data_8VBY # _model_server_result.job_id EJ-3UIcSmf1rXmDsqqElog _model_server_result.datetime_utc '2024-11-14 18:09:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":725}' # _entry.id 8VBY # _exptl.entry_id 8VBY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 212.415 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VBY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 180 1_555 A SG CYS 139 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 138 A ASN 188 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A O VAL 28 A VAL 78 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OD1 ASP 141 A ASP 191 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A OD2 ASP 141 A ASP 191 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc4 A NE2 HIS 143 A HIS 193 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A NE2 HIS 325 A HIS 375 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 A OE2 GLU 346 A GLU 396 1_555 N ZN ZN . A ZN 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 A O LEU 368 A LEU 418 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 A OD1 ASP 371 A ASP 421 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 A OG SER 372 A SER 422 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYS sing 438 n n C1 H11 MYS sing 439 n n C1 H12 MYS sing 440 n n C1 H13 MYS sing 441 n n C2 C3 MYS sing 442 n n C2 H21 MYS sing 443 n n C2 H22 MYS sing 444 n n C3 C4 MYS sing 445 n n C3 H31 MYS sing 446 n n C3 H32 MYS sing 447 n n C4 C5 MYS sing 448 n n C4 H41 MYS sing 449 n n C4 H42 MYS sing 450 n n C5 C6 MYS sing 451 n n C5 H51 MYS sing 452 n n C5 H52 MYS sing 453 n n C6 C7 MYS sing 454 n n C6 H61 MYS sing 455 n n C6 H62 MYS sing 456 n n C7 C8 MYS sing 457 n n C7 H71 MYS sing 458 n n C7 H72 MYS sing 459 n n C8 C9 MYS sing 460 n n C8 H81 MYS sing 461 n n C8 H82 MYS sing 462 n n C9 C10 MYS sing 463 n n C9 H91 MYS sing 464 n n C9 H92 MYS sing 465 n n C10 C11 MYS sing 466 n n C10 H101 MYS sing 467 n n C10 H102 MYS sing 468 n n C11 C12 MYS sing 469 n n C11 H111 MYS sing 470 n n C11 H112 MYS sing 471 n n C12 C13 MYS sing 472 n n C12 H121 MYS sing 473 n n C12 H122 MYS sing 474 n n C13 C14 MYS sing 475 n n C13 H131 MYS sing 476 n n C13 H132 MYS sing 477 n n C14 C15 MYS sing 478 n n C14 H141 MYS sing 479 n n C14 H142 MYS sing 480 n n C15 H151 MYS sing 481 n n C15 H152 MYS sing 482 n n C15 H153 MYS sing 483 n n # _atom_sites.entry_id 8VBY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 42L A 1 701 701 42L 42L . C 3 A1AAF A 1 702 702 A1AAF MRS . D 4 NAG A 1 703 705 NAG NAG . E 5 Y01 A 1 704 709 Y01 Y01 . F 6 D10 A 1 705 713 D10 D10 . G 7 LNK A 1 706 714 LNK LNK . H 6 D10 A 1 707 715 D10 D10 . I 7 LNK A 1 708 717 LNK LNK . J 7 LNK A 1 709 718 LNK LNK . K 5 Y01 A 1 710 723 Y01 Y01 . L 5 Y01 A 1 711 727 Y01 Y01 . M 8 HP6 A 1 712 728 HP6 HP6 . N 9 ZN A 1 713 729 ZN ZN . O 10 NA A 1 714 730 NA NA . P 8 HP6 A 1 715 732 HP6 HP6 . Q 11 D12 A 1 716 734 D12 D12 . R 11 D12 A 1 717 736 D12 D12 . S 6 D10 A 1 718 738 D10 D10 . T 8 HP6 A 1 719 748 HP6 HP6 . U 8 HP6 A 1 720 749 HP6 HP6 . V 7 LNK A 1 721 750 LNK LNK . W 7 LNK A 1 722 751 LNK LNK . X 7 LNK A 1 723 752 LNK LNK . Y 6 D10 A 1 724 753 D10 D10 . Z 12 MYS A 1 725 754 MYS MYS . AA 11 D12 A 1 726 755 D12 D12 . BA 8 HP6 A 1 727 756 HP6 HP6 . CA 11 D12 A 1 728 758 D12 D12 . DA 13 OCT A 1 729 759 OCT OCT . EA 13 OCT A 1 730 762 OCT OCT . FA 8 HP6 A 1 731 763 HP6 HP6 . GA 7 LNK A 1 732 764 LNK LNK . HA 8 HP6 A 1 733 765 HP6 HP6 . IA 6 D10 A 1 734 766 D10 D10 . JA 6 D10 A 1 735 770 D10 D10 . KA 11 D12 A 1 736 772 D12 D12 . LA 8 HP6 A 1 737 774 HP6 HP6 . MA 5 Y01 A 1 738 776 Y01 Y01 . NA 11 D12 A 1 739 777 D12 D12 . OA 6 D10 A 1 740 778 D10 D10 . PA 6 D10 A 1 741 1 D10 D10 . QA 14 HOH A 1 801 12 HOH HOH . QA 14 HOH A 2 802 11 HOH HOH . QA 14 HOH A 3 803 7 HOH HOH . QA 14 HOH A 4 804 8 HOH HOH . QA 14 HOH A 5 805 3 HOH HOH . QA 14 HOH A 6 806 4 HOH HOH . QA 14 HOH A 7 807 10 HOH HOH . QA 14 HOH A 8 808 9 HOH HOH . QA 14 HOH A 9 809 6 HOH HOH . QA 14 HOH A 10 810 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYS . . . Z 12 141.733 127.902 158.516 1 34.69 ? C1 MYS 725 A 1 HETATM 2 C C2 MYS . . . Z 12 140.254 127.796 158.174 1 42.11 ? C2 MYS 725 A 1 HETATM 3 C C3 MYS . . . Z 12 139.364 128.539 159.163 1 41.65 ? C3 MYS 725 A 1 HETATM 4 C C4 MYS . . . Z 12 137.884 128.471 158.808 1 37.19 ? C4 MYS 725 A 1 HETATM 5 C C5 MYS . . . Z 12 136.987 129.201 159.798 1 36.02 ? C5 MYS 725 A 1 HETATM 6 C C6 MYS . . . Z 12 136.827 128.476 161.127 1 40.68 ? C6 MYS 725 A 1 HETATM 7 C C7 MYS . . . Z 12 135.407 128.539 161.675 1 39.62 ? C7 MYS 725 A 1 HETATM 8 C C8 MYS . . . Z 12 134.424 127.697 160.873 1 36.82 ? C8 MYS 725 A 1 HETATM 9 C C9 MYS . . . Z 12 132.977 127.832 161.331 1 35.58 ? C9 MYS 725 A 1 HETATM 10 C C10 MYS . . . Z 12 132.017 127.024 160.47 1 35.36 ? C10 MYS 725 A 1 HETATM 11 C C11 MYS . . . Z 12 130.552 127.384 160.673 1 34.34 ? C11 MYS 725 A 1 HETATM 12 C C12 MYS . . . Z 12 129.629 126.655 159.706 1 35.57 ? C12 MYS 725 A 1 HETATM 13 C C13 MYS . . . Z 12 128.191 127.153 159.746 1 38.55 ? C13 MYS 725 A 1 HETATM 14 C C14 MYS . . . Z 12 127.258 126.239 160.527 1 38.5 ? C14 MYS 725 A 1 HETATM 15 C C15 MYS . . . Z 12 127.21 124.827 159.96 1 37.32 ? C15 MYS 725 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 205 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #