V _atom_sites.fract_transf_matrix[1][1] 0.01188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000423 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 YQ2 A 1 1201 1201 YQ2 21R . F 4 1LT A 1 1202 1101 1LT 1LT . G 3 YQ2 C 1 1201 1201 YQ2 21R . H 4 1LT C 1 1202 1101 1LT 1LT . I 5 HOH A 1 1301 11 HOH HOH . I 5 HOH A 2 1302 104 HOH HOH . I 5 HOH A 3 1303 3 HOH HOH . I 5 HOH A 4 1304 30 HOH HOH . I 5 HOH A 5 1305 21 HOH HOH . I 5 HOH A 6 1306 80 HOH HOH . I 5 HOH A 7 1307 60 HOH HOH . I 5 HOH A 8 1308 32 HOH HOH . I 5 HOH A 9 1309 5 HOH HOH . I 5 HOH A 10 1310 13 HOH HOH . I 5 HOH A 11 1311 8 HOH HOH . I 5 HOH A 12 1312 34 HOH HOH . I 5 HOH A 13 1313 35 HOH HOH . I 5 HOH A 14 1314 26 HOH HOH . I 5 HOH A 15 1315 44 HOH HOH . I 5 HOH A 16 1316 20 HOH HOH . I 5 HOH A 17 1317 53 HOH HOH . I 5 HOH A 18 1318 29 HOH HOH . I 5 HOH A 19 1319 103 HOH HOH . I 5 HOH A 20 1320 25 HOH HOH . I 5 HOH A 21 1321 18 HOH HOH . I 5 HOH A 22 1322 72 HOH HOH . I 5 HOH A 23 1323 121 HOH HOH . I 5 HOH A 24 1324 23 HOH HOH . I 5 HOH A 25 1325 77 HOH HOH . I 5 HOH A 26 1326 94 HOH HOH . I 5 HOH A 27 1327 52 HOH HOH . I 5 HOH A 28 1328 36 HOH HOH . I 5 HOH A 29 1329 65 HOH HOH . I 5 HOH A 30 1330 41 HOH HOH . I 5 HOH A 31 1331 42 HOH HOH . I 5 HOH A 32 1332 93 HOH HOH . I 5 HOH A 33 1333 88 HOH HOH . I 5 HOH A 34 1334 62 HOH HOH . I 5 HOH A 35 1335 106 HOH HOH . I 5 HOH A 36 1336 85 HOH HOH . I 5 HOH A 37 1337 50 HOH HOH . I 5 HOH A 38 1338 54 HOH HOH . I 5 HOH A 39 1339 56 HOH HOH . I 5 HOH A 40 1340 86 HOH HOH . I 5 HOH A 41 1341 67 HOH HOH . I 5 HOH A 42 1342 109 HOH HOH . I 5 HOH A 43 1343 101 HOH HOH . I 5 HOH A 44 1344 110 HOH HOH . I 5 HOH A 45 1345 37 HOH HOH . I 5 HOH A 46 1346 27 HOH HOH . I 5 HOH A 47 1347 48 HOH HOH . I 5 HOH A 48 1348 51 HOH HOH . I 5 HOH A 49 1349 39 HOH HOH . I 5 HOH A 50 1350 31 HOH HOH . I 5 HOH A 51 1351 99 HOH HOH . I 5 HOH A 52 1352 112 HOH HOH . I 5 HOH A 53 1353 105 HOH HOH . I 5 HOH A 54 1354 43 HOH HOH . I 5 HOH A 55 1355 98 HOH HOH . I 5 HOH A 56 1356 46 HOH HOH . I 5 HOH A 57 1357 124 HOH HOH . I 5 HOH A 58 1358 10 HOH HOH . I 5 HOH A 59 1359 45 HOH HOH . I 5 HOH A 60 1360 118 HOH HOH . I 5 HOH A 61 1361 123 HOH HOH . I 5 HOH A 62 1362 73 HOH HOH . I 5 HOH A 63 1363 108 HOH HOH . J 5 HOH B 1 701 68 HOH HOH . J 5 HOH B 2 702 47 HOH HOH . J 5 HOH B 3 703 57 HOH HOH . K 5 HOH C 1 1301 15 HOH HOH . K 5 HOH C 2 1302 91 HOH HOH . K 5 HOH C 3 1303 82 HOH HOH . K 5 HOH C 4 1304 22 HOH HOH . K 5 HOH C 5 1305 75 HOH HOH . K 5 HOH C 6 1306 59 HOH HOH . K 5 HOH C 7 1307 12 HOH HOH . K 5 HOH C 8 1308 66 HOH HOH . K 5 HOH C 9 1309 7 HOH HOH . K 5 HOH C 10 1310 24 HOH HOH . K 5 HOH C 11 1311 4 HOH HOH . K 5 HOH C 12 1312 14 HOH HOH . K 5 HOH C 13 1313 40 HOH HOH . K 5 HOH C 14 1314 78 HOH HOH . K 5 HOH C 15 1315 83 HOH HOH . K 5 HOH C 16 1316 17 HOH HOH . K 5 HOH C 17 1317 63 HOH HOH . K 5 HOH C 18 1318 90 HOH HOH . K 5 HOH C 19 1319 122 HOH HOH . K 5 HOH C 20 1320 71 HOH HOH . K 5 HOH C 21 1321 9 HOH HOH . K 5 HOH C 22 1322 19 HOH HOH . K 5 HOH C 23 1323 116 HOH HOH . K 5 HOH C 24 1324 16 HOH HOH . K 5 HOH C 25 1325 111 HOH HOH . K 5 HOH C 26 