data_8VBV
#
_model_server_result.job_id            oS4AqtHh5J2Z4NFhJhUF-g 
_model_server_result.datetime_utc      '2024-11-23 23:17:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    8VBV 
#
_exptl.entry_id    8VBV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              349.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.85 
_cell.angle_gamma         90 
_cell.entry_id            8VBV 
_cell.length_a            182.076 
_cell.length_b            72.531 
_cell.length_c            89.595 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 301 A SER 314 1_555 C C 63U . A 63U 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B OG SER 301 B SER 314 1_555 D C 63U . B 63U 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C16 H19 N3 O4 S' 
_chem_comp.formula_weight    349.405 
_chem_comp.id                63U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
SAA CB 63U sing 1 n n 
SAA CAF 63U sing 2 n n 
OAI CAH 63U doub 3 n n 
NAC CB 63U sing 4 n n 
NAC CAD 63U sing 5 n n 
CB CA 63U sing 6 n n 
CAH CAD 63U sing 7 n n 
CAH OAJ 63U sing 8 n n 
CAD CAE 63U doub 9 n n 
CAF CAE 63U sing 10 n n 
CA C 63U sing 11 n n 
CA N 63U sing 12 n n 
OAR CAO 63U doub 13 n n 
C O 63U doub 14 n n 
CAE CAG 63U sing 15 n n 
N CAO 63U sing 16 n n 
CAO CAP 63U sing 17 n n 
CAX CAW 63U doub 18 n y 
CAX CAQ 63U sing 19 n y 
CAW CAV 63U sing 20 n y 
CAP CAQ 63U sing 21 n n 
CAP NAS 63U sing 22 n n 
CAQ CAT 63U doub 23 n y 
CAV CAU 63U doub 24 n y 
CAT CAU 63U sing 25 n y 
OAJ H1 63U sing 26 n n 
NAC H3 63U sing 27 n n 
CAG H6 63U sing 28 n n 
CAG H7 63U sing 29 n n 
CAG H8 63U sing 30 n n 
CAF H9 63U sing 31 n n 
CAF H10 63U sing 32 n n 
CB H11 63U sing 33 n n 
CA H12 63U sing 34 n n 
C H13 63U sing 35 n n 
N H14 63U sing 36 n n 
CAP H15 63U sing 37 n n 
NAS H16 63U sing 38 n n 
NAS H17 63U sing 39 n n 
CAT H19 63U sing 40 n n 
CAU H20 63U sing 41 n n 
CAV H21 63U sing 42 n n 
CAW H22 63U sing 43 n n 
CAX H23 63U sing 44 n n 
#
_atom_sites.entry_id                     8VBV 
_atom_sites.fract_transf_matrix[1][1]    0.005492 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001354 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013787 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 63U A 1 801 801 63U 63U . 
D 2 63U B 1 801 801 63U 63U . 
E 3 HOH A 1 901 132 HOH HOH . 
E 3 HOH A 2 902 140 HOH HOH . 
E 3 HOH A 3 903 18 HOH HOH . 
E 3 HOH A 4 904 150 HOH HOH . 
E 3 HOH A 5 905 19 HOH HOH . 
E 3 HOH A 6 906 87 HOH HOH . 
E 3 HOH A 7 907 32 HOH HOH . 
E 3 HOH A 8 908 105 HOH HOH . 
E 3 HOH A 9 909 160 HOH HOH . 
E 3 HOH A 10 910 5 HOH HOH . 
E 3 HOH A 11 911 167 HOH HOH . 
E 3 HOH A 12 912 153 HOH HOH . 
E 3 HOH A 13 913 8 HOH HOH . 
E 3 HOH A 14 914 7 HOH HOH . 
E 3 HOH A 15 915 116 HOH HOH . 
E 3 HOH A 16 916 41 HOH HOH . 
E 3 HOH A 17 917 113 HOH HOH . 
E 3 HOH A 18 918 31 HOH HOH . 
E 3 HOH A 19 919 99 HOH HOH . 
E 3 HOH A 20 920 39 HOH HOH . 
E 3 HOH A 21 921 78 HOH HOH . 
E 3 HOH A 22 922 166 HOH HOH . 
E 3 HOH A 23 923 72 HOH HOH . 
E 3 HOH A 24 924 27 HOH HOH . 
E 3 HOH A 25 925 16 HOH HOH . 
E 3 HOH A 26 926 93 HOH HOH . 
E 3 HOH A 27 927 43 HOH HOH . 
E 3 HOH A 28 928 154 HOH HOH . 
E 3 HOH A 29 929 102 HOH HOH . 
E 3 HOH A 30 930 49 HOH HOH . 
E 3 HOH A 31 931 129 HOH HOH . 
E 3 HOH A 32 932 89 HOH HOH . 
E 3 HOH A 33 933 45 HOH HOH . 
E 3 HOH A 34 934 55 HOH HOH . 
E 3 HOH A 35 935 20 HOH HOH . 
E 3 HOH A 36 936 144 HOH HOH . 
E 3 HOH A 37 937 145 HOH HOH . 
E 3 HOH A 38 938 66 HOH HOH . 
E 3 HOH A 39 939 52 HOH HOH . 
E 3 HOH A 40 940 110 HOH HOH . 
E 3 HOH A 41 941 91 HOH HOH . 
E 3 HOH A 42 942 4 HOH HOH . 
E 3 HOH A 43 943 3 HOH HOH . 
E 3 HOH A 44 944 124 HOH HOH . 
E 3 HOH A 45 945 12 HOH HOH . 
E 3 HOH A 46 946 6 HOH HOH . 
E 3 HOH A 47 947 37 HOH HOH . 
E 3 HOH A 48 948 25 HOH HOH . 
E 3 HOH A 49 949 35 HOH HOH . 
E 3 HOH A 50 950 58 HOH HOH . 
E 3 HOH A 51 951 60 HOH HOH . 
E 3 HOH A 52 952 11 HOH HOH . 
E 3 HOH A 53 953 119 HOH HOH . 
E 3 HOH A 54 954 24 HOH HOH . 
E 3 HOH A 55 955 108 HOH HOH . 
E 3 HOH A 56 956 44 HOH HOH . 
E 3 HOH A 57 957 112 HOH HOH . 
E 3 HOH A 58 958 79 HOH HOH . 
E 3 HOH A 59 959 53 HOH HOH . 
E 3 HOH A 60 960 122 HOH HOH . 
E 3 HOH A 61 961 64 HOH HOH . 
E 3 HOH A 62 962 70 HOH HOH . 
E 3 HOH A 63 963 84 HOH HOH . 
E 3 HOH A 64 964 48 HOH HOH . 
E 3 HOH A 65 965 162 HOH HOH . 
E 3 HOH A 66 966 92 HOH HOH . 
E 3 HOH A 67 967 76 HOH HOH . 
E 3 HOH A 68 968 103 HOH HOH . 
E 3 HOH A 69 969 75 HOH HOH . 
E 3 HOH A 70 970 36 HOH HOH . 
E 3 HOH A 71 971 156 HOH HOH . 
E 3 HOH A 72 972 98 HOH HOH . 
E 3 HOH A 73 973 109 HOH HOH . 
E 3 HOH A 74 974 148 HOH HOH . 
E 3 HOH A 75 975 168 HOH HOH . 
E 3 HOH A 76 976 94 HOH HOH . 
E 3 HOH A 77 977 161 HOH HOH . 
E 3 HOH A 78 978 130 HOH HOH . 
E 3 HOH A 79 979 100 HOH HOH . 
E 3 HOH A 80 980 114 HOH HOH . 
E 3 HOH A 81 981 165 HOH HOH . 
E 3 HOH A 82 982 120 HOH HOH . 
E 3 HOH A 83 983 63 HOH HOH . 
E 3 HOH A 84 984 56 HOH HOH . 
E 3 HOH A 85 985 88 HOH HOH . 
E 3 HOH A 86 986 107 HOH HOH . 
E 3 HOH A 87 987 157 HOH HOH . 
E 3 HOH A 88 988 126 HOH HOH . 
E 3 HOH A 89 989 115 HOH HOH . 
E 3 HOH A 90 990 134 HOH HOH . 
E 3 HOH A 91 991 83 HOH HOH . 
E 3 HOH A 92 992 146 HOH HOH . 
E 3 HOH A 93 993 151 HOH HOH . 
F 3 HOH B 1 901 96 HOH HOH . 
F 3 HOH B 2 902 9 HOH HOH . 
F 3 HOH B 3 903 106 HOH HOH . 
F 3 HOH B 4 904 81 HOH HOH . 
F 3 HOH B 5 905 17 HOH HOH . 
F 3 HOH B 6 906 57 HOH HOH . 
F 3 HOH B 7 907 51 HOH HOH . 
F 3 HOH B 8 908 42 HOH HOH . 
F 3 HOH B 9 909 22 HOH HOH . 
F 3 HOH B 10 910 28 HOH HOH . 
F 3 HOH B 11 911 159 HOH HOH . 
F 3 HOH B 12 912 2 HOH HOH . 
F 3 HOH B 13 913 21 HOH HOH . 
F 3 HOH B 14 914 1 HOH HOH . 
F 3 HOH B 15 915 61 HOH HOH . 
F 3 HOH B 16 916 86 HOH HOH . 
F 3 HOH B 17 917 38 HOH HOH . 
F 3 HOH B 18 918 67 HOH HOH . 
F 3 HOH B 19 919 80 HOH HOH . 
F 3 HOH B 20 920 170 HOH HOH . 
F 3 HOH B 21 921 137 HOH HOH . 
F 3 HOH B 22 922 15 HOH HOH . 
F 3 HOH B 23 923 121 HOH HOH . 
F 3 HOH B 24 924 30 HOH HOH . 
F 3 HOH B 25 925 46 HOH HOH . 
F 3 HOH B 26 926 29 HOH HOH . 
F 3 HOH B 27 927 141 HOH HOH . 
F 3 HOH B 28 928 10 HOH HOH . 
F 3 HOH B 29 929 147 HOH HOH . 
F 3 HOH B 30 930 14 HOH HOH . 
F 3 HOH B 31 931 59 HOH HOH . 
F 3 HOH B 32 932 74 HOH HOH . 
F 3 HOH B 33 933 54 HOH HOH . 
F 3 HOH B 34 934 143 HOH HOH . 
F 3 HOH B 35 935 111 HOH HOH . 
F 3 HOH B 36 936 65 HOH HOH . 
F 3 HOH B 37 937 90 HOH HOH . 
F 3 HOH B 38 938 68 HOH HOH . 
F 3 HOH B 39 939 125 HOH HOH . 
F 3 HOH B 40 940 50 HOH HOH . 
F 3 HOH B 41 941 13 HOH HOH . 
F 3 HOH B 42 942 23 HOH HOH . 
F 3 HOH B 43 943 34 HOH HOH . 
F 3 HOH B 44 944 142 HOH HOH . 
F 3 HOH B 45 945 71 HOH HOH . 
F 3 HOH B 46 946 104 HOH HOH . 
F 3 HOH B 47 947 139 HOH HOH . 
F 3 HOH B 48 948 85 HOH HOH . 
F 3 HOH B 49 949 163 HOH HOH . 
F 3 HOH B 50 950 135 HOH HOH . 
F 3 HOH B 51 951 40 HOH HOH . 
F 3 HOH B 52 952 47 HOH HOH . 
F 3 HOH B 53 953 117 HOH HOH . 
F 3 HOH B 54 954 33 HOH HOH . 
F 3 HOH B 55 955 131 HOH HOH . 
F 3 HOH B 56 956 101 HOH HOH . 
F 3 HOH B 57 957 95 HOH HOH . 
F 3 HOH B 58 958 138 HOH HOH . 
F 3 HOH B 59 959 123 HOH HOH . 
F 3 HOH B 60 960 136 HOH HOH . 
F 3 HOH B 61 961 73 HOH HOH . 
F 3 HOH B 62 962 118 HOH HOH . 
F 3 HOH B 63 963 77 HOH HOH . 
F 3 HOH B 64 964 128 HOH HOH . 
F 3 HOH B 65 965 26 HOH HOH . 
F 3 HOH B 66 966 97 HOH HOH . 
F 3 HOH B 67 967 62 HOH HOH . 
F 3 HOH B 68 968 69 HOH HOH . 
F 3 HOH B 69 969 127 HOH HOH . 
F 3 HOH B 70 970 171 HOH HOH . 
F 3 HOH B 71 971 133 HOH HOH . 
F 3 HOH B 72 972 82 HOH HOH . 
F 3 HOH B 73 973 155 HOH HOH . 
F 3 HOH B 74 974 158 HOH HOH . 
F 3 HOH B 75 975 152 HOH HOH . 
F 3 HOH B 76 976 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAI 63U . . . D 2 28.334 -57.635 -25.989 1 57.91 ? OAI 63U 801 B 1 
HETATM 2 C CAH 63U . . . D 2 29.222 -56.834 -25.742 1 56.72 ? CAH 63U 801 B 1 
HETATM 3 O OAJ 63U . . . D 2 29.87 -56.737 -24.707 1 55.24 ? OAJ 63U 801 B 1 
HETATM 4 C CAD 63U . . . D 2 29.484 -55.793 -26.824 1 56.48 ? CAD 63U 801 B 1 
HETATM 5 N NAC 63U . . . D 2 28.377 -55.174 -27.348 1 54.5 ? NAC 63U 801 B 1 
HETATM 6 C CAE 63U . . . D 2 30.725 -55.439 -27.239 1 57.43 ? CAE 63U 801 B 1 
HETATM 7 C CAG 63U . . . D 2 31.979 -55.95 -26.596 1 55.44 ? CAG 63U 801 B 1 
HETATM 8 C CAF 63U . . . D 2 31.036 -54.542 -28.408 1 56.51 ? CAF 63U 801 B 1 
HETATM 9 S SAA 63U . . . D 2 29.637 -54.217 -29.502 1 59.29 ? SAA 63U 801 B 1 
HETATM 10 C CB 63U . . . D 2 28.764 -53.906 -27.957 1 61.84 ? CB 63U 801 B 1 
HETATM 11 C CA 63U . . . D 2 27.715 -52.84 -27.934 1 57.7 ? CA 63U 801 B 1 
HETATM 12 C C 63U . . . D 2 26.632 -53.172 -26.899 1 57.72 ? C 63U 801 B 1 
HETATM 13 O O 63U . . . D 2 26.816 -52.891 -25.755 1 57.71 ? O 63U 801 B 1 
HETATM 14 N N 63U . . . D 2 28.422 -51.615 -27.6 1 54.42 ? N 63U 801 B 1 
HETATM 15 C CAO 63U . . . D 2 28.906 -50.8 -28.531 1 56.52 ? CAO 63U 801 B 1 
HETATM 16 O OAR 63U . . . D 2 28.566 -50.867 -29.706 1 57.32 ? OAR 63U 801 B 1 
HETATM 17 C CAP 63U . . . D 2 30.007 -49.846 -28.078 1 57.36 ? CAP 63U 801 B 1 
HETATM 18 N NAS 63U . . . D 2 29.912 -48.561 -28.823 1 57.58 ? NAS 63U 801 B 1 
HETATM 19 C CAQ 63U . . . D 2 31.349 -50.53 -28.279 1 57.14 ? CAQ 63U 801 B 1 
HETATM 20 C CAT 63U . . . D 2 31.691 -51.087 -29.505 1 58.03 ? CAT 63U 801 B 1 
HETATM 21 C CAU 63U . . . D 2 32.914 -51.717 -29.688 1 56.07 ? CAU 63U 801 B 1 
HETATM 22 C CAV 63U . . . D 2 33.809 -51.801 -28.644 1 56.35 ? CAV 63U 801 B 1 
HETATM 23 C CAW 63U . . . D 2 33.486 -51.255 -27.422 1 56.25 ? CAW 63U 801 B 1 
HETATM 24 C CAX 63U . . . D 2 32.263 -50.624 -27.239 1 56.3 ? CAX 63U 801 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#