data_8VCG # _model_server_result.job_id ADoHyOKbyKfsKpp_fytyTg _model_server_result.datetime_utc '2025-02-26 17:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8VCG # _exptl.entry_id 8VCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 261.168 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description O-PHOSPHOTYROSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VCG _cell.length_a 67.674 _cell.length_b 67.674 _cell.length_c 46.759 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H12 N O6 P' _chem_comp.formula_weight 261.168 _chem_comp.id PTR _chem_comp.mon_nstd_flag n _chem_comp.name O-PHOSPHOTYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms PHOSPHONOTYROSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PTR sing 277 n n N H PTR sing 278 n n N H2 PTR sing 279 n n CA C PTR sing 280 n n CA CB PTR sing 281 n n CA HA PTR sing 282 n n C O PTR doub 283 n n C OXT PTR sing 284 n n OXT HXT PTR sing 285 n n CB CG PTR sing 286 n n CB HB2 PTR sing 287 n n CB HB3 PTR sing 288 n n CG CD1 PTR doub 289 n y CG CD2 PTR sing 290 n y CD1 CE1 PTR sing 291 n y CD1 HD1 PTR sing 292 n n CD2 CE2 PTR doub 293 n y CD2 HD2 PTR sing 294 n n CE1 CZ PTR doub 295 n y CE1 HE1 PTR sing 296 n n CE2 CZ PTR sing 297 n y CE2 HE2 PTR sing 298 n n CZ OH PTR sing 299 n n OH P PTR sing 300 n n P O1P PTR doub 301 n n P O2P PTR sing 302 n n P O3P PTR sing 303 n n O2P HO2P PTR sing 304 n n O3P HO3P PTR sing 305 n n # _atom_sites.entry_id 8VCG _atom_sites.fract_transf_matrix[1][1] 0.014777 _atom_sites.fract_transf_matrix[1][2] 0.008531 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PTR A 1 301 301 PTR PTR . C 3 HOH A 1 401 178 HOH HOH . C 3 HOH A 2 402 112 HOH HOH . C 3 HOH A 3 403 184 HOH HOH . C 3 HOH A 4 404 141 HOH HOH . C 3 HOH A 5 405 201 HOH HOH . C 3 HOH A 6 406 171 HOH HOH . C 3 HOH A 7 407 137 HOH HOH . C 3 HOH A 8 408 35 HOH HOH . C 3 HOH A 9 409 21 HOH HOH . C 3 HOH A 10 410 99 HOH HOH . C 3 HOH A 11 411 45 HOH HOH . C 3 HOH A 12 412 199 HOH HOH . C 3 HOH A 13 413 172 HOH HOH . C 3 HOH A 14 414 176 HOH HOH . C 3 HOH A 15 415 12 HOH HOH . C 3 HOH A 16 416 41 HOH HOH . C 3 HOH A 17 417 206 HOH HOH . C 3 HOH A 18 418 153 HOH HOH . C 3 HOH A 19 419 123 HOH HOH . C 3 HOH A 20 420 128 HOH HOH . C 3 HOH A 21 421 39 HOH HOH . C 3 HOH A 22 422 165 HOH HOH . C 3 HOH A 23 423 47 HOH HOH . C 3 HOH A 24 424 144 HOH HOH . C 3 HOH A 25 425 56 HOH HOH . C 3 HOH A 26 426 17 HOH HOH . C 3 HOH A 27 427 54 HOH HOH . C 3 HOH A 28 428 134 HOH HOH . C 3 HOH A 29 429 68 HOH HOH . C 3 HOH A 30 430 164 HOH HOH . C 3 HOH A 31 431 168 HOH HOH . C 3 HOH A 32 432 143 HOH HOH . C 3 HOH A 33 433 16 HOH HOH . C 3 HOH A 34 434 186 HOH HOH . C 3 HOH A 35 435 23 HOH HOH . C 3 HOH A 36 436 65 HOH HOH . C 3 HOH A 37 437 58 HOH HOH . C 3 HOH A 38 438 147 HOH HOH . C 3 HOH A 39 439 138 HOH HOH . C 3 HOH A 40 440 8 HOH HOH . C 3 HOH A 41 441 146 HOH HOH . C 3 HOH A 42 442 162 HOH HOH . C 3 HOH A 43 443 7 HOH HOH . C 3 HOH A 44 444 6 HOH HOH . C 3 HOH A 45 445 160 HOH HOH . C 3 HOH A 46 446 129 HOH HOH . C 3 HOH A 47 447 20 HOH HOH . C 3 HOH A 48 448 89 HOH HOH . C 3 HOH A 49 449 49 HOH HOH . C 3 HOH A 50 450 139 HOH HOH . C 3 HOH A 51 451 43 HOH HOH . C 3 HOH A 52 452 161 HOH HOH . C 3 HOH A 53 453 180 HOH HOH . C 3 HOH A 54 454 66 HOH HOH . C 3 HOH A 55 455 119 HOH HOH . C 3 HOH A 56 456 133 HOH HOH . C 3 HOH A 57 457 19 HOH HOH . C 3 HOH A 58 458 22 HOH HOH . C 3 HOH A 59 459 127 HOH HOH . C 3 HOH A 60 460 116 HOH HOH . C 3 HOH A 61 461 174 HOH HOH . C 3 HOH A 62 462 14 HOH HOH . C 3 HOH A 63 463 151 HOH HOH . C 3 HOH A 64 464 48 HOH HOH . C 3 HOH A 65 465 24 HOH HOH . C 3 HOH A 66 466 140 HOH HOH . C 3 HOH A 67 467 83 HOH HOH . C 3 HOH A 68 468 29 HOH HOH . C 3 HOH A 69 469 166 HOH HOH . C 3 HOH A 70 470 44 HOH HOH . C 3 HOH A 71 471 177 HOH HOH . C 3 HOH A 72 472 203 HOH HOH . C 3 HOH A 73 473 27 HOH HOH . C 3 HOH A 74 474 198 HOH HOH . C 3 HOH A 75 475 50 HOH HOH . C 3 HOH A 76 476 86 HOH HOH . C 3 HOH A 77 477 25 HOH HOH . C 3 HOH A 78 478 32 HOH HOH . C 3 HOH A 79 479 57 HOH HOH . C 3 HOH A 80 480 40 HOH HOH . C 3 HOH A 81 481 130 HOH HOH . C 3 HOH A 82 482 5 HOH HOH . C 3 HOH A 83 483 122 HOH HOH . C 3 HOH A 84 484 150 HOH HOH . C 3 HOH A 85 485 31 HOH HOH . C 3 HOH A 86 486 3 HOH HOH . C 3 HOH A 87 487 38 HOH HOH . C 3 HOH A 88 488 196 HOH HOH . C 3 HOH A 89 489 136 HOH HOH . C 3 HOH A 90 490 154 HOH HOH . C 3 HOH A 91 491 15 HOH HOH . C 3 HOH A 92 492 194 HOH HOH . C 3 HOH A 93 493 132 HOH HOH . C 3 HOH A 94 494 64 HOH HOH . C 3 HOH A 95 495 93 HOH HOH . C 3 HOH A 96 496 173 HOH HOH . C 3 HOH A 97 497 62 HOH HOH . C 3 HOH A 98 498 169 HOH HOH . C 3 HOH A 99 499 87 HOH HOH . C 3 HOH A 100 500 181 HOH HOH . C 3 HOH A 101 501 183 HOH HOH . C 3 HOH A 102 502 163 HOH HOH . C 3 HOH A 103 503 85 HOH HOH . C 3 HOH A 104 504 188 HOH HOH . C 3 HOH A 105 505 207 HOH HOH . C 3 HOH A 106 506 92 HOH HOH . C 3 HOH A 107 507 155 HOH HOH . C 3 HOH A 108 508 152 HOH HOH . C 3 HOH A 109 509 156 HOH HOH . C 3 HOH A 110 510 187 HOH HOH . C 3 HOH A 111 511 142 HOH HOH . C 3 HOH A 112 512 145 HOH HOH . C 3 HOH A 113 513 191 HOH HOH . C 3 HOH A 114 514 149 HOH HOH . C 3 HOH A 115 515 148 HOH HOH . C 3 HOH A 116 516 185 HOH HOH . C 3 HOH A 117 517 182 HOH HOH . C 3 HOH A 118 518 202 HOH HOH . C 3 HOH A 119 519 192 HOH HOH . C 3 HOH A 120 520 175 HOH HOH . C 3 HOH A 121 521 167 HOH HOH . C 3 HOH A 122 522 200 HOH HOH . C 3 HOH A 123 523 9 HOH HOH . C 3 HOH A 124 524 158 HOH HOH . C 3 HOH A 125 525 190 HOH HOH . C 3 HOH A 126 526 197 HOH HOH . C 3 HOH A 127 527 135 HOH HOH . C 3 HOH A 128 528 159 HOH HOH . C 3 HOH A 129 529 189 HOH HOH . C 3 HOH A 130 530 205 HOH HOH . C 3 HOH A 131 531 193 HOH HOH . C 3 HOH A 132 532 157 HOH HOH . C 3 HOH A 133 533 37 HOH HOH . C 3 HOH A 134 534 170 HOH HOH . C 3 HOH A 135 535 179 HOH HOH . C 3 HOH A 136 536 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PTR . . . B 2 -20.906 12.402 8.172 1 48.02 ? N PTR 301 A 1 HETATM 2 C CA PTR . . . B 2 -19.618 11.825 7.646 1 43.33 ? CA PTR 301 A 1 HETATM 3 C C PTR . . . B 2 -18.465 12.571 8.311 1 54.5 ? C PTR 301 A 1 HETATM 4 O O PTR . . . B 2 -17.353 12.01 8.253 1 64.65 ? O PTR 301 A 1 HETATM 5 O OXT PTR . . . B 2 -18.695 13.665 8.958 1 67.13 ? OXT PTR 301 A 1 HETATM 6 C CB PTR . . . B 2 -19.595 11.728 6.114 1 39.23 ? CB PTR 301 A 1 HETATM 7 C CG PTR . . . B 2 -18.285 11.379 5.451 1 32.61 ? CG PTR 301 A 1 HETATM 8 C CD1 PTR . . . B 2 -17.83 10.065 5.348 1 30.27 ? CD1 PTR 301 A 1 HETATM 9 C CD2 PTR . . . B 2 -17.513 12.369 4.854 1 32.01 ? CD2 PTR 301 A 1 HETATM 10 C CE1 PTR . . . B 2 -16.618 9.756 4.742 1 31 ? CE1 PTR 301 A 1 HETATM 11 C CE2 PTR . . . B 2 -16.306 12.084 4.232 1 30.22 ? CE2 PTR 301 A 1 HETATM 12 C CZ PTR . . . B 2 -15.881 10.77 4.149 1 26.29 ? CZ PTR 301 A 1 HETATM 13 O OH PTR . . . B 2 -14.61 10.498 3.536 1 27.39 ? OH PTR 301 A 1 HETATM 14 P P PTR . . . B 2 -13.262 10.541 4.411 1 27.52 ? P PTR 301 A 1 HETATM 15 O O1P PTR . . . B 2 -12.115 10.654 3.46 1 26.78 ? O1P PTR 301 A 1 HETATM 16 O O2P PTR . . . B 2 -13.338 11.747 5.299 1 27.1 ? O2P PTR 301 A 1 HETATM 17 O O3P PTR . . . B 2 -13.182 9.286 5.253 1 35.19 ? O3P PTR 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #