data_8VAI
#
_model_server_result.job_id            lZZrQY2wRqurqFwGFkCH0w 
_model_server_result.datetime_utc      '2024-11-28 08:32:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vai 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8VAI 
#
_exptl.entry_id    8VAI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8VAI 
_cell.length_a            94.528 
_cell.length_b            94.528 
_cell.length_c            120.673 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VAI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,E 1 1 
A,C,D 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_454 -x-1,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 -94.528 0 -40.224333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8VAI 
_atom_sites.fract_transf_matrix[1][1]    0.010579 
_atom_sites.fract_transf_matrix[1][2]    0.006108 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 301 301 GOL GOL . 
D 3 HOH A 1 401 235 HOH HOH . 
D 3 HOH A 2 402 246 HOH HOH . 
D 3 HOH A 3 403 47 HOH HOH . 
D 3 HOH A 4 404 80 HOH HOH . 
D 3 HOH A 5 405 17 HOH HOH . 
D 3 HOH A 6 406 49 HOH HOH . 
D 3 HOH A 7 407 163 HOH HOH . 
D 3 HOH A 8 408 122 HOH HOH . 
D 3 HOH A 9 409 190 HOH HOH . 
D 3 HOH A 10 410 89 HOH HOH . 
D 3 HOH A 11 411 215 HOH HOH . 
D 3 HOH A 12 412 224 HOH HOH . 
D 3 HOH A 13 413 233 HOH HOH . 
D 3 HOH A 14 414 196 HOH HOH . 
D 3 HOH A 15 415 14 HOH HOH . 
D 3 HOH A 16 416 210 HOH HOH . 
D 3 HOH A 17 417 72 HOH HOH . 
D 3 HOH A 18 418 50 HOH HOH . 
D 3 HOH A 19 419 213 HOH HOH . 
D 3 HOH A 20 420 117 HOH HOH . 
D 3 HOH A 21 421 183 HOH HOH . 
D 3 HOH A 22 422 152 HOH HOH . 
D 3 HOH A 23 423 81 HOH HOH . 
D 3 HOH A 24 424 4 HOH HOH . 
D 3 HOH A 25 425 31 HOH HOH . 
D 3 HOH A 26 426 2 HOH HOH . 
D 3 HOH A 27 427 203 HOH HOH . 
D 3 HOH A 28 428 112 HOH HOH . 
D 3 HOH A 29 429 245 HOH HOH . 
D 3 HOH A 30 430 142 HOH HOH . 
D 3 HOH A 31 431 8 HOH HOH . 
D 3 HOH A 32 432 46 HOH HOH . 
D 3 HOH A 33 433 193 HOH HOH . 
D 3 HOH A 34 434 3 HOH HOH . 
D 3 HOH A 35 435 20 HOH HOH . 
D 3 HOH A 36 436 74 HOH HOH . 
D 3 HOH A 37 437 211 HOH HOH . 
D 3 HOH A 38 438 241 HOH HOH . 
D 3 HOH A 39 439 126 HOH HOH . 
D 3 HOH A 40 440 184 HOH HOH . 
D 3 HOH A 41 441 250 HOH HOH . 
D 3 HOH A 42 442 45 HOH HOH . 
D 3 HOH A 43 443 140 HOH HOH . 
D 3 HOH A 44 444 26 HOH HOH . 
D 3 HOH A 45 445 125 HOH HOH . 
D 3 HOH A 46 446 106 HOH HOH . 
D 3 HOH A 47 447 115 HOH HOH . 
D 3 HOH A 48 448 252 HOH HOH . 
D 3 HOH A 49 449 132 HOH HOH . 
D 3 HOH A 50 450 63 HOH HOH . 
D 3 HOH A 51 451 27 HOH HOH . 
D 3 HOH A 52 452 232 HOH HOH . 
D 3 HOH A 53 453 220 HOH HOH . 
D 3 HOH A 54 454 84 HOH HOH . 
D 3 HOH A 55 455 231 HOH HOH . 
D 3 HOH A 56 456 69 HOH HOH . 
D 3 HOH A 57 457 7 HOH HOH . 
D 3 HOH A 58 458 107 HOH HOH . 
D 3 HOH A 59 459 181 HOH HOH . 
D 3 HOH A 60 460 9 HOH HOH . 
D 3 HOH A 61 461 96 HOH HOH . 
D 3 HOH A 62 462 154 HOH HOH . 
D 3 HOH A 63 463 244 HOH HOH . 
D 3 HOH A 64 464 94 HOH HOH . 
D 3 HOH A 65 465 44 HOH HOH . 
D 3 HOH A 66 466 29 HOH HOH . 
D 3 HOH A 67 467 33 HOH HOH . 
D 3 HOH A 68 468 178 HOH HOH . 
D 3 HOH A 69 469 16 HOH HOH . 
D 3 HOH A 70 470 98 HOH HOH . 
D 3 HOH A 71 471 78 HOH HOH . 
D 3 HOH A 72 472 52 HOH HOH . 
D 3 HOH A 73 473 6 HOH HOH . 
D 3 HOH A 74 474 124 HOH HOH . 
D 3 HOH A 75 475 225 HOH HOH . 
D 3 HOH A 76 476 18 HOH HOH . 
D 3 HOH A 77 477 110 HOH HOH . 
D 3 HOH A 78 478 92 HOH HOH . 
D 3 HOH A 79 479 37 HOH HOH . 
D 3 HOH A 80 480 64 HOH HOH . 
D 3 HOH A 81 481 65 HOH HOH . 
D 3 HOH A 82 482 236 HOH HOH . 
D 3 HOH A 83 483 227 HOH HOH . 
D 3 HOH A 84 484 251 HOH HOH . 
D 3 HOH A 85 485 194 HOH HOH . 
D 3 HOH A 86 486 76 HOH HOH . 
D 3 HOH A 87 487 230 HOH HOH . 
D 3 HOH A 88 488 68 HOH HOH . 
D 3 HOH A 89 489 51 HOH HOH . 
D 3 HOH A 90 490 36 HOH HOH . 
D 3 HOH A 91 491 40 HOH HOH . 
D 3 HOH A 92 492 169 HOH HOH . 
D 3 HOH A 93 493 229 HOH HOH . 
D 3 HOH A 94 494 141 HOH HOH . 
D 3 HOH A 95 495 54 HOH HOH . 
D 3 HOH A 96 496 144 HOH HOH . 
D 3 HOH A 97 497 174 HOH HOH . 
D 3 HOH A 98 498 187 HOH HOH . 
D 3 HOH A 99 499 239 HOH HOH . 
D 3 HOH A 100 500 191 HOH HOH . 
D 3 HOH A 101 501 104 HOH HOH . 
D 3 HOH A 102 502 109 HOH HOH . 
D 3 HOH A 103 503 186 HOH HOH . 
D 3 HOH A 104 504 113 HOH HOH . 
D 3 HOH A 105 505 147 HOH HOH . 
D 3 HOH A 106 506 131 HOH HOH . 
D 3 HOH A 107 507 201 HOH HOH . 
D 3 HOH A 108 508 226 HOH HOH . 
D 3 HOH A 109 509 145 HOH HOH . 
D 3 HOH A 110 510 116 HOH HOH . 
D 3 HOH A 111 511 57 HOH HOH . 
D 3 HOH A 112 512 228 HOH HOH . 
D 3 HOH A 113 513 164 HOH HOH . 
D 3 HOH A 114 514 137 HOH HOH . 
D 3 HOH A 115 515 175 HOH HOH . 
D 3 HOH A 116 516 19 HOH HOH . 
D 3 HOH A 117 517 221 HOH HOH . 
D 3 HOH A 118 518 87 HOH HOH . 
D 3 HOH A 119 519 85 HOH HOH . 
D 3 HOH A 120 520 200 HOH HOH . 
D 3 HOH A 121 521 119 HOH HOH . 
D 3 HOH A 122 522 249 HOH HOH . 
D 3 HOH A 123 523 105 HOH HOH . 
D 3 HOH A 124 524 173 HOH HOH . 
D 3 HOH A 125 525 189 HOH HOH . 
D 3 HOH A 126 526 176 HOH HOH . 
D 3 HOH A 127 527 160 HOH HOH . 
D 3 HOH A 128 528 146 HOH HOH . 
D 3 HOH A 129 529 101 HOH HOH . 
D 3 HOH A 130 530 157 HOH HOH . 
D 3 HOH A 131 531 114 HOH HOH . 
D 3 HOH A 132 532 177 HOH HOH . 
D 3 HOH A 133 533 202 HOH HOH . 
D 3 HOH A 134 534 129 HOH HOH . 
D 3 HOH A 135 535 165 HOH HOH . 
D 3 HOH A 136 536 214 HOH HOH . 
D 3 HOH A 137 537 216 HOH HOH . 
D 3 HOH A 138 538 195 HOH HOH . 
D 3 HOH A 139 539 95 HOH HOH . 
D 3 HOH A 140 540 150 HOH HOH . 
D 3 HOH A 141 541 212 HOH HOH . 
D 3 HOH A 142 542 103 HOH HOH . 
E 3 HOH B 1 301 41 HOH HOH . 
E 3 HOH B 2 302 149 HOH HOH . 
E 3 HOH B 3 303 237 HOH HOH . 
E 3 HOH B 4 304 23 HOH HOH . 
E 3 HOH B 5 305 185 HOH HOH . 
E 3 HOH B 6 306 151 HOH HOH . 
E 3 HOH B 7 307 139 HOH HOH . 
E 3 HOH B 8 308 167 HOH HOH . 
E 3 HOH B 9 309 75 HOH HOH . 
E 3 HOH B 10 310 197 HOH HOH . 
E 3 HOH B 11 311 138 HOH HOH . 
E 3 HOH B 12 312 97 HOH HOH . 
E 3 HOH B 13 313 62 HOH HOH . 
E 3 HOH B 14 314 170 HOH HOH . 
E 3 HOH B 15 315 207 HOH HOH . 
E 3 HOH B 16 316 71 HOH HOH . 
E 3 HOH B 17 317 67 HOH HOH . 
E 3 HOH B 18 318 108 HOH HOH . 
E 3 HOH B 19 319 218 HOH HOH . 
E 3 HOH B 20 320 73 HOH HOH . 
E 3 HOH B 21 321 11 HOH HOH . 
E 3 HOH B 22 322 240 HOH HOH . 
E 3 HOH B 23 323 166 HOH HOH . 
E 3 HOH B 24 324 5 HOH HOH . 
E 3 HOH B 25 325 21 HOH HOH . 
E 3 HOH B 26 326 53 HOH HOH . 
E 3 HOH B 27 327 13 HOH HOH . 
E 3 HOH B 28 328 253 HOH HOH . 
E 3 HOH B 29 329 10 HOH HOH . 
E 3 HOH B 30 330 66 HOH HOH . 
E 3 HOH B 31 331 143 HOH HOH . 
E 3 HOH B 32 332 91 HOH HOH . 
E 3 HOH B 33 333 127 HOH HOH . 
E 3 HOH B 34 334 179 HOH HOH . 
E 3 HOH B 35 335 25 HOH HOH . 
E 3 HOH B 36 336 38 HOH HOH . 
E 3 HOH B 37 337 22 HOH HOH . 
E 3 HOH B 38 338 99 HOH HOH . 
E 3 HOH B 39 339 205 HOH HOH . 
E 3 HOH B 40 340 238 HOH HOH . 
E 3 HOH B 41 341 12 HOH HOH . 
E 3 HOH B 42 342 120 HOH HOH . 
E 3 HOH B 43 343 28 HOH HOH . 
E 3 HOH B 44 344 1 HOH HOH . 
E 3 HOH B 45 345 155 HOH HOH . 
E 3 HOH B 46 346 86 HOH HOH . 
E 3 HOH B 47 347 136 HOH HOH . 
E 3 HOH B 48 348 121 HOH HOH . 
E 3 HOH B 49 349 247 HOH HOH . 
E 3 HOH B 50 350 158 HOH HOH . 
E 3 HOH B 51 351 42 HOH HOH . 
E 3 HOH B 52 352 135 HOH HOH . 
E 3 HOH B 53 353 248 HOH HOH . 
E 3 HOH B 54 354 15 HOH HOH . 
E 3 HOH B 55 355 82 HOH HOH . 
E 3 HOH B 56 356 204 HOH HOH . 
E 3 HOH B 57 357 123 HOH HOH . 
E 3 HOH B 58 358 34 HOH HOH . 
E 3 HOH B 59 359 30 HOH HOH . 
E 3 HOH B 60 360 48 HOH HOH . 
E 3 HOH B 61 361 59 HOH HOH . 
E 3 HOH B 62 362 39 HOH HOH . 
E 3 HOH B 63 363 188 HOH HOH . 
E 3 HOH B 64 364 111 HOH HOH . 
E 3 HOH B 65 365 168 HOH HOH . 
E 3 HOH B 66 366 130 HOH HOH . 
E 3 HOH B 67 367 118 HOH HOH . 
E 3 HOH B 68 368 156 HOH HOH . 
E 3 HOH B 69 369 60 HOH HOH . 
E 3 HOH B 70 370 35 HOH HOH . 
E 3 HOH B 71 371 223 HOH HOH . 
E 3 HOH B 72 372 61 HOH HOH . 
E 3 HOH B 73 373 55 HOH HOH . 
E 3 HOH B 74 374 182 HOH HOH . 
E 3 HOH B 75 375 32 HOH HOH . 
E 3 HOH B 76 376 43 HOH HOH . 
E 3 HOH B 77 377 83 HOH HOH . 
E 3 HOH B 78 378 180 HOH HOH . 
E 3 HOH B 79 379 153 HOH HOH . 
E 3 HOH B 80 380 134 HOH HOH . 
E 3 HOH B 81 381 199 HOH HOH . 
E 3 HOH B 82 382 56 HOH HOH . 
E 3 HOH B 83 383 206 HOH HOH . 
E 3 HOH B 84 384 192 HOH HOH . 
E 3 HOH B 85 385 219 HOH HOH . 
E 3 HOH B 86 386 100 HOH HOH . 
E 3 HOH B 87 387 77 HOH HOH . 
E 3 HOH B 88 388 133 HOH HOH . 
E 3 HOH B 89 389 198 HOH HOH . 
E 3 HOH B 90 390 242 HOH HOH . 
E 3 HOH B 91 391 93 HOH HOH . 
E 3 HOH B 92 392 24 HOH HOH . 
E 3 HOH B 93 393 102 HOH HOH . 
E 3 HOH B 94 394 243 HOH HOH . 
E 3 HOH B 95 395 88 HOH HOH . 
E 3 HOH B 96 396 171 HOH HOH . 
E 3 HOH B 97 397 90 HOH HOH . 
E 3 HOH B 98 398 79 HOH HOH . 
E 3 HOH B 99 399 217 HOH HOH . 
E 3 HOH B 100 400 159 HOH HOH . 
E 3 HOH B 101 401 208 HOH HOH . 
E 3 HOH B 102 402 172 HOH HOH . 
E 3 HOH B 103 403 58 HOH HOH . 
E 3 HOH B 104 404 128 HOH HOH . 
E 3 HOH B 105 405 161 HOH HOH . 
E 3 HOH B 106 406 162 HOH HOH . 
E 3 HOH B 107 407 209 HOH HOH . 
E 3 HOH B 108 408 148 HOH HOH . 
E 3 HOH B 109 409 222 HOH HOH . 
E 3 HOH B 110 410 234 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -46.925 29.728 -15.213 0.92 57.88 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . C 2 -47.981 29.941 -16.087 0.92 51.28 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . C 2 -46.18 28.444 -15.679 0.92 65.13 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . C 2 -46.049 28.359 -17.069 0.92 62.43 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . C 2 -44.806 28.488 -14.922 0.92 58.31 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . C 2 -43.844 27.928 -15.775 0.92 47.28 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#