data_8VCM
#
_model_server_result.job_id            orKxI1pbTwZ1oCosdxBusw 
_model_server_result.datetime_utc      '2024-12-18 20:52:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vcm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    8VCM 
#
_exptl.entry_id    8VCM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-galactopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.7 
_cell.angle_gamma         90 
_cell.entry_id            8VCM 
_cell.length_a            57.217 
_cell.length_b            41.094 
_cell.length_c            67.938 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VCM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                GLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-galactopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     'alpha-D-galactose;D-galactose;galactose;ALPHA D-GALACTOSE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GLA sing 70 n n 
C1 O1 GLA sing 71 n n 
C1 O5 GLA sing 72 n n 
C1 H1 GLA sing 73 n n 
C2 C3 GLA sing 74 n n 
C2 O2 GLA sing 75 n n 
C2 H2 GLA sing 76 n n 
C3 C4 GLA sing 77 n n 
C3 O3 GLA sing 78 n n 
C3 H3 GLA sing 79 n n 
C4 C5 GLA sing 80 n n 
C4 O4 GLA sing 81 n n 
C4 H4 GLA sing 82 n n 
C5 C6 GLA sing 83 n n 
C5 O5 GLA sing 84 n n 
C5 H5 GLA sing 85 n n 
C6 O6 GLA sing 86 n n 
C6 H61 GLA sing 87 n n 
C6 H62 GLA sing 88 n n 
O1 HO1 GLA sing 89 n n 
O2 HO2 GLA sing 90 n n 
O3 HO3 GLA sing 91 n n 
O4 HO4 GLA sing 92 n n 
O6 HO6 GLA sing 93 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GLA DGalpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GLA a-D-galactopyranose 'COMMON NAME' GMML 1 
GLA a-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
GLA Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8VCM 
_atom_sites.fract_transf_matrix[1][1]    0.017477 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005578 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015451 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GLA A 1 201 201 GLA GLA . 
D 2 GLA A 1 202 202 GLA GLA . 
E 2 GLA A 1 203 203 GLA GLA . 
F 3 MG A 1 204 1 MG MG . 
G 2 GLA B 1 201 201 GLA GLA . 
H 2 GLA B 1 202 202 GLA GLA . 
I 2 GLA B 1 203 203 GLA GLA . 
J 4 HOH A 1 301 33 HOH HOH . 
J 4 HOH A 2 302 26 HOH HOH . 
J 4 HOH A 3 303 32 HOH HOH . 
J 4 HOH A 4 304 42 HOH HOH . 
J 4 HOH A 5 305 10 HOH HOH . 
J 4 HOH A 6 306 23 HOH HOH . 
J 4 HOH A 7 307 51 HOH HOH . 
J 4 HOH A 8 308 37 HOH HOH . 
J 4 HOH A 9 309 53 HOH HOH . 
J 4 HOH A 10 310 48 HOH HOH . 
J 4 HOH A 11 311 4 HOH HOH . 
J 4 HOH A 12 312 29 HOH HOH . 
J 4 HOH A 13 313 6 HOH HOH . 
J 4 HOH A 14 314 14 HOH HOH . 
J 4 HOH A 15 315 21 HOH HOH . 
J 4 HOH A 16 316 35 HOH HOH . 
J 4 HOH A 17 317 5 HOH HOH . 
J 4 HOH A 18 318 40 HOH HOH . 
J 4 HOH A 19 319 41 HOH HOH . 
J 4 HOH A 20 320 11 HOH HOH . 
J 4 HOH A 21 321 30 HOH HOH . 
J 4 HOH A 22 322 44 HOH HOH . 
J 4 HOH A 23 323 3 HOH HOH . 
J 4 HOH A 24 324 55 HOH HOH . 
J 4 HOH A 25 325 45 HOH HOH . 
J 4 HOH A 26 326 71 HOH HOH . 
J 4 HOH A 27 327 79 HOH HOH . 
J 4 HOH A 28 328 16 HOH HOH . 
J 4 HOH A 29 329 19 HOH HOH . 
J 4 HOH A 30 330 38 HOH HOH . 
J 4 HOH A 31 331 18 HOH HOH . 
J 4 HOH A 32 332 66 HOH HOH . 
J 4 HOH A 33 333 27 HOH HOH . 
J 4 HOH A 34 334 47 HOH HOH . 
J 4 HOH A 35 335 20 HOH HOH . 
J 4 HOH A 36 336 70 HOH HOH . 
J 4 HOH A 37 337 59 HOH HOH . 
J 4 HOH A 38 338 75 HOH HOH . 
J 4 HOH A 39 339 77 HOH HOH . 
J 4 HOH A 40 340 69 HOH HOH . 
K 4 HOH B 1 301 57 HOH HOH . 
K 4 HOH B 2 302 24 HOH HOH . 
K 4 HOH B 3 303 63 HOH HOH . 
K 4 HOH B 4 304 22 HOH HOH . 
K 4 HOH B 5 305 17 HOH HOH . 
K 4 HOH B 6 306 34 HOH HOH . 
K 4 HOH B 7 307 8 HOH HOH . 
K 4 HOH B 8 308 25 HOH HOH . 
K 4 HOH B 9 309 15 HOH HOH . 
K 4 HOH B 10 310 2 HOH HOH . 
K 4 HOH B 11 311 1 HOH HOH . 
K 4 HOH B 12 312 56 HOH HOH . 
K 4 HOH B 13 313 7 HOH HOH . 
K 4 HOH B 14 314 36 HOH HOH . 
K 4 HOH B 15 315 49 HOH HOH . 
K 4 HOH B 16 316 68 HOH HOH . 
K 4 HOH B 17 317 39 HOH HOH . 
K 4 HOH B 18 318 12 HOH HOH . 
K 4 HOH B 19 319 58 HOH HOH . 
K 4 HOH B 20 320 62 HOH HOH . 
K 4 HOH B 21 321 43 HOH HOH . 
K 4 HOH B 22 322 46 HOH HOH . 
K 4 HOH B 23 323 67 HOH HOH . 
K 4 HOH B 24 324 65 HOH HOH . 
K 4 HOH B 25 325 60 HOH HOH . 
K 4 HOH B 26 326 31 HOH HOH . 
K 4 HOH B 27 327 28 HOH HOH . 
K 4 HOH B 28 328 13 HOH HOH . 
K 4 HOH B 29 329 78 HOH HOH . 
K 4 HOH B 30 330 52 HOH HOH . 
K 4 HOH B 31 331 76 HOH HOH . 
K 4 HOH B 32 332 54 HOH HOH . 
K 4 HOH B 33 333 64 HOH HOH . 
K 4 HOH B 34 334 73 HOH HOH . 
K 4 HOH B 35 335 80 HOH HOH . 
K 4 HOH B 36 336 50 HOH HOH . 
K 4 HOH B 37 337 74 HOH HOH . 
K 4 HOH B 38 338 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GLA . . . D 2 -8.104 9.333 24.342 1 57.38 ? C1 GLA 202 A 1 
HETATM 2 C C2 GLA . . . D 2 -7.704 9.473 22.867 1 51.1 ? C2 GLA 202 A 1 
HETATM 3 C C3 GLA . . . D 2 -7.319 8.109 22.306 1 47.28 ? C3 GLA 202 A 1 
HETATM 4 C C4 GLA . . . D 2 -6.25 7.437 23.187 1 44.75 ? C4 GLA 202 A 1 
HETATM 5 C C5 GLA . . . D 2 -6.728 7.378 24.644 1 46.64 ? C5 GLA 202 A 1 
HETATM 6 C C6 GLA . . . D 2 -5.672 6.77 25.571 1 45.93 ? C6 GLA 202 A 1 
HETATM 7 O O1 GLA . . . D 2 -9.361 8.715 24.399 1 57.8 ? O1 GLA 202 A 1 
HETATM 8 O O2 GLA . . . D 2 -8.765 10.048 22.145 1 57.09 ? O2 GLA 202 A 1 
HETATM 9 O O3 GLA . . . D 2 -6.911 8.344 20.975 1 47.88 ? O3 GLA 202 A 1 
HETATM 10 O O4 GLA . . . D 2 -5.031 8.14 23.054 1 45.19 ? O4 GLA 202 A 1 
HETATM 11 O O5 GLA . . . D 2 -7.089 8.676 25.093 1 51.58 ? O5 GLA 202 A 1 
HETATM 12 O O6 GLA . . . D 2 -5.87 7.146 26.911 1 44.37 ? O6 GLA 202 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#