1326 74 HOH HOH . K 5 HOH C 27 1327 49 HOH HOH . K 5 HOH C 28 1328 102 HOH HOH . K 5 HOH C 29 1329 38 HOH HOH . K 5 HOH C 30 1330 58 HOH HOH . K 5 HOH C 31 1331 114 HOH HOH . K 5 HOH C 32 1332 117 HOH HOH . K 5 HOH C 33 1333 119 HOH HOH . K 5 HOH C 34 1334 113 HOH HOH . K 5 HOH C 35 1335 61 HOH HOH . K 5 HOH C 36 1336 81 HOH HOH . K 5 HOH C 37 1337 107 HOH HOH . K 5 HOH C 38 1338 64 HOH HOH . L 5 HOH D 1 701 84 HOH HOH . L 5 HOH D 2 702 100 HOH HOH . L 5 HOH D 3 703 92 HOH HOH . L 5 HOH D 4 704 79 HOH HOH . L 5 HOH D 5 705 87 HOH HOH . L 5 HOH D 6 706 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 YQ2 . . . G 3 10.542 -19.49 -16.672 1 102.76 ? C13 YQ2 1201 C 1 HETATM 2 C C15 YQ2 . . . G 3 11.122 -17.49 -15.343 1 93.29 ? C15 YQ2 1201 C 1 HETATM 3 C C17 YQ2 . . . G 3 7.342 -15.959 -23.178 1 114.74 ? C17 YQ2 1201 C 1 HETATM 4 C C20 YQ2 . . . G 3 9.054 -14.017 -24.248 1 106.42 ? C20 YQ2 1201 C 1 HETATM 5 C C22 YQ2 . . . G 3 7.616 -14.781 -22.496 1 105.25 ? C22 YQ2 1201 C 1 HETATM 6 C C11 YQ2 . . . G 3 6.125 -18.82 -21.119 1 111.44 ? C11 YQ2 1201 C 1 HETATM 7 C C12 YQ2 . . . G 3 9.613 -18.65 -17.571 1 98.41 ? C12 YQ2 1201 C 1 HETATM 8 C C18 YQ2 . . . G 3 7.935 -16.164 -24.441 1 123.15 ? C18 YQ2 1201 C 1 HETATM 9 C C19 YQ2 . . . G 3 8.788 -15.175 -24.945 1 119.72 ? C19 YQ2 1201 C 1 HETATM 10 C C23 YQ2 . . . G 3 7.743 -17.353 -25.26 1 126.85 ? C23 YQ2 1201 C 1 HETATM 11 C C1 YQ2 . . . G 3 4.269 -14.76 -19.681 1 112.69 ? C1 YQ2 1201 C 1 HETATM 12 C C10 YQ2 . . . G 3 6.564 -17.358 -21.225 1 119.93 ? C10 YQ2 1201 C 1 HETATM 13 C C14 YQ2 . . . G 3 11.704 -18.708 -16.049 1 98.9 ? C14 YQ2 1201 C 1 HETATM 14 C C16 YQ2 . . . G 3 10.339 -16.653 -16.345 1 94.7 ? C16 YQ2 1201 C 1 HETATM 15 C C2 YQ2 . . . G 3 4.83 -15.659 -20.579 1 114.13 ? C2 YQ2 1201 C 1 HETATM 16 C C21 YQ2 . . . G 3 8.46 -13.83 -23.016 1 102.21 ? C21 YQ2 1201 C 1 HETATM 17 C C3 YQ2 . . . G 3 5.936 -16.393 -20.222 1 118.52 ? C3 YQ2 1201 C 1 HETATM 18 C C4 YQ2 . . . G 3 6.494 -16.197 -18.934 1 109.63 ? C4 YQ2 1201 C 1 HETATM 19 C C5 YQ2 . . . G 3 4.811 -14.595 -18.45 1 104.52 ? C5 YQ2 1201 C 1 HETATM 20 C C6 YQ2 . . . G 3 8.105 -16.672 -17.228 1 99.92 ? C6 YQ2 1201 C 1 HETATM 21 C C7 YQ2 . . . G 3 7.54 -15.787 -16.378 1 101.67 ? C7 YQ2 1201 C 1 HETATM 22 C C8 YQ2 . . . G 3 6.428 -15.083 -16.792 1 105.72 ? C8 YQ2 1201 C 1 HETATM 23 C C9 YQ2 . . . G 3 3.05 -13.98 -20.094 1 116.78 ? C9 YQ2 1201 C 1 HETATM 24 N N1 YQ2 . . . G 3 5.92 -15.31 -18.082 1 99.56 ? N1 YQ2 1201 C 1 HETATM 25 N N2 YQ2 . . . G 3 7.586 -16.853 -18.48 1 105.5 ? N2 YQ2 1201 C 1 HETATM 26 N N3 YQ2 . . . G 3 9.2 -17.413 -16.901 1 94.66 ? N3 YQ2 1201 C 1 HETATM 27 N N4 YQ2 . . . G 3 6.473 -16.914 -22.609 1 120.89 ? N4 YQ2 1201 C 1 HETATM 28 O O1 YQ2 . . . G 3 5.819 -14.263 -16.112 1 120.42 ? O1 YQ2 1201 C 1 HETATM 29 O O2 YQ2 . . . G 3 7.127 -18.366 -24.858 1 125.53 ? O2 YQ2 1201 C 1 HETATM 30 O O3 YQ2 . . . G 3 8.225 -17.407 -26.42 1 124.08 ? O3 YQ2 1201 C 1 # _model_server_stats.io_time_ms 160 _model_server_stats.parse_time_ms 90 _model_server_stats.create_model_time_ms 216 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #