data_8VBV # _model_server_result.job_id AKjRpkeWs8_U6PXY0d4uNg _model_server_result.datetime_utc '2024-11-12 23:37:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 8VBV # _exptl.entry_id 8VBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.85 _cell.angle_gamma 90 _cell.entry_id 8VBV _cell.length_a 182.076 _cell.length_b 72.531 _cell.length_c 89.595 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 301 A SER 314 1_555 C C 63U . A 63U 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B OG SER 301 B SER 314 1_555 D C 63U . B 63U 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C16 H19 N3 O4 S' _chem_comp.formula_weight 349.405 _chem_comp.id 63U _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SAA CB 63U sing 1 n n SAA CAF 63U sing 2 n n OAI CAH 63U doub 3 n n NAC CB 63U sing 4 n n NAC CAD 63U sing 5 n n CB CA 63U sing 6 n n CAH CAD 63U sing 7 n n CAH OAJ 63U sing 8 n n CAD CAE 63U doub 9 n n CAF CAE 63U sing 10 n n CA C 63U sing 11 n n CA N 63U sing 12 n n OAR CAO 63U doub 13 n n C O 63U doub 14 n n CAE CAG 63U sing 15 n n N CAO 63U sing 16 n n CAO CAP 63U sing 17 n n CAX CAW 63U doub 18 n y CAX CAQ 63U sing 19 n y CAW CAV 63U sing 20 n y CAP CAQ 63U sing 21 n n CAP NAS 63U sing 22 n n CAQ CAT 63U doub 23 n y CAV CAU 63U doub 24 n y CAT CAU 63U sing 25 n y OAJ H1 63U sing 26 n n NAC H3 63U sing 27 n n CAG H6 63U sing 28 n n CAG H7 63U sing 29 n n CAG H8 63U sing 30 n n CAF H9 63U sing 31 n n CAF H10 63U sing 32 n n CB H11 63U sing 33 n n CA H12 63U sing 34 n n C H13 63U sing 35 n n N H14 63U sing 36 n n CAP H15 63U sing 37 n n NAS H16 63U sing 38 n n NAS H17 63U sing 39 n n CAT H19 63U sing 40 n n CAU H20 63U sing 41 n n CAV H21 63U sing 42 n n CAW H22 63U sing 43 n n CAX H23 63U sing 44 n n # _atom_sites.entry_id 8VBV _atom_sites.fract_transf_matrix[1][1] 0.005492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001354 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 63U A 1 801 801 63U 63U . D 2 63U B 1 801 801 63U 63U . E 3 HOH A 1 901 132 HOH HOH . E 3 HOH A 2 902 140 HOH HOH . E 3 HOH A 3 903 18 HOH HOH . E 3 HOH A 4 904 150 HOH HOH . E 3 HOH A 5 905 19 HOH HOH . E 3 HOH A 6 906 87 HOH HOH . E 3 HOH A 7 907 32 HOH HOH . E 3 HOH A 8 908 105 HOH HOH . E 3 HOH A 9 909 160 HOH HOH . E 3 HOH A 10 910 5 HOH HOH . E 3 HOH A 11 911 167 HOH HOH . E 3 HOH A 12 912 153 HOH HOH . E 3 HOH A 13 913 8 HOH HOH . E 3 HOH A 14 914 7 HOH HOH . E 3 HOH A 15 915 116 HOH HOH . E 3 HOH A 16 916 41 HOH HOH . E 3 HOH A 17 917 113 HOH HOH . E 3 HOH A 18 918 31 HOH HOH . E 3 HOH A 19 919 99 HOH HOH . E 3 HOH A 20 920 39 HOH HOH . E 3 HOH A 21 921 78 HOH HOH . E 3 HOH A 22 922 166 HOH HOH . E 3 HOH A 23 923 72 HOH HOH . E 3 HOH A 24 924 27 HOH HOH . E 3 HOH A 25 925 16 HOH HOH . E 3 HOH A 26 926 93 HOH HOH . E 3 HOH A 27 927 43 HOH HOH . E 3 HOH A 28 928 154 HOH HOH . E 3 HOH A 29 929 102 HOH HOH . E 3 HOH A 30 930 49 HOH HOH . E 3 HOH A 31 931 129 HOH HOH . E 3 HOH A 32 932 89 HOH HOH . E 3 HOH A 33 933 45 HOH HOH . E 3 HOH A 34 934 55 HOH HOH . E 3 HOH A 35 935 20 HOH HOH . E 3 HOH A 36 936 144 HOH HOH . E 3 HOH A 37 937 145 HOH HOH . E 3 HOH A 38 938 66 HOH HOH . E 3 HOH A 39 939 52 HOH HOH . E 3 HOH A 40 940 110 HOH HOH . E 3 HOH A 41 941 91 HOH HOH . E 3 HOH A 42 942 4 HOH HOH . E 3 HOH A 43 943 3 HOH HOH . E 3 HOH A 44 944 124 HOH HOH . E 3 HOH A 45 945 12 HOH HOH . E 3 HOH A 46 946 6 HOH HOH . E 3 HOH A 47 947 37 HOH HOH . E 3 HOH A 48 948 25 HOH HOH . E 3 HOH A 49 949 35 HOH HOH . E 3 HOH A 50 950 58 HOH HOH . E 3 HOH A 51 951 60 HOH HOH . E 3 HOH A 52 952 11 HOH HOH . E 3 HOH A 53 953 119 HOH HOH . E 3 HOH A 54 954 24 HOH HOH . E 3 HOH A 55 955 108 HOH HOH . E 3 HOH A 56 956 44 HOH HOH . E 3 HOH A 57 957 112 HOH HOH . E 3 HOH A 58 958 79 HOH HOH . E 3 HOH A 59 959 53 HOH HOH . E 3 HOH A 60 960 122 HOH HOH . E 3 HOH A 61 961 64 HOH HOH . E 3 HOH A 62 962 70 HOH HOH . E 3 HOH A 63 963 84 HOH HOH . E 3 HOH A 64 964 48 HOH HOH . E 3 HOH A 65 965 162 HOH HOH . E 3 HOH A 66 966 92 HOH HOH . E 3 HOH A 67 967 76 HOH HOH . E 3 HOH A 68 968 103 HOH HOH . E 3 HOH A 69 969 75 HOH HOH . E 3 HOH A 70 970 36 HOH HOH . E 3 HOH A 71 971 156 HOH HOH . E 3 HOH A 72 972 98 HOH HOH . E 3 HOH A 73 973 109 HOH HOH . E 3 HOH A 74 974 148 HOH HOH . E 3 HOH A 75 975 168 HOH HOH . E 3 HOH A 76 976 94 HOH HOH . E 3 HOH A 77 977 161 HOH HOH . E 3 HOH A 78 978 130 HOH HOH . E 3 HOH A 79 979 100 HOH HOH . E 3 HOH A 80 980 114 HOH HOH . E 3 HOH A 81 981 165 HOH HOH . E 3 HOH A 82 982 120 HOH HOH . E 3 HOH A 83 983 63 HOH HOH . E 3 HOH A 84 984 56 HOH HOH . E 3 HOH A 85 985 88 HOH HOH . E 3 HOH A 86 986 107 HOH HOH . E 3 HOH A 87 987 157 HOH HOH . E 3 HOH A 88 988 126 HOH HOH . E 3 HOH A 89 989 115 HOH HOH . E 3 HOH A 90 990 134 HOH HOH . E 3 HOH A 91 991 83 HOH HOH . E 3 HOH A 92 992 146 HOH HOH . E 3 HOH A 93 993 151 HOH HOH . F 3 HOH B 1 901 96 HOH HOH . F 3 HOH B 2 902 9 HOH HOH . F 3 HOH B 3 903 106 HOH HOH . F 3 HOH B 4 904 81 HOH HOH . F 3 HOH B 5 905 17 HOH HOH . F 3 HOH B 6 906 57 HOH HOH . F 3 HOH B 7 907 51 HOH HOH . F 3 HOH B 8 908 42 HOH HOH . F 3 HOH B 9 909 22 HOH HOH . F 3 HOH B 10 910 28 HOH HOH . F 3 HOH B 11 911 159 HOH HOH . F 3 HOH B 12 912 2 HOH HOH . F 3 HOH B 13 913 21 HOH HOH . F 3 HOH B 14 914 1 HOH HOH . F 3 HOH B 15 915 61 HOH HOH . F 3 HOH B 16 916 86 HOH HOH . F 3 HOH B 17 917 38 HOH HOH . F 3 HOH B 18 918 67 HOH HOH . F 3 HOH B 19 919 80 HOH HOH . F 3 HOH B 20 920 170 HOH HOH . F 3 HOH B 21 921 137 HOH HOH . F 3 HOH B 22 922 15 HOH HOH . F 3 HOH B 23 923 121 HOH HOH . F 3 HOH B 24 924 30 HOH HOH . F 3 HOH B 25 925 46 HOH HOH . F 3 HOH B 26 926 29 HOH HOH . F 3 HOH B 27 927 141 HOH HOH . F 3 HOH B 28 928 10 HOH HOH . F 3 HOH B 29 929 147 HOH HOH . F 3 HOH B 30 930 14 HOH HOH . F 3 HOH B 31 931 59 HOH HOH . F 3 HOH B 32 932 74 HOH HOH . F 3 HOH B 33 933 54 HOH HOH . F 3 HOH B 34 934 143 HOH HOH . F 3 HOH B 35 935 111 HOH HOH . F 3 HOH B 36 936 65 HOH HOH . F 3 HOH B 37 937 90 HOH HOH . F 3 HOH B 38 938 68 HOH HOH . F 3 HOH B 39 939 125 HOH HOH . F 3 HOH B 40 940 50 HOH HOH . F 3 HOH B 41 941 13 HOH HOH . F 3 HOH B 42 942 23 HOH HOH . F 3 HOH B 43 943 34 HOH HOH . F 3 HOH B 44 944 142 HOH HOH . F 3 HOH B 45 945 71 HOH HOH . F 3 HOH B 46 946 104 HOH HOH . F 3 HOH B 47 947 139 HOH HOH . F 3 HOH B 48 948 85 HOH HOH . F 3 HOH B 49 949 163 HOH HOH . F 3 HOH B 50 950 135 HOH HOH . F 3 HOH B 51 951 40 HOH HOH . F 3 HOH B 52 952 47 HOH HOH . F 3 HOH B 53 953 117 HOH HOH . F 3 HOH B 54 954 33 HOH HOH . F 3 HOH B 55 955 131 HOH HOH . F 3 HOH B 56 956 101 HOH HOH . F 3 HOH B 57 957 95 HOH HOH . F 3 HOH B 58 958 138 HOH HOH . F 3 HOH B 59 959 123 HOH HOH . F 3 HOH B 60 960 136 HOH HOH . F 3 HOH B 61 961 73 HOH HOH . F 3 HOH B 62 962 118 HOH HOH . F 3 HOH B 63 963 77 HOH HOH . F 3 HOH B 64 964 128 HOH HOH . F 3 HOH B 65 965 26 HOH HOH . F 3 HOH B 66 966 97 HOH HOH . F 3 HOH B 67 967 62 HOH HOH . F 3 HOH B 68 968 69 HOH HOH . F 3 HOH B 69 969 127 HOH HOH . F 3 HOH B 70 970 171 HOH HOH . F 3 HOH B 71 971 133 HOH HOH . F 3 HOH B 72 972 82 HOH HOH . F 3 HOH B 73 973 155 HOH HOH . F 3 HOH B 74 974 158 HOH HOH . F 3 HOH B 75 975 152 HOH HOH . F 3 HOH B 76 976 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAI 63U . . . D 2 28.334 -57.635 -25.989 1 57.91 ? OAI 63U 801 B 1 HETATM 2 C CAH 63U . . . D 2 29.222 -56.834 -25.742 1 56.72 ? CAH 63U 801 B 1 HETATM 3 O OAJ 63U . . . D 2 29.87 -56.737 -24.707 1 55.24 ? OAJ 63U 801 B 1 HETATM 4 C CAD 63U . . . D 2 29.484 -55.793 -26.824 1 56.48 ? CAD 63U 801 B 1 HETATM 5 N NAC 63U . . . D 2 28.377 -55.174 -27.348 1 54.5 ? NAC 63U 801 B 1 HETATM 6 C CAE 63U . . . D 2 30.725 -55.439 -27.239 1 57.43 ? CAE 63U 801 B 1 HETATM 7 C CAG 63U . . . D 2 31.979 -55.95 -26.596 1 55.44 ? CAG 63U 801 B 1 HETATM 8 C CAF 63U . . . D 2 31.036 -54.542 -28.408 1 56.51 ? CAF 63U 801 B 1 HETATM 9 S SAA 63U . . . D 2 29.637 -54.217 -29.502 1 59.29 ? SAA 63U 801 B 1 HETATM 10 C CB 63U . . . D 2 28.764 -53.906 -27.957 1 61.84 ? CB 63U 801 B 1 HETATM 11 C CA 63U . . . D 2 27.715 -52.84 -27.934 1 57.7 ? CA 63U 801 B 1 HETATM 12 C C 63U . . . D 2 26.632 -53.172 -26.899 1 57.72 ? C 63U 801 B 1 HETATM 13 O O 63U . . . D 2 26.816 -52.891 -25.755 1 57.71 ? O 63U 801 B 1 HETATM 14 N N 63U . . . D 2 28.422 -51.615 -27.6 1 54.42 ? N 63U 801 B 1 HETATM 15 C CAO 63U . . . D 2 28.906 -50.8 -28.531 1 56.52 ? CAO 63U 801 B 1 HETATM 16 O OAR 63U . . . D 2 28.566 -50.867 -29.706 1 57.32 ? OAR 63U 801 B 1 HETATM 17 C CAP 63U . . . D 2 30.007 -49.846 -28.078 1 57.36 ? CAP 63U 801 B 1 HETATM 18 N NAS 63U . . . D 2 29.912 -48.561 -28.823 1 57.58 ? NAS 63U 801 B 1 HETATM 19 C CAQ 63U . . . D 2 31.349 -50.53 -28.279 1 57.14 ? CAQ 63U 801 B 1 HETATM 20 C CAT 63U . . . D 2 31.691 -51.087 -29.505 1 58.03 ? CAT 63U 801 B 1 HETATM 21 C CAU 63U . . . D 2 32.914 -51.717 -29.688 1 56.07 ? CAU 63U 801 B 1 HETATM 22 C CAV 63U . . . D 2 33.809 -51.801 -28.644 1 56.35 ? CAV 63U 801 B 1 HETATM 23 C CAW 63U . . . D 2 33.486 -51.255 -27.422 1 56.25 ? CAW 63U 801 B 1 HETATM 24 C CAX 63U . . . D 2 32.263 -50.624 -27.239 1 56.3 ? CAX 63U 801 B 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #