data_8VAB # _model_server_result.job_id GvGdCuku1kKDtrvSDz2VJQ _model_server_result.datetime_utc '2024-12-01 02:08:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8VAB # _exptl.entry_id 8VAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VAB _cell.length_a 92.882 _cell.length_b 92.882 _cell.length_c 122.743 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -92.882 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 101 A GLU 81 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc2 A OE2 GLU 101 A GLU 81 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc3 A ND1 HIS 108 A HIS 88 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc4 A OE2 GLU 162 A GLU 142 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc5 A NE2 HIS 194 A HIS 174 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 A OD1 ASP 198 A ASP 178 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc7 A ND1 HIS 201 A HIS 181 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc8 B FE FE2 . A FE2 301 1_555 D O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc9 B FE FE2 . A FE2 301 1_555 D O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc10 C FE FE2 . A FE2 302 1_555 D O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 C FE FE2 . A FE2 302 1_555 D O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8VAB _atom_sites.fract_transf_matrix[1][1] 0.010766 _atom_sites.fract_transf_matrix[1][2] 0.006216 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 301 1 FE2 FE2 . C 2 FE2 A 1 302 2 FE2 FE2 . D 3 HOH A 1 401 3 HOH HOH . D 3 HOH A 2 402 28 HOH HOH . D 3 HOH A 3 403 31 HOH HOH . D 3 HOH A 4 404 24 HOH HOH . D 3 HOH A 5 405 6 HOH HOH . D 3 HOH A 6 406 19 HOH HOH . D 3 HOH A 7 407 15 HOH HOH . D 3 HOH A 8 408 22 HOH HOH . D 3 HOH A 9 409 13 HOH HOH . D 3 HOH A 10 410 29 HOH HOH . D 3 HOH A 11 411 11 HOH HOH . D 3 HOH A 12 412 23 HOH HOH . D 3 HOH A 13 413 7 HOH HOH . D 3 HOH A 14 414 4 HOH HOH . D 3 HOH A 15 415 20 HOH HOH . D 3 HOH A 16 416 12 HOH HOH . D 3 HOH A 17 417 25 HOH HOH . D 3 HOH A 18 418 5 HOH HOH . D 3 HOH A 19 419 14 HOH HOH . D 3 HOH A 20 420 17 HOH HOH . D 3 HOH A 21 421 10 HOH HOH . D 3 HOH A 22 422 16 HOH HOH . D 3 HOH A 23 423 21 HOH HOH . D 3 HOH A 24 424 9 HOH HOH . D 3 HOH A 25 425 1 HOH HOH . D 3 HOH A 26 426 2 HOH HOH . D 3 HOH A 27 427 30 HOH HOH . D 3 HOH A 28 428 26 HOH HOH . D 3 HOH A 29 429 8 HOH HOH . D 3 HOH A 30 430 32 HOH HOH . D 3 HOH A 31 431 27 HOH HOH . D 3 HOH A 32 432 18 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -41.759 _atom_site.Cartn_y 12.698 _atom_site.Cartn_z 20.632 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #