data_8V9G # _model_server_result.job_id fRGWXlxre9RV92hLapY3Fw _model_server_result.datetime_utc '2024-11-30 01:49:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":306}' # _entry.id 8V9G # _exptl.entry_id 8V9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V9G _cell.length_a 76.829 _cell.length_b 80.581 _cell.length_c 87.327 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 63 1_555 A SG CYS 233 A CYS 233 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 63 B CYS 63 1_555 B SG CYS 233 B CYS 233 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A OG SER 64 A SER 64 1_555 C C1 MER . A MER 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale2 B OG SER 64 B SER 64 1_555 H C1 MER . B MER 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? metalc ? metalc1 A OD1 ASP 94 A ASP 94 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8V9G _atom_sites.fract_transf_matrix[1][1] 0.013016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MER A 1 301 301 MER MER . D 3 EDO A 1 302 301 EDO EDO . E 3 EDO A 1 303 302 EDO EDO . F 4 IOD A 1 304 3 IOD IOD . G 5 MG A 1 305 1 MG MG . H 2 MER B 1 301 302 MER MER . I 3 EDO B 1 302 303 EDO EDO . J 3 EDO B 1 303 304 EDO EDO . K 4 IOD B 1 304 1 IOD IOD . L 4 IOD B 1 305 2 IOD IOD . M 4 IOD B 1 306 4 IOD IOD . N 6 HOH A 1 401 97 HOH HOH . N 6 HOH A 2 402 221 HOH HOH . N 6 HOH A 3 403 144 HOH HOH . N 6 HOH A 4 404 259 HOH HOH . N 6 HOH A 5 405 178 HOH HOH . N 6 HOH A 6 406 260 HOH HOH . N 6 HOH A 7 407 159 HOH HOH . N 6 HOH A 8 408 14 HOH HOH . N 6 HOH A 9 409 209 HOH HOH . N 6 HOH A 10 410 3 HOH HOH . N 6 HOH A 11 411 148 HOH HOH . N 6 HOH A 12 412 257 HOH HOH . N 6 HOH A 13 413 136 HOH HOH . N 6 HOH A 14 414 184 HOH HOH . N 6 HOH A 15 415 191 HOH HOH . N 6 HOH A 16 416 185 HOH HOH . N 6 HOH A 17 417 75 HOH HOH . N 6 HOH A 18 418 58 HOH HOH . N 6 HOH A 19 419 143 HOH HOH . N 6 HOH A 20 420 236 HOH HOH . N 6 HOH A 21 421 65 HOH HOH . N 6 HOH A 22 422 163 HOH HOH . N 6 HOH A 23 423 55 HOH HOH . N 6 HOH A 24 424 36 HOH HOH . N 6 HOH A 25 425 94 HOH HOH . N 6 HOH A 26 426 25 HOH HOH . N 6 HOH A 27 427 50 HOH HOH . N 6 HOH A 28 428 17 HOH HOH . N 6 HOH A 29 429 76 HOH HOH . N 6 HOH A 30 430 30 HOH HOH . N 6 HOH A 31 431 6 HOH HOH . N 6 HOH A 32 432 176 HOH HOH . N 6 HOH A 33 433 4 HOH HOH . N 6 HOH A 34 434 196 HOH HOH . N 6 HOH A 35 435 219 HOH HOH . N 6 HOH A 36 436 70 HOH HOH . N 6 HOH A 37 437 60 HOH HOH . N 6 HOH A 38 438 141 HOH HOH . N 6 HOH A 39 439 100 HOH HOH . N 6 HOH A 40 440 208 HOH HOH . N 6 HOH A 41 441 38 HOH HOH . N 6 HOH A 42 442 82 HOH HOH . N 6 HOH A 43 443 20 HOH HOH . N 6 HOH A 44 444 139 HOH HOH . N 6 HOH A 45 445 205 HOH HOH . N 6 HOH A 46 446 110 HOH HOH . N 6 HOH A 47 447 21 HOH HOH . N 6 HOH A 48 448 146 HOH HOH . N 6 HOH A 49 449 188 HOH HOH . N 6 HOH A 50 450 64 HOH HOH . N 6 HOH A 51 451 77 HOH HOH . N 6 HOH A 52 452 179 HOH HOH . N 6 HOH A 53 453 124 HOH HOH . N 6 HOH A 54 454 10 HOH HOH . N 6 HOH A 55 455 78 HOH HOH . N 6 HOH A 56 456 8 HOH HOH . N 6 HOH A 57 457 52 HOH HOH . N 6 HOH A 58 458 13 HOH HOH . N 6 HOH A 59 459 53 HOH HOH . N 6 HOH A 60 460 105 HOH HOH . N 6 HOH A 61 461 171 HOH HOH . N 6 HOH A 62 462 47 HOH HOH . N 6 HOH A 63 463 39 HOH HOH . N 6 HOH A 64 464 214 HOH HOH . N 6 HOH A 65 465 198 HOH HOH . N 6 HOH A 66 466 123 HOH HOH . N 6 HOH A 67 467 71 HOH HOH . N 6 HOH A 68 468 166 HOH HOH . N 6 HOH A 69 469 32 HOH HOH . N 6 HOH A 70 470 61 HOH HOH . N 6 HOH A 71 471 130 HOH HOH . N 6 HOH A 72 472 81 HOH HOH . N 6 HOH A 73 473 59 HOH HOH . N 6 HOH A 74 474 194 HOH HOH . N 6 HOH A 75 475 2 HOH HOH . N 6 HOH A 76 476 99 HOH HOH . N 6 HOH A 77 477 128 HOH HOH . N 6 HOH A 78 478 235 HOH HOH . N 6 HOH A 79 479 102 HOH HOH . N 6 HOH A 80 480 48 HOH HOH . N 6 HOH A 81 481 83 HOH HOH . N 6 HOH A 82 482 107 HOH HOH . N 6 HOH A 83 483 225 HOH HOH . N 6 HOH A 84 484 142 HOH HOH . N 6 HOH A 85 485 134 HOH HOH . N 6 HOH A 86 486 87 HOH HOH . N 6 HOH A 87 487 137 HOH HOH . N 6 HOH A 88 488 131 HOH HOH . N 6 HOH A 89 489 180 HOH HOH . N 6 HOH A 90 490 57 HOH HOH . N 6 HOH A 91 491 207 HOH HOH . N 6 HOH A 92 492 170 HOH HOH . N 6 HOH A 93 493 101 HOH HOH . N 6 HOH A 94 494 140 HOH HOH . N 6 HOH A 95 495 177 HOH HOH . N 6 HOH A 96 496 106 HOH HOH . N 6 HOH A 97 497 167 HOH HOH . N 6 HOH A 98 498 80 HOH HOH . N 6 HOH A 99 499 175 HOH HOH . N 6 HOH A 100 500 22 HOH HOH . N 6 HOH A 101 501 19 HOH HOH . N 6 HOH A 102 502 182 HOH HOH . N 6 HOH A 103 503 233 HOH HOH . N 6 HOH A 104 504 197 HOH HOH . N 6 HOH A 105 505 72 HOH HOH . N 6 HOH A 106 506 211 HOH HOH . N 6 HOH A 107 507 9 HOH HOH . N 6 HOH A 108 508 160 HOH HOH . N 6 HOH A 109 509 125 HOH HOH . N 6 HOH A 110 510 119 HOH HOH . N 6 HOH A 111 511 192 HOH HOH . N 6 HOH A 112 512 103 HOH HOH . N 6 HOH A 113 513 147 HOH HOH . N 6 HOH A 114 514 238 HOH HOH . N 6 HOH A 115 515 132 HOH HOH . N 6 HOH A 116 516 199 HOH HOH . N 6 HOH A 117 517 240 HOH HOH . N 6 HOH A 118 518 243 HOH HOH . N 6 HOH A 119 519 220 HOH HOH . N 6 HOH A 120 520 135 HOH HOH . N 6 HOH A 121 521 133 HOH HOH . N 6 HOH A 122 522 258 HOH HOH . N 6 HOH A 123 523 246 HOH HOH . N 6 HOH A 124 524 145 HOH HOH . N 6 HOH A 125 525 127 HOH HOH . N 6 HOH A 126 526 129 HOH HOH . N 6 HOH A 127 527 241 HOH HOH . O 6 HOH B 1 401 193 HOH HOH . O 6 HOH B 2 402 245 HOH HOH . O 6 HOH B 3 403 256 HOH HOH . O 6 HOH B 4 404 237 HOH HOH . O 6 HOH B 5 405 153 HOH HOH . O 6 HOH B 6 406 73 HOH HOH . O 6 HOH B 7 407 7 HOH HOH . O 6 HOH B 8 408 247 HOH HOH . O 6 HOH B 9 409 222 HOH HOH . O 6 HOH B 10 410 183 HOH HOH . O 6 HOH B 11 411 210 HOH HOH . O 6 HOH B 12 412 168 HOH HOH . O 6 HOH B 13 413 152 HOH HOH . O 6 HOH B 14 414 169 HOH HOH . O 6 HOH B 15 415 98 HOH HOH . O 6 HOH B 16 416 218 HOH HOH . O 6 HOH B 17 417 173 HOH HOH . O 6 HOH B 18 418 54 HOH HOH . O 6 HOH B 19 419 91 HOH HOH . O 6 HOH B 20 420 34 HOH HOH . O 6 HOH B 21 421 217 HOH HOH . O 6 HOH B 22 422 253 HOH HOH . O 6 HOH B 23 423 74 HOH HOH . O 6 HOH B 24 424 5 HOH HOH . O 6 HOH B 25 425 11 HOH HOH . O 6 HOH B 26 426 157 HOH HOH . O 6 HOH B 27 427 150 HOH HOH . O 6 HOH B 28 428 202 HOH HOH . O 6 HOH B 29 429 95 HOH HOH . O 6 HOH B 30 430 51 HOH HOH . O 6 HOH B 31 431 151 HOH HOH . O 6 HOH B 32 432 195 HOH HOH . O 6 HOH B 33 433 66 HOH HOH . O 6 HOH B 34 434 31 HOH HOH . O 6 HOH B 35 435 155 HOH HOH . O 6 HOH B 36 436 227 HOH HOH . O 6 HOH B 37 437 122 HOH HOH . O 6 HOH B 38 438 120 HOH HOH . O 6 HOH B 39 439 28 HOH HOH . O 6 HOH B 40 440 85 HOH HOH . O 6 HOH B 41 441 154 HOH HOH . O 6 HOH B 42 442 114 HOH HOH . O 6 HOH B 43 443 68 HOH HOH . O 6 HOH B 44 444 165 HOH HOH . O 6 HOH B 45 445 156 HOH HOH . O 6 HOH B 46 446 161 HOH HOH . O 6 HOH B 47 447 24 HOH HOH . O 6 HOH B 48 448 117 HOH HOH . O 6 HOH B 49 449 43 HOH HOH . O 6 HOH B 50 450 162 HOH HOH . O 6 HOH B 51 451 26 HOH HOH . O 6 HOH B 52 452 23 HOH HOH . O 6 HOH B 53 453 174 HOH HOH . O 6 HOH B 54 454 229 HOH HOH . O 6 HOH B 55 455 18 HOH HOH . O 6 HOH B 56 456 187 HOH HOH . O 6 HOH B 57 457 108 HOH HOH . O 6 HOH B 58 458 212 HOH HOH . O 6 HOH B 59 459 45 HOH HOH . O 6 HOH B 60 460 63 HOH HOH . O 6 HOH B 61 461 49 HOH HOH . O 6 HOH B 62 462 86 HOH HOH . O 6 HOH B 63 463 56 HOH HOH . O 6 HOH B 64 464 93 HOH HOH . O 6 HOH B 65 465 230 HOH HOH . O 6 HOH B 66 466 69 HOH HOH . O 6 HOH B 67 467 37 HOH HOH . O 6 HOH B 68 468 29 HOH HOH . O 6 HOH B 69 469 201 HOH HOH . O 6 HOH B 70 470 79 HOH HOH . O 6 HOH B 71 471 172 HOH HOH . O 6 HOH B 72 472 109 HOH HOH . O 6 HOH B 73 473 226 HOH HOH . O 6 HOH B 74 474 62 HOH HOH . O 6 HOH B 75 475 27 HOH HOH . O 6 HOH B 76 476 252 HOH HOH . O 6 HOH B 77 477 190 HOH HOH . O 6 HOH B 78 478 121 HOH HOH . O 6 HOH B 79 479 216 HOH HOH . O 6 HOH B 80 480 158 HOH HOH . O 6 HOH B 81 481 249 HOH HOH . O 6 HOH B 82 482 88 HOH HOH . O 6 HOH B 83 483 90 HOH HOH . O 6 HOH B 84 484 116 HOH HOH . O 6 HOH B 85 485 111 HOH HOH . O 6 HOH B 86 486 181 HOH HOH . O 6 HOH B 87 487 213 HOH HOH . O 6 HOH B 88 488 89 HOH HOH . O 6 HOH B 89 489 33 HOH HOH . O 6 HOH B 90 490 224 HOH HOH . O 6 HOH B 91 491 189 HOH HOH . O 6 HOH B 92 492 118 HOH HOH . O 6 HOH B 93 493 200 HOH HOH . O 6 HOH B 94 494 115 HOH HOH . O 6 HOH B 95 495 255 HOH HOH . O 6 HOH B 96 496 40 HOH HOH . O 6 HOH B 97 497 16 HOH HOH . O 6 HOH B 98 498 46 HOH HOH . O 6 HOH B 99 499 206 HOH HOH . O 6 HOH B 100 500 186 HOH HOH . O 6 HOH B 101 501 149 HOH HOH . O 6 HOH B 102 502 215 HOH HOH . O 6 HOH B 103 503 239 HOH HOH . O 6 HOH B 104 504 104 HOH HOH . O 6 HOH B 105 505 42 HOH HOH . O 6 HOH B 106 506 228 HOH HOH . O 6 HOH B 107 507 164 HOH HOH . O 6 HOH B 108 508 15 HOH HOH . O 6 HOH B 109 509 113 HOH HOH . O 6 HOH B 110 510 250 HOH HOH . O 6 HOH B 111 511 248 HOH HOH . O 6 HOH B 112 512 126 HOH HOH . O 6 HOH B 113 513 254 HOH HOH . O 6 HOH B 114 514 203 HOH HOH . O 6 HOH B 115 515 242 HOH HOH . O 6 HOH B 116 516 204 HOH HOH . O 6 HOH B 117 517 231 HOH HOH . O 6 HOH B 118 518 251 HOH HOH . O 6 HOH B 119 519 232 HOH HOH . O 6 HOH B 120 520 244 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x -39.537 _atom_site.Cartn_y -4.549 _atom_site.Cartn_z 7.769 _atom_site.occupancy 0.94 _atom_site.B_iso_or_equiv 31.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 306 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #