data_8VCA
#
_model_server_result.job_id            h5epxuYEoW4bY9oA6J3yuw 
_model_server_result.datetime_utc      '2024-12-21 16:42:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vca 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    8VCA 
#
_exptl.entry_id    8VCA 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VCA 
_cell.length_a            83.915 
_cell.length_b            83.915 
_cell.length_c            117.177 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VCA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8VCA 
_atom_sites.fract_transf_matrix[1][1]    0.011917 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008534 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 402 GOL GOL . 
C 2 GOL A 1 402 404 GOL GOL . 
D 2 GOL A 1 403 567 GOL GOL . 
E 3 HOH A 1 501 563 HOH HOH . 
E 3 HOH A 2 502 513 HOH HOH . 
E 3 HOH A 3 503 500 HOH HOH . 
E 3 HOH A 4 504 527 HOH HOH . 
E 3 HOH A 5 505 506 HOH HOH . 
E 3 HOH A 6 506 516 HOH HOH . 
E 3 HOH A 7 507 518 HOH HOH . 
E 3 HOH A 8 508 556 HOH HOH . 
E 3 HOH A 9 509 510 HOH HOH . 
E 3 HOH A 10 510 512 HOH HOH . 
E 3 HOH A 11 511 511 HOH HOH . 
E 3 HOH A 12 512 502 HOH HOH . 
E 3 HOH A 13 513 521 HOH HOH . 
E 3 HOH A 14 514 536 HOH HOH . 
E 3 HOH A 15 515 543 HOH HOH . 
E 3 HOH A 16 516 507 HOH HOH . 
E 3 HOH A 17 517 541 HOH HOH . 
E 3 HOH A 18 518 533 HOH HOH . 
E 3 HOH A 19 519 528 HOH HOH . 
E 3 HOH A 20 520 545 HOH HOH . 
E 3 HOH A 21 521 503 HOH HOH . 
E 3 HOH A 22 522 526 HOH HOH . 
E 3 HOH A 23 523 571 HOH HOH . 
E 3 HOH A 24 524 548 HOH HOH . 
E 3 HOH A 25 525 509 HOH HOH . 
E 3 HOH A 26 526 546 HOH HOH . 
E 3 HOH A 27 527 560 HOH HOH . 
E 3 HOH A 28 528 504 HOH HOH . 
E 3 HOH A 29 529 529 HOH HOH . 
E 3 HOH A 30 530 515 HOH HOH . 
E 3 HOH A 31 531 562 HOH HOH . 
E 3 HOH A 32 532 557 HOH HOH . 
E 3 HOH A 33 533 514 HOH HOH . 
E 3 HOH A 34 534 519 HOH HOH . 
E 3 HOH A 35 535 547 HOH HOH . 
E 3 HOH A 36 536 550 HOH HOH . 
E 3 HOH A 37 537 539 HOH HOH . 
E 3 HOH A 38 538 505 HOH HOH . 
E 3 HOH A 39 539 520 HOH HOH . 
E 3 HOH A 40 540 532 HOH HOH . 
E 3 HOH A 41 541 538 HOH HOH . 
E 3 HOH A 42 542 569 HOH HOH . 
E 3 HOH A 43 543 534 HOH HOH . 
E 3 HOH A 44 544 570 HOH HOH . 
E 3 HOH A 45 545 542 HOH HOH . 
E 3 HOH A 46 546 544 HOH HOH . 
E 3 HOH A 47 547 540 HOH HOH . 
E 3 HOH A 48 548 531 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 12.21 -1.325 24.153 1 43.42 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 2 13.235 -0.52 23.638 1 46.83 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 2 10.996 -0.456 24.467 1 45.18 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 2 11.354 0.515 25.412 1 50.94 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 2 9.874 -1.328 25.027 1 49.15 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 2 8.669 -0.999 24.393 1 50.74 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#