data_8VB5
#
_model_server_result.job_id            3y2I-HQVEIHzD2vJZt93pw 
_model_server_result.datetime_utc      '2024-12-22 02:00:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vb5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1106}' 
#
_entry.id    8VB5 
#
_exptl.entry_id    8VB5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VB5 
_cell.length_a            34.412 
_cell.length_b            81.699 
_cell.length_c            94.936 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 148 n n 
C1 C2 EDO sing 149 n n 
C1 H11 EDO sing 150 n n 
C1 H12 EDO sing 151 n n 
O1 HO1 EDO sing 152 n n 
C2 O2 EDO sing 153 n n 
C2 H21 EDO sing 154 n n 
C2 H22 EDO sing 155 n n 
O2 HO2 EDO sing 156 n n 
#
_atom_sites.entry_id                     8VB5 
_atom_sites.fract_transf_matrix[1][1]    0.02906 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01224 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1AAC A 1 1101 1 A1AAC LIG . 
C 3 EDO A 1 1102 1 EDO EDO . 
D 3 EDO A 1 1103 2 EDO EDO . 
E 3 EDO A 1 1104 3 EDO EDO . 
F 3 EDO A 1 1105 4 EDO EDO . 
G 3 EDO A 1 1106 5 EDO EDO . 
H 3 EDO A 1 1107 6 EDO EDO . 
I 4 CL A 1 1108 1 CL CL . 
J 5 PEG A 1 1109 1 PEG PEG . 
K 6 HOH A 1 1201 245 HOH HOH . 
K 6 HOH A 2 1202 228 HOH HOH . 
K 6 HOH A 3 1203 236 HOH HOH . 
K 6 HOH A 4 1204 53 HOH HOH . 
K 6 HOH A 5 1205 241 HOH HOH . 
K 6 HOH A 6 1206 161 HOH HOH . 
K 6 HOH A 7 1207 157 HOH HOH . 
K 6 HOH A 8 1208 24 HOH HOH . 
K 6 HOH A 9 1209 182 HOH HOH . 
K 6 HOH A 10 1210 163 HOH HOH . 
K 6 HOH A 11 1211 100 HOH HOH . 
K 6 HOH A 12 1212 91 HOH HOH . 
K 6 HOH A 13 1213 165 HOH HOH . 
K 6 HOH A 14 1214 28 HOH HOH . 
K 6 HOH A 15 1215 185 HOH HOH . 
K 6 HOH A 16 1216 123 HOH HOH . 
K 6 HOH A 17 1217 96 HOH HOH . 
K 6 HOH A 18 1218 114 HOH HOH . 
K 6 HOH A 19 1219 170 HOH HOH . 
K 6 HOH A 20 1220 144 HOH HOH . 
K 6 HOH A 21 1221 181 HOH HOH . 
K 6 HOH A 22 1222 143 HOH HOH . 
K 6 HOH A 23 1223 195 HOH HOH . 
K 6 HOH A 24 1224 47 HOH HOH . 
K 6 HOH A 25 1225 73 HOH HOH . 
K 6 HOH A 26 1226 58 HOH HOH . 
K 6 HOH A 27 1227 133 HOH HOH . 
K 6 HOH A 28 1228 75 HOH HOH . 
K 6 HOH A 29 1229 79 HOH HOH . 
K 6 HOH A 30 1230 81 HOH HOH . 
K 6 HOH A 31 1231 135 HOH HOH . 
K 6 HOH A 32 1232 4 HOH HOH . 
K 6 HOH A 33 1233 224 HOH HOH . 
K 6 HOH A 34 1234 10 HOH HOH . 
K 6 HOH A 35 1235 183 HOH HOH . 
K 6 HOH A 36 1236 125 HOH HOH . 
K 6 HOH A 37 1237 80 HOH HOH . 
K 6 HOH A 38 1238 97 HOH HOH . 
K 6 HOH A 39 1239 175 HOH HOH . 
K 6 HOH A 40 1240 205 HOH HOH . 
K 6 HOH A 41 1241 140 HOH HOH . 
K 6 HOH A 42 1242 209 HOH HOH . 
K 6 HOH A 43 1243 138 HOH HOH . 
K 6 HOH A 44 1244 49 HOH HOH . 
K 6 HOH A 45 1245 15 HOH HOH . 
K 6 HOH A 46 1246 132 HOH HOH . 
K 6 HOH A 47 1247 59 HOH HOH . 
K 6 HOH A 48 1248 23 HOH HOH . 
K 6 HOH A 49 1249 226 HOH HOH . 
K 6 HOH A 50 1250 223 HOH HOH . 
K 6 HOH A 51 1251 168 HOH HOH . 
K 6 HOH A 52 1252 70 HOH HOH . 
K 6 HOH A 53 1253 17 HOH HOH . 
K 6 HOH A 54 1254 9 HOH HOH . 
K 6 HOH A 55 1255 29 HOH HOH . 
K 6 HOH A 56 1256 38 HOH HOH . 
K 6 HOH A 57 1257 77 HOH HOH . 
K 6 HOH A 58 1258 16 HOH HOH . 
K 6 HOH A 59 1259 78 HOH HOH . 
K 6 HOH A 60 1260 128 HOH HOH . 
K 6 HOH A 61 1261 7 HOH HOH . 
K 6 HOH A 62 1262 155 HOH HOH . 
K 6 HOH A 63 1263 65 HOH HOH . 
K 6 HOH A 64 1264 94 HOH HOH . 
K 6 HOH A 65 1265 244 HOH HOH . 
K 6 HOH A 66 1266 21 HOH HOH . 
K 6 HOH A 67 1267 212 HOH HOH . 
K 6 HOH A 68 1268 74 HOH HOH . 
K 6 HOH A 69 1269 43 HOH HOH . 
K 6 HOH A 70 1270 227 HOH HOH . 
K 6 HOH A 71 1271 118 HOH HOH . 
K 6 HOH A 72 1272 234 HOH HOH . 
K 6 HOH A 73 1273 214 HOH HOH . 
K 6 HOH A 74 1274 88 HOH HOH . 
K 6 HOH A 75 1275 240 HOH HOH . 
K 6 HOH A 76 1276 18 HOH HOH . 
K 6 HOH A 77 1277 174 HOH HOH . 
K 6 HOH A 78 1278 237 HOH HOH . 
K 6 HOH A 79 1279 32 HOH HOH . 
K 6 HOH A 80 1280 229 HOH HOH . 
K 6 HOH A 81 1281 98 HOH HOH . 
K 6 HOH A 82 1282 6 HOH HOH . 
K 6 HOH A 83 1283 173 HOH HOH . 
K 6 HOH A 84 1284 102 HOH HOH . 
K 6 HOH A 85 1285 56 HOH HOH . 
K 6 HOH A 86 1286 108 HOH HOH . 
K 6 HOH A 87 1287 216 HOH HOH . 
K 6 HOH A 88 1288 194 HOH HOH . 
K 6 HOH A 89 1289 120 HOH HOH . 
K 6 HOH A 90 1290 225 HOH HOH . 
K 6 HOH A 91 1291 206 HOH HOH . 
K 6 HOH A 92 1292 220 HOH HOH . 
K 6 HOH A 93 1293 145 HOH HOH . 
K 6 HOH A 94 1294 34 HOH HOH . 
K 6 HOH A 95 1295 172 HOH HOH . 
K 6 HOH A 96 1296 3 HOH HOH . 
K 6 HOH A 97 1297 1 HOH HOH . 
K 6 HOH A 98 1298 20 HOH HOH . 
K 6 HOH A 99 1299 106 HOH HOH . 
K 6 HOH A 100 1300 2 HOH HOH . 
K 6 HOH A 101 1301 68 HOH HOH . 
K 6 HOH A 102 1302 203 HOH HOH . 
K 6 HOH A 103 1303 89 HOH HOH . 
K 6 HOH A 104 1304 180 HOH HOH . 
K 6 HOH A 105 1305 41 HOH HOH . 
K 6 HOH A 106 1306 193 HOH HOH . 
K 6 HOH A 107 1307 63 HOH HOH . 
K 6 HOH A 108 1308 42 HOH HOH . 
K 6 HOH A 109 1309 40 HOH HOH . 
K 6 HOH A 110 1310 51 HOH HOH . 
K 6 HOH A 111 1311 160 HOH HOH . 
K 6 HOH A 112 1312 19 HOH HOH . 
K 6 HOH A 113 1313 122 HOH HOH . 
K 6 HOH A 114 1314 44 HOH HOH . 
K 6 HOH A 115 1315 178 HOH HOH . 
K 6 HOH A 116 1316 169 HOH HOH . 
K 6 HOH A 117 1317 54 HOH HOH . 
K 6 HOH A 118 1318 136 HOH HOH . 
K 6 HOH A 119 1319 177 HOH HOH . 
K 6 HOH A 120 1320 190 HOH HOH . 
K 6 HOH A 121 1321 46 HOH HOH . 
K 6 HOH A 122 1322 93 HOH HOH . 
K 6 HOH A 123 1323 5 HOH HOH . 
K 6 HOH A 124 1324 129 HOH HOH . 
K 6 HOH A 125 1325 149 HOH HOH . 
K 6 HOH A 126 1326 84 HOH HOH . 
K 6 HOH A 127 1327 86 HOH HOH . 
K 6 HOH A 128 1328 115 HOH HOH . 
K 6 HOH A 129 1329 218 HOH HOH . 
K 6 HOH A 130 1330 13 HOH HOH . 
K 6 HOH A 131 1331 139 HOH HOH . 
K 6 HOH A 132 1332 50 HOH HOH . 
K 6 HOH A 133 1333 159 HOH HOH . 
K 6 HOH A 134 1334 55 HOH HOH . 
K 6 HOH A 135 1335 8 HOH HOH . 
K 6 HOH A 136 1336 215 HOH HOH . 
K 6 HOH A 137 1337 191 HOH HOH . 
K 6 HOH A 138 1338 233 HOH HOH . 
K 6 HOH A 139 1339 111 HOH HOH . 
K 6 HOH A 140 1340 67 HOH HOH . 
K 6 HOH A 141 1341 64 HOH HOH . 
K 6 HOH A 142 1342 186 HOH HOH . 
K 6 HOH A 143 1343 156 HOH HOH . 
K 6 HOH A 144 1344 121 HOH HOH . 
K 6 HOH A 145 1345 61 HOH HOH . 
K 6 HOH A 146 1346 147 HOH HOH . 
K 6 HOH A 147 1347 33 HOH HOH . 
K 6 HOH A 148 1348 131 HOH HOH . 
K 6 HOH A 149 1349 52 HOH HOH . 
K 6 HOH A 150 1350 76 HOH HOH . 
K 6 HOH A 151 1351 137 HOH HOH . 
K 6 HOH A 152 1352 30 HOH HOH . 
K 6 HOH A 153 1353 22 HOH HOH . 
K 6 HOH A 154 1354 60 HOH HOH . 
K 6 HOH A 155 1355 12 HOH HOH . 
K 6 HOH A 156 1356 92 HOH HOH . 
K 6 HOH A 157 1357 124 HOH HOH . 
K 6 HOH A 158 1358 66 HOH HOH . 
K 6 HOH A 159 1359 104 HOH HOH . 
K 6 HOH A 160 1360 39 HOH HOH . 
K 6 HOH A 161 1361 14 HOH HOH . 
K 6 HOH A 162 1362 130 HOH HOH . 
K 6 HOH A 163 1363 189 HOH HOH . 
K 6 HOH A 164 1364 36 HOH HOH . 
K 6 HOH A 165 1365 105 HOH HOH . 
K 6 HOH A 166 1366 82 HOH HOH . 
K 6 HOH A 167 1367 112 HOH HOH . 
K 6 HOH A 168 1368 27 HOH HOH . 
K 6 HOH A 169 1369 179 HOH HOH . 
K 6 HOH A 170 1370 25 HOH HOH . 
K 6 HOH A 171 1371 26 HOH HOH . 
K 6 HOH A 172 1372 192 HOH HOH . 
K 6 HOH A 173 1373 35 HOH HOH . 
K 6 HOH A 174 1374 196 HOH HOH . 
K 6 HOH A 175 1375 127 HOH HOH . 
K 6 HOH A 176 1376 167 HOH HOH . 
K 6 HOH A 177 1377 62 HOH HOH . 
K 6 HOH A 178 1378 107 HOH HOH . 
K 6 HOH A 179 1379 37 HOH HOH . 
K 6 HOH A 180 1380 171 HOH HOH . 
K 6 HOH A 181 1381 57 HOH HOH . 
K 6 HOH A 182 1382 211 HOH HOH . 
K 6 HOH A 183 1383 48 HOH HOH . 
K 6 HOH A 184 1384 222 HOH HOH . 
K 6 HOH A 185 1385 221 HOH HOH . 
K 6 HOH A 186 1386 158 HOH HOH . 
K 6 HOH A 187 1387 184 HOH HOH . 
K 6 HOH A 188 1388 119 HOH HOH . 
K 6 HOH A 189 1389 152 HOH HOH . 
K 6 HOH A 190 1390 83 HOH HOH . 
K 6 HOH A 191 1391 72 HOH HOH . 
K 6 HOH A 192 1392 204 HOH HOH . 
K 6 HOH A 193 1393 198 HOH HOH . 
K 6 HOH A 194 1394 109 HOH HOH . 
K 6 HOH A 195 1395 146 HOH HOH . 
K 6 HOH A 196 1396 142 HOH HOH . 
K 6 HOH A 197 1397 208 HOH HOH . 
K 6 HOH A 198 1398 176 HOH HOH . 
K 6 HOH A 199 1399 235 HOH HOH . 
K 6 HOH A 200 1400 117 HOH HOH . 
K 6 HOH A 201 1401 164 HOH HOH . 
K 6 HOH A 202 1402 187 HOH HOH . 
K 6 HOH A 203 1403 90 HOH HOH . 
K 6 HOH A 204 1404 85 HOH HOH . 
K 6 HOH A 205 1405 148 HOH HOH . 
K 6 HOH A 206 1406 99 HOH HOH . 
K 6 HOH A 207 1407 202 HOH HOH . 
K 6 HOH A 208 1408 207 HOH HOH . 
K 6 HOH A 209 1409 247 HOH HOH . 
K 6 HOH A 210 1410 199 HOH HOH . 
K 6 HOH A 211 1411 232 HOH HOH . 
K 6 HOH A 212 1412 113 HOH HOH . 
K 6 HOH A 213 1413 95 HOH HOH . 
K 6 HOH A 214 1414 201 HOH HOH . 
K 6 HOH A 215 1415 151 HOH HOH . 
K 6 HOH A 216 1416 230 HOH HOH . 
K 6 HOH A 217 1417 210 HOH HOH . 
K 6 HOH A 218 1418 243 HOH HOH . 
K 6 HOH A 219 1419 246 HOH HOH . 
K 6 HOH A 220 1420 239 HOH HOH . 
K 6 HOH A 221 1421 110 HOH HOH . 
K 6 HOH A 222 1422 101 HOH HOH . 
K 6 HOH A 223 1423 116 HOH HOH . 
K 6 HOH A 224 1424 11 HOH HOH . 
K 6 HOH A 225 1425 153 HOH HOH . 
K 6 HOH A 226 1426 200 HOH HOH . 
K 6 HOH A 227 1427 126 HOH HOH . 
K 6 HOH A 228 1428 45 HOH HOH . 
K 6 HOH A 229 1429 69 HOH HOH . 
K 6 HOH A 230 1430 141 HOH HOH . 
K 6 HOH A 231 1431 162 HOH HOH . 
K 6 HOH A 232 1432 188 HOH HOH . 
K 6 HOH A 233 1433 71 HOH HOH . 
K 6 HOH A 234 1434 213 HOH HOH . 
K 6 HOH A 235 1435 231 HOH HOH . 
K 6 HOH A 236 1436 103 HOH HOH . 
K 6 HOH A 237 1437 134 HOH HOH . 
K 6 HOH A 238 1438 197 HOH HOH . 
K 6 HOH A 239 1439 166 HOH HOH . 
K 6 HOH A 240 1440 242 HOH HOH . 
K 6 HOH A 241 1441 238 HOH HOH . 
K 6 HOH A 242 1442 150 HOH HOH . 
K 6 HOH A 243 1443 87 HOH HOH . 
K 6 HOH A 244 1444 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 -2.499 -12.717 -32.833 1 36.1 ? C1 EDO 1106 A 1 
HETATM 2 O O1 EDO . . . G 3 -3.273 -13.482 -31.926 1 34.68 ? O1 EDO 1106 A 1 
HETATM 3 C C2 EDO . . . G 3 -1.175 -13.313 -33.133 1 35.57 ? C2 EDO 1106 A 1 
HETATM 4 O O2 EDO . . . G 3 -1.225 -14.702 -33.413 1 37.08 ? O2 EDO 1106 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#