data_8VBO
#
_model_server_result.job_id            cdJhTK5-B6htv2mSMSk0Rw 
_model_server_result.datetime_utc      '2024-11-28 09:24:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vbo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    8VBO 
#
_exptl.entry_id    8VBO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VBO 
_cell.length_a            70.107 
_cell.length_b            150.891 
_cell.length_c            51.318 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VBO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 138 L CYS 134 1_555 A SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 215 L CYS 211 1_555 B SG CYS 265 H CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 106 H CYS 103 1_555 B SG CYS 126 H CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 B SG CYS 116 H CYS 113 1_555 B SG CYS 130 H CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 B SG CYS 189 H CYS 186 1_555 B SG CYS 245 H CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8VBO 
_atom_sites.fract_transf_matrix[1][1]    0.014264 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019486 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL H 1 301 302 GOL GOL . 
D 3 GOL H 1 302 303 GOL GOL . 
E 4 SO4 H 1 303 1 SO4 SO4 . 
F 4 SO4 H 1 304 2 SO4 SO4 . 
G 4 SO4 H 1 305 3 SO4 SO4 . 
H 5 HOH L 1 301 32 HOH HOH . 
H 5 HOH L 2 302 25 HOH HOH . 
H 5 HOH L 3 303 4 HOH HOH . 
H 5 HOH L 4 304 2 HOH HOH . 
H 5 HOH L 5 305 5 HOH HOH . 
H 5 HOH L 6 306 21 HOH HOH . 
H 5 HOH L 7 307 8 HOH HOH . 
H 5 HOH L 8 308 39 HOH HOH . 
H 5 HOH L 9 309 28 HOH HOH . 
H 5 HOH L 10 310 30 HOH HOH . 
H 5 HOH L 11 311 12 HOH HOH . 
H 5 HOH L 12 312 15 HOH HOH . 
H 5 HOH L 13 313 6 HOH HOH . 
H 5 HOH L 14 314 17 HOH HOH . 
H 5 HOH L 15 315 13 HOH HOH . 
H 5 HOH L 16 316 1 HOH HOH . 
H 5 HOH L 17 317 7 HOH HOH . 
H 5 HOH L 18 318 3 HOH HOH . 
H 5 HOH L 19 319 19 HOH HOH . 
H 5 HOH L 20 320 24 HOH HOH . 
H 5 HOH L 21 321 18 HOH HOH . 
H 5 HOH L 22 322 22 HOH HOH . 
H 5 HOH L 23 323 47 HOH HOH . 
I 5 HOH H 1 401 31 HOH HOH . 
I 5 HOH H 2 402 35 HOH HOH . 
I 5 HOH H 3 403 38 HOH HOH . 
I 5 HOH H 4 404 41 HOH HOH . 
I 5 HOH H 5 405 51 HOH HOH . 
I 5 HOH H 6 406 36 HOH HOH . 
I 5 HOH H 7 407 9 HOH HOH . 
I 5 HOH H 8 408 29 HOH HOH . 
I 5 HOH H 9 409 14 HOH HOH . 
I 5 HOH H 10 410 23 HOH HOH . 
I 5 HOH H 11 411 10 HOH HOH . 
I 5 HOH H 12 412 11 HOH HOH . 
I 5 HOH H 13 413 16 HOH HOH . 
I 5 HOH H 14 414 27 HOH HOH . 
I 5 HOH H 15 415 20 HOH HOH . 
I 5 HOH H 16 416 26 HOH HOH . 
I 5 HOH H 17 417 49 HOH HOH . 
I 5 HOH H 18 418 43 HOH HOH . 
I 5 HOH H 19 419 40 HOH HOH . 
I 5 HOH H 20 420 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 8.482 37.375 -1.156 1 69.19 ? C1 GOL 302 H 1 
HETATM 2 O O1 GOL . . . D 3 9.767 37.519 -0.609 1 62.93 ? O1 GOL 302 H 1 
HETATM 3 C C2 GOL . . . D 3 7.928 38.792 -1.404 1 65.36 ? C2 GOL 302 H 1 
HETATM 4 O O2 GOL . . . D 3 7.891 39.534 -0.236 1 66.21 ? O2 GOL 302 H 1 
HETATM 5 C C3 GOL . . . D 3 8.856 39.405 -2.472 1 66.17 ? C3 GOL 302 H 1 
HETATM 6 O O3 GOL . . . D 3 8.354 40.681 -2.754 1 59.7 ? O3 GOL 302 H 1 
HETATM 7 H H11 GOL . . . D 3 7.879 36.894 -0.568 1 83.16 ? H11 GOL 302 H 1 
HETATM 8 H H12 GOL . . . D 3 8.487 36.882 -1.992 1 83.16 ? H12 GOL 302 H 1 
HETATM 9 H HO1 GOL . . . D 3 10.166 36.773 -0.719 1 75.65 ? HO1 GOL 302 H 1 
HETATM 10 H H2 GOL . . . D 3 7.015 38.756 -1.73 1 78.56 ? H2 GOL 302 H 1 
HETATM 11 H HO2 GOL . . . D 3 8.474 39.213 0.293 1 79.59 ? HO2 GOL 302 H 1 
HETATM 12 H H31 GOL . . . D 3 8.878 38.819 -3.245 1 79.53 ? H31 GOL 302 H 1 
HETATM 13 H H32 GOL . . . D 3 9.765 39.414 -2.132 1 79.53 ? H32 GOL 302 H 1 
HETATM 14 H HO3 GOL . . . D 3 8.933 41.074 -3.236 1 71.77 ? HO3 GOL 302 H 1 
#
_model_server_stats.io_time_ms              149 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#