data_8V8X # _model_server_result.job_id 1g5triKvn94ByGl0zb2LlQ _model_server_result.datetime_utc '2024-12-26 21:55:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8V8X # _exptl.entry_id 8V8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V8X _cell.length_a 57.796 _cell.length_b 63.192 _cell.length_c 119.988 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 120 n n N H GLY sing 121 n n N H2 GLY sing 122 n n CA C GLY sing 123 n n CA HA2 GLY sing 124 n n CA HA3 GLY sing 125 n n C O GLY doub 126 n n C OXT GLY sing 127 n n OXT HXT GLY sing 128 n n # _atom_sites.entry_id 8V8X _atom_sites.fract_transf_matrix[1][1] 0.017302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 501 501 GLY GLY . C 3 HOH A 1 601 45 HOH HOH . C 3 HOH A 2 602 37 HOH HOH . C 3 HOH A 3 603 16 HOH HOH . C 3 HOH A 4 604 30 HOH HOH . C 3 HOH A 5 605 36 HOH HOH . C 3 HOH A 6 606 63 HOH HOH . C 3 HOH A 7 607 42 HOH HOH . C 3 HOH A 8 608 49 HOH HOH . C 3 HOH A 9 609 10 HOH HOH . C 3 HOH A 10 610 53 HOH HOH . C 3 HOH A 11 611 50 HOH HOH . C 3 HOH A 12 612 62 HOH HOH . C 3 HOH A 13 613 56 HOH HOH . C 3 HOH A 14 614 35 HOH HOH . C 3 HOH A 15 615 26 HOH HOH . C 3 HOH A 16 616 12 HOH HOH . C 3 HOH A 17 617 52 HOH HOH . C 3 HOH A 18 618 51 HOH HOH . C 3 HOH A 19 619 4 HOH HOH . C 3 HOH A 20 620 54 HOH HOH . C 3 HOH A 21 621 61 HOH HOH . C 3 HOH A 22 622 29 HOH HOH . C 3 HOH A 23 623 41 HOH HOH . C 3 HOH A 24 624 31 HOH HOH . C 3 HOH A 25 625 27 HOH HOH . C 3 HOH A 26 626 14 HOH HOH . C 3 HOH A 27 627 39 HOH HOH . C 3 HOH A 28 628 20 HOH HOH . C 3 HOH A 29 629 8 HOH HOH . C 3 HOH A 30 630 17 HOH HOH . C 3 HOH A 31 631 47 HOH HOH . C 3 HOH A 32 632 28 HOH HOH . C 3 HOH A 33 633 19 HOH HOH . C 3 HOH A 34 634 24 HOH HOH . C 3 HOH A 35 635 2 HOH HOH . C 3 HOH A 36 636 32 HOH HOH . C 3 HOH A 37 637 11 HOH HOH . C 3 HOH A 38 638 18 HOH HOH . C 3 HOH A 39 639 57 HOH HOH . C 3 HOH A 40 640 23 HOH HOH . C 3 HOH A 41 641 25 HOH HOH . C 3 HOH A 42 642 5 HOH HOH . C 3 HOH A 43 643 9 HOH HOH . C 3 HOH A 44 644 6 HOH HOH . C 3 HOH A 45 645 44 HOH HOH . C 3 HOH A 46 646 33 HOH HOH . C 3 HOH A 47 647 38 HOH HOH . C 3 HOH A 48 648 59 HOH HOH . C 3 HOH A 49 649 1 HOH HOH . C 3 HOH A 50 650 60 HOH HOH . C 3 HOH A 51 651 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . B 2 -21.177 -23.028 -4.485 1 60.4 ? N GLY 501 A 1 HETATM 2 C CA GLY . . . B 2 -21.175 -21.769 -5.206 1 57.95 ? CA GLY 501 A 1 HETATM 3 C C GLY . . . B 2 -20.044 -20.846 -4.791 1 55.21 ? C GLY 501 A 1 HETATM 4 O O GLY . . . B 2 -19.509 -20.094 -5.607 1 57.29 ? O GLY 501 A 1 HETATM 5 O OXT GLY . . . B 2 -19.636 -20.822 -3.629 1 59.14 ? OXT GLY 501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #