data_8V9X # _model_server_result.job_id T2UzgbLhgSwohCXg-ThtPQ _model_server_result.datetime_utc '2024-10-12 19:22:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8v9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8V9X # _exptl.entry_id 8V9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8V9X _cell.length_a 44.791 _cell.length_b 109.067 _cell.length_c 50.199 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8V9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 25.0995 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 23 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 96 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 95 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.109 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 138 n n C1 C2 EDO sing 139 n n C1 H11 EDO sing 140 n n C1 H12 EDO sing 141 n n O1 HO1 EDO sing 142 n n C2 O2 EDO sing 143 n n C2 H21 EDO sing 144 n n C2 H22 EDO sing 145 n n O2 HO2 EDO sing 146 n n # _atom_sites.entry_id 8V9X _atom_sites.fract_transf_matrix[1][1] 0.022326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7V7 A 1 200 200 7V7 LIG . C 3 EDO A 1 201 201 EDO EDO . D 4 HOH A 1 301 58 HOH HOH . D 4 HOH A 2 302 90 HOH HOH . D 4 HOH A 3 303 123 HOH HOH . D 4 HOH A 4 304 61 HOH HOH . D 4 HOH A 5 305 68 HOH HOH . D 4 HOH A 6 306 116 HOH HOH . D 4 HOH A 7 307 21 HOH HOH . D 4 HOH A 8 308 22 HOH HOH . D 4 HOH A 9 309 66 HOH HOH . D 4 HOH A 10 310 19 HOH HOH . D 4 HOH A 11 311 11 HOH HOH . D 4 HOH A 12 312 47 HOH HOH . D 4 HOH A 13 313 70 HOH HOH . D 4 HOH A 14 314 35 HOH HOH . D 4 HOH A 15 315 53 HOH HOH . D 4 HOH A 16 316 50 HOH HOH . D 4 HOH A 17 317 7 HOH HOH . D 4 HOH A 18 318 18 HOH HOH . D 4 HOH A 19 319 121 HOH HOH . D 4 HOH A 20 320 93 HOH HOH . D 4 HOH A 21 321 6 HOH HOH . D 4 HOH A 22 322 4 HOH HOH . D 4 HOH A 23 323 30 HOH HOH . D 4 HOH A 24 324 40 HOH HOH . D 4 HOH A 25 325 87 HOH HOH . D 4 HOH A 26 326 60 HOH HOH . D 4 HOH A 27 327 3 HOH HOH . D 4 HOH A 28 328 32 HOH HOH . D 4 HOH A 29 329 82 HOH HOH . D 4 HOH A 30 330 28 HOH HOH . D 4 HOH A 31 331 8 HOH HOH . D 4 HOH A 32 332 112 HOH HOH . D 4 HOH A 33 333 17 HOH HOH . D 4 HOH A 34 334 25 HOH HOH . D 4 HOH A 35 335 95 HOH HOH . D 4 HOH A 36 336 100 HOH HOH . D 4 HOH A 37 337 2 HOH HOH . D 4 HOH A 38 338 37 HOH HOH . D 4 HOH A 39 339 64 HOH HOH . D 4 HOH A 40 340 44 HOH HOH . D 4 HOH A 41 341 75 HOH HOH . D 4 HOH A 42 342 72 HOH HOH . D 4 HOH A 43 343 46 HOH HOH . D 4 HOH A 44 344 16 HOH HOH . D 4 HOH A 45 345 94 HOH HOH . D 4 HOH A 46 346 33 HOH HOH . D 4 HOH A 47 347 59 HOH HOH . D 4 HOH A 48 348 69 HOH HOH . D 4 HOH A 49 349 117 HOH HOH . D 4 HOH A 50 350 54 HOH HOH . D 4 HOH A 51 351 9 HOH HOH . D 4 HOH A 52 352 36 HOH HOH . D 4 HOH A 53 353 49 HOH HOH . D 4 HOH A 54 354 43 HOH HOH . D 4 HOH A 55 355 91 HOH HOH . D 4 HOH A 56 356 48 HOH HOH . D 4 HOH A 57 357 26 HOH HOH . D 4 HOH A 58 358 55 HOH HOH . D 4 HOH A 59 359 74 HOH HOH . D 4 HOH A 60 360 113 HOH HOH . D 4 HOH A 61 361 14 HOH HOH . D 4 HOH A 62 362 1 HOH HOH . D 4 HOH A 63 363 110 HOH HOH . D 4 HOH A 64 364 34 HOH HOH . D 4 HOH A 65 365 12 HOH HOH . D 4 HOH A 66 366 15 HOH HOH . D 4 HOH A 67 367 76 HOH HOH . D 4 HOH A 68 368 99 HOH HOH . D 4 HOH A 69 369 31 HOH HOH . D 4 HOH A 70 370 29 HOH HOH . D 4 HOH A 71 371 105 HOH HOH . D 4 HOH A 72 372 23 HOH HOH . D 4 HOH A 73 373 51 HOH HOH . D 4 HOH A 74 374 120 HOH HOH . D 4 HOH A 75 375 5 HOH HOH . D 4 HOH A 76 376 63 HOH HOH . D 4 HOH A 77 377 79 HOH HOH . D 4 HOH A 78 378 38 HOH HOH . D 4 HOH A 79 379 62 HOH HOH . D 4 HOH A 80 380 84 HOH HOH . D 4 HOH A 81 381 119 HOH HOH . D 4 HOH A 82 382 111 HOH HOH . D 4 HOH A 83 383 73 HOH HOH . D 4 HOH A 84 384 20 HOH HOH . D 4 HOH A 85 385 109 HOH HOH . D 4 HOH A 86 386 13 HOH HOH . D 4 HOH A 87 387 39 HOH HOH . D 4 HOH A 88 388 65 HOH HOH . D 4 HOH A 89 389 101 HOH HOH . D 4 HOH A 90 390 57 HOH HOH . D 4 HOH A 91 391 122 HOH HOH . D 4 HOH A 92 392 89 HOH HOH . D 4 HOH A 93 393 102 HOH HOH . D 4 HOH A 94 394 83 HOH HOH . D 4 HOH A 95 395 77 HOH HOH . D 4 HOH A 96 396 27 HOH HOH . D 4 HOH A 97 397 98 HOH HOH . D 4 HOH A 98 398 115 HOH HOH . D 4 HOH A 99 399 81 HOH HOH . D 4 HOH A 100 400 96 HOH HOH . D 4 HOH A 101 401 80 HOH HOH . D 4 HOH A 102 402 52 HOH HOH . D 4 HOH A 103 403 92 HOH HOH . D 4 HOH A 104 404 103 HOH HOH . D 4 HOH A 105 405 56 HOH HOH . D 4 HOH A 106 406 85 HOH HOH . D 4 HOH A 107 407 118 HOH HOH . D 4 HOH A 108 408 42 HOH HOH . D 4 HOH A 109 409 106 HOH HOH . D 4 HOH A 110 410 24 HOH HOH . D 4 HOH A 111 411 104 HOH HOH . D 4 HOH A 112 412 125 HOH HOH . D 4 HOH A 113 413 88 HOH HOH . D 4 HOH A 114 414 67 HOH HOH . D 4 HOH A 115 415 71 HOH HOH . D 4 HOH A 116 416 108 HOH HOH . D 4 HOH A 117 417 45 HOH HOH . D 4 HOH A 118 418 107 HOH HOH . D 4 HOH A 119 419 10 HOH HOH . D 4 HOH A 120 420 41 HOH HOH . D 4 HOH A 121 421 114 HOH HOH . D 4 HOH A 122 422 124 HOH HOH . D 4 HOH A 123 423 86 HOH HOH . D 4 HOH A 124 424 97 HOH HOH . D 4 HOH A 125 425 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 0.343 -22.465 15.97 1 49.57 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . C 3 1.275 -22.996 16.93 1 36.99 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . C 3 0.987 -22.35 14.589 1 45.28 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . C 3 0.002 -21.972 13.606 1 46.48 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #