data_8VBY # _model_server_result.job_id VcQrRPMj4y6OX3It-Jh-tg _model_server_result.datetime_utc '2024-11-22 05:53:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":715}' # _entry.id 8VBY # _exptl.entry_id 8VBY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 100.202 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEPTANE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VBY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 M N N ? 8 P N N ? 8 T N N ? 8 U N N ? 8 BA N N ? 8 FA N N ? 8 HA N N ? 8 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 180 1_555 A SG CYS 139 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 138 A ASN 188 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A O VAL 28 A VAL 78 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OD1 ASP 141 A ASP 191 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A OD2 ASP 141 A ASP 191 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc4 A NE2 HIS 143 A HIS 193 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A NE2 HIS 325 A HIS 375 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 A OE2 GLU 346 A GLU 396 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 A O LEU 368 A LEU 418 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 A OD1 ASP 371 A ASP 421 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 A OG SER 372 A SER 422 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C7 H16' _chem_comp.formula_weight 100.202 _chem_comp.id HP6 _chem_comp.mon_nstd_flag . _chem_comp.name HEPTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 HP6 sing 315 n n C20 H201 HP6 sing 316 n n C20 H202 HP6 sing 317 n n C20 H203 HP6 sing 318 n n C21 C22 HP6 sing 319 n n C21 H211 HP6 sing 320 n n C21 H212 HP6 sing 321 n n C22 C23 HP6 sing 322 n n C22 H221 HP6 sing 323 n n C22 H222 HP6 sing 324 n n C23 C24 HP6 sing 325 n n C23 H231 HP6 sing 326 n n C23 H232 HP6 sing 327 n n C24 C25 HP6 sing 328 n n C24 H241 HP6 sing 329 n n C24 H242 HP6 sing 330 n n C25 C26 HP6 sing 331 n n C25 H251 HP6 sing 332 n n C25 H252 HP6 sing 333 n n C26 H261 HP6 sing 334 n n C26 H262 HP6 sing 335 n n C26 H263 HP6 sing 336 n n # _atom_sites.entry_id 8VBY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 42L A 1 701 701 42L 42L . C 3 A1AAF A 1 702 702 A1AAF MRS . D 4 NAG A 1 703 705 NAG NAG . E 5 Y01 A 1 704 709 Y01 Y01 . F 6 D10 A 1 705 713 D10 D10 . G 7 LNK A 1 706 714 LNK LNK . H 6 D10 A 1 707 715 D10 D10 . I 7 LNK A 1 708 717 LNK LNK . J 7 LNK A 1 709 718 LNK LNK . K 5 Y01 A 1 710 723 Y01 Y01 . L 5 Y01 A 1 711 727 Y01 Y01 . M 8 HP6 A 1 712 728 HP6 HP6 . N 9 ZN A 1 713 729 ZN ZN . O 10 NA A 1 714 730 NA NA . P 8 HP6 A 1 715 732 HP6 HP6 . Q 11 D12 A 1 716 734 D12 D12 . R 11 D12 A 1 717 736 D12 D12 . S 6 D10 A 1 718 738 D10 D10 . T 8 HP6 A 1 719 748 HP6 HP6 . U 8 HP6 A 1 720 749 HP6 HP6 . V 7 LNK A 1 721 750 LNK LNK . W 7 LNK A 1 722 751 LNK LNK . X 7 LNK A 1 723 752 LNK LNK . Y 6 D10 A 1 724 753 D10 D10 . Z 12 MYS A 1 725 754 MYS MYS . AA 11 D12 A 1 726 755 D12 D12 . BA 8 HP6 A 1 727 756 HP6 HP6 . CA 11 D12 A 1 728 758 D12 D12 . DA 13 OCT A 1 729 759 OCT OCT . EA 13 OCT A 1 730 762 OCT OCT . FA 8 HP6 A 1 731 763 HP6 HP6 . GA 7 LNK A 1 732 764 LNK LNK . HA 8 HP6 A 1 733 765 HP6 HP6 . IA 6 D10 A 1 734 766 D10 D10 . JA 6 D10 A 1 735 770 D10 D10 . KA 11 D12 A 1 736 772 D12 D12 . LA 8 HP6 A 1 737 774 HP6 HP6 . MA 5 Y01 A 1 738 776 Y01 Y01 . NA 11 D12 A 1 739 777 D12 D12 . OA 6 D10 A 1 740 778 D10 D10 . PA 6 D10 A 1 741 1 D10 D10 . QA 14 HOH A 1 801 12 HOH HOH . QA 14 HOH A 2 802 11 HOH HOH . QA 14 HOH A 3 803 7 HOH HOH . QA 14 HOH A 4 804 8 HOH HOH . QA 14 HOH A 5 805 3 HOH HOH . QA 14 HOH A 6 806 4 HOH HOH . QA 14 HOH A 7 807 10 HOH HOH . QA 14 HOH A 8 808 9 HOH HOH . QA 14 HOH A 9 809 6 HOH HOH . QA 14 HOH A 10 810 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 HP6 . . . P 8 151.307 163.462 128.511 1 51.19 ? C20 HP6 715 A 1 HETATM 2 C C21 HP6 . . . P 8 151.494 164.951 128.25 1 51.62 ? C21 HP6 715 A 1 HETATM 3 C C22 HP6 . . . P 8 152.958 165.371 128.226 1 52.2 ? C22 HP6 715 A 1 HETATM 4 C C23 HP6 . . . P 8 153.157 166.828 127.824 1 53.57 ? C23 HP6 715 A 1 HETATM 5 C C24 HP6 . . . P 8 154.552 167.356 128.135 1 55.13 ? C24 HP6 715 A 1 HETATM 6 C C25 HP6 . . . P 8 154.724 168.836 127.813 1 52.24 ? C25 HP6 715 A 1 HETATM 7 C C26 HP6 . . . P 8 156.059 169.39 128.29 1 48.68 ? C26 HP6 715 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #