data_8VC8 # _model_server_result.job_id a-G-3n8Y8Q1Lq42SEuLoFA _model_server_result.datetime_utc '2024-11-26 16:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8VC8 # _exptl.entry_id 8VC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VC8 _cell.length_a 37.987 _cell.length_b 39.622 _cell.length_c 119.239 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 143 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 141 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.367 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 113 n n CHA C4D HEM doub 114 n n CHA HHA HEM sing 115 n n CHB C4A HEM sing 116 n n CHB C1B HEM doub 117 n n CHB HHB HEM sing 118 n n CHC C4B HEM sing 119 n n CHC C1C HEM doub 120 n n CHC HHC HEM sing 121 n n CHD C4C HEM doub 122 n n CHD C1D HEM sing 123 n n CHD HHD HEM sing 124 n n C1A C2A HEM doub 125 n y C1A NA HEM sing 126 n y C2A C3A HEM sing 127 n y C2A CAA HEM sing 128 n n C3A C4A HEM doub 129 n y C3A CMA HEM sing 130 n n C4A NA HEM sing 131 n y CMA HMA HEM sing 132 n n CMA HMAA HEM sing 133 n n CMA HMAB HEM sing 134 n n CAA CBA HEM sing 135 n n CAA HAA HEM sing 136 n n CAA HAAA HEM sing 137 n n CBA CGA HEM sing 138 n n CBA HBA HEM sing 139 n n CBA HBAA HEM sing 140 n n CGA O1A HEM doub 141 n n CGA O2A HEM sing 142 n n C1B C2B HEM sing 143 n n C1B NB HEM sing 144 n n C2B C3B HEM doub 145 n n C2B CMB HEM sing 146 n n C3B C4B HEM sing 147 n n C3B CAB HEM sing 148 n n C4B NB HEM doub 149 n n CMB HMB HEM sing 150 n n CMB HMBA HEM sing 151 n n CMB HMBB HEM sing 152 n n CAB CBB HEM doub 153 n n CAB HAB HEM sing 154 n n CBB HBB HEM sing 155 n n CBB HBBA HEM sing 156 n n C1C C2C HEM sing 157 n y C1C NC HEM sing 158 n y C2C C3C HEM doub 159 n y C2C CMC HEM sing 160 n n C3C C4C HEM sing 161 n y C3C CAC HEM sing 162 n n C4C NC HEM sing 163 n y CMC HMC HEM sing 164 n n CMC HMCA HEM sing 165 n n CMC HMCB HEM sing 166 n n CAC CBC HEM doub 167 n n CAC HAC HEM sing 168 n n CBC HBC HEM sing 169 n n CBC HBCA HEM sing 170 n n C1D C2D HEM sing 171 n n C1D ND HEM doub 172 n n C2D C3D HEM doub 173 n n C2D CMD HEM sing 174 n n C3D C4D HEM sing 175 n n C3D CAD HEM sing 176 n n C4D ND HEM sing 177 n n CMD HMD HEM sing 178 n n CMD HMDA HEM sing 179 n n CMD HMDB HEM sing 180 n n CAD CBD HEM sing 181 n n CAD HAD HEM sing 182 n n CAD HADA HEM sing 183 n n CBD CGD HEM sing 184 n n CBD HBD HEM sing 185 n n CBD HBDA HEM sing 186 n n CGD O1D HEM doub 187 n n CGD O2D HEM sing 188 n n O2A H2A HEM sing 189 n n O2D H2D HEM sing 190 n n FE NA HEM sing 191 n n FE NB HEM sing 192 n n FE NC HEM sing 193 n n FE ND HEM sing 194 n n # _atom_sites.entry_id 8VC8 _atom_sites.fract_transf_matrix[1][1] 0.026325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 3 HEM A 1 302 1 HEM HEM . D 4 HOH A 1 401 16 HOH HOH . D 4 HOH A 2 402 21 HOH HOH . D 4 HOH A 3 403 24 HOH HOH . D 4 HOH A 4 404 55 HOH HOH . D 4 HOH A 5 405 39 HOH HOH . D 4 HOH A 6 406 15 HOH HOH . D 4 HOH A 7 407 23 HOH HOH . D 4 HOH A 8 408 43 HOH HOH . D 4 HOH A 9 409 47 HOH HOH . D 4 HOH A 10 410 38 HOH HOH . D 4 HOH A 11 411 2 HOH HOH . D 4 HOH A 12 412 40 HOH HOH . D 4 HOH A 13 413 8 HOH HOH . D 4 HOH A 14 414 22 HOH HOH . D 4 HOH A 15 415 20 HOH HOH . D 4 HOH A 16 416 56 HOH HOH . D 4 HOH A 17 417 41 HOH HOH . D 4 HOH A 18 418 26 HOH HOH . D 4 HOH A 19 419 27 HOH HOH . D 4 HOH A 20 420 33 HOH HOH . D 4 HOH A 21 421 30 HOH HOH . D 4 HOH A 22 422 4 HOH HOH . D 4 HOH A 23 423 9 HOH HOH . D 4 HOH A 24 424 6 HOH HOH . D 4 HOH A 25 425 32 HOH HOH . D 4 HOH A 26 426 11 HOH HOH . D 4 HOH A 27 427 37 HOH HOH . D 4 HOH A 28 428 3 HOH HOH . D 4 HOH A 29 429 50 HOH HOH . D 4 HOH A 30 430 48 HOH HOH . D 4 HOH A 31 431 42 HOH HOH . D 4 HOH A 32 432 12 HOH HOH . D 4 HOH A 33 433 7 HOH HOH . D 4 HOH A 34 434 19 HOH HOH . D 4 HOH A 35 435 49 HOH HOH . D 4 HOH A 36 436 34 HOH HOH . D 4 HOH A 37 437 17 HOH HOH . D 4 HOH A 38 438 62 HOH HOH . D 4 HOH A 39 439 29 HOH HOH . D 4 HOH A 40 440 10 HOH HOH . D 4 HOH A 41 441 5 HOH HOH . D 4 HOH A 42 442 1 HOH HOH . D 4 HOH A 43 443 51 HOH HOH . D 4 HOH A 44 444 52 HOH HOH . D 4 HOH A 45 445 25 HOH HOH . D 4 HOH A 46 446 13 HOH HOH . D 4 HOH A 47 447 35 HOH HOH . D 4 HOH A 48 448 14 HOH HOH . D 4 HOH A 49 449 59 HOH HOH . D 4 HOH A 50 450 57 HOH HOH . D 4 HOH A 51 451 36 HOH HOH . D 4 HOH A 52 452 31 HOH HOH . D 4 HOH A 53 453 53 HOH HOH . D 4 HOH A 54 454 60 HOH HOH . D 4 HOH A 55 455 45 HOH HOH . D 4 HOH A 56 456 54 HOH HOH . D 4 HOH A 57 457 44 HOH HOH . D 4 HOH A 58 458 58 HOH HOH . D 4 HOH A 59 459 46 HOH HOH . D 4 HOH A 60 460 18 HOH HOH . D 4 HOH A 61 461 28 HOH HOH . D 4 HOH A 62 462 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 4.64 21.04 15.072 1 28.64 ? CHA HEM 302 A 1 HETATM 2 C CHB HEM . . . C 3 4.871 17.877 18.747 1 23.55 ? CHB HEM 302 A 1 HETATM 3 C CHC HEM . . . C 3 6.054 14.233 15.696 1 26.52 ? CHC HEM 302 A 1 HETATM 4 C CHD HEM . . . C 3 5.525 17.364 11.983 1 23.58 ? CHD HEM 302 A 1 HETATM 5 C C1A HEM . . . C 3 4.583 20.468 16.304 1 28.52 ? C1A HEM 302 A 1 HETATM 6 C C2A HEM . . . C 3 4.289 21.202 17.508 1 22.23 ? C2A HEM 302 A 1 HETATM 7 C C3A HEM . . . C 3 4.376 20.313 18.522 1 23.83 ? C3A HEM 302 A 1 HETATM 8 C C4A HEM . . . C 3 4.723 19.003 17.986 1 20.98 ? C4A HEM 302 A 1 HETATM 9 C CMA HEM . . . C 3 4.113 20.604 20.022 1 27.85 ? CMA HEM 302 A 1 HETATM 10 C CAA HEM . . . C 3 3.879 22.711 17.568 1 27.44 ? CAA HEM 302 A 1 HETATM 11 C CBA HEM . . . C 3 5.015 23.576 18.015 1 31.51 ? CBA HEM 302 A 1 HETATM 12 C CGA HEM . . . C 3 4.55 24.97 18.442 1 40.58 ? CGA HEM 302 A 1 HETATM 13 O O1A HEM . . . C 3 3.326 25.254 18.55 1 33.33 ? O1A HEM 302 A 1 HETATM 14 O O2A HEM . . . C 3 5.448 25.805 18.688 1 44.06 ? O2A HEM 302 A 1 HETATM 15 C C1B HEM . . . C 3 5.201 16.627 18.227 1 25.25 ? C1B HEM 302 A 1 HETATM 16 C C2B HEM . . . C 3 5.392 15.424 19.021 1 29.49 ? C2B HEM 302 A 1 HETATM 17 C C3B HEM . . . C 3 5.714 14.448 18.186 1 28.99 ? C3B HEM 302 A 1 HETATM 18 C C4B HEM . . . C 3 5.75 14.943 16.848 1 24.64 ? C4B HEM 302 A 1 HETATM 19 C CMB HEM . . . C 3 5.267 15.168 20.563 1 28.31 ? CMB HEM 302 A 1 HETATM 20 C CAB HEM . . . C 3 6.003 13.034 18.741 1 30.42 ? CAB HEM 302 A 1 HETATM 21 C CBB HEM . . . C 3 6.638 12.139 18.005 1 45.4 ? CBB HEM 302 A 1 HETATM 22 C C1C HEM . . . C 3 6.001 14.768 14.422 1 25.31 ? C1C HEM 302 A 1 HETATM 23 C C2C HEM . . . C 3 6.164 14.053 13.18 1 24.83 ? C2C HEM 302 A 1 HETATM 24 C C3C HEM . . . C 3 6.014 14.892 12.185 1 22.53 ? C3C HEM 302 A 1 HETATM 25 C C4C HEM . . . C 3 5.718 16.204 12.706 1 23.07 ? C4C HEM 302 A 1 HETATM 26 C CMC HEM . . . C 3 6.488 12.543 12.964 1 27.16 ? CMC HEM 302 A 1 HETATM 27 C CAC HEM . . . C 3 6.119 14.421 10.727 1 30.02 ? CAC HEM 302 A 1 HETATM 28 C CBC HEM . . . C 3 5.863 15.25 9.731 1 37.66 ? CBC HEM 302 A 1 HETATM 29 C C1D HEM . . . C 3 5.315 18.604 12.546 1 25.2 ? C1D HEM 302 A 1 HETATM 30 C C2D HEM . . . C 3 5.201 19.842 11.812 1 28.6 ? C2D HEM 302 A 1 HETATM 31 C C3D HEM . . . C 3 4.947 20.827 12.656 1 30.41 ? C3D HEM 302 A 1 HETATM 32 C C4D HEM . . . C 3 4.892 20.265 13.963 1 25.92 ? C4D HEM 302 A 1 HETATM 33 C CMD HEM . . . C 3 5.308 20.118 10.282 1 32.07 ? CMD HEM 302 A 1 HETATM 34 C CAD HEM . . . C 3 4.785 22.314 12.207 1 27.54 ? CAD HEM 302 A 1 HETATM 35 C CBD HEM . . . C 3 3.365 22.828 12.443 1 44.3 ? CBD HEM 302 A 1 HETATM 36 C CGD HEM . . . C 3 2.978 24.013 11.59 1 64.18 ? CGD HEM 302 A 1 HETATM 37 O O1D HEM . . . C 3 1.742 24.302 11.533 1 55.04 ? O1D HEM 302 A 1 HETATM 38 O O2D HEM . . . C 3 3.882 24.652 10.969 1 63.14 ? O2D HEM 302 A 1 HETATM 39 N NA HEM . . . C 3 4.867 19.131 16.606 1 20.52 ? NA HEM 302 A 1 HETATM 40 N NB HEM . . . C 3 5.413 16.329 16.862 1 26.75 ? NB HEM 302 A 1 HETATM 41 N NC HEM . . . C 3 5.69 16.093 14.094 1 25.71 ? NC HEM 302 A 1 HETATM 42 N ND HEM . . . C 3 5.152 18.873 13.944 1 22.01 ? ND HEM 302 A 1 HETATM 43 FE FE HEM . . . C 3 5.57 17.678 15.357 1 23.86 ? FE HEM 302 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #