data_8VCO # _model_server_result.job_id b8v4t_hQQ4gacrIwHz0G7w _model_server_result.datetime_utc '2024-12-19 05:15:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":205}' # _entry.id 8VCO # _exptl.entry_id 8VCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.68 _cell.angle_gamma 90 _cell.entry_id 8VCO _cell.length_a 73.951 _cell.length_b 64.157 _cell.length_c 75.694 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 182 n n C1 C2 GOL sing 183 n n C1 H11 GOL sing 184 n n C1 H12 GOL sing 185 n n O1 HO1 GOL sing 186 n n C2 O2 GOL sing 187 n n C2 C3 GOL sing 188 n n C2 H2 GOL sing 189 n n O2 HO2 GOL sing 190 n n C3 O3 GOL sing 191 n n C3 H31 GOL sing 192 n n C3 H32 GOL sing 193 n n O3 HO3 GOL sing 194 n n # _atom_sites.entry_id 8VCO _atom_sites.fract_transf_matrix[1][1] 0.013522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006502 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A2G A 1 201 201 A2G A2G . D 2 A2G A 1 202 202 A2G A2G . E 3 GOL A 1 203 204 GOL GOL . F 3 GOL A 1 204 205 GOL GOL . G 3 GOL A 1 205 209 GOL GOL . H 4 A1AAJ A 1 206 210 A1AAJ LIG . I 2 A2G B 1 201 201 A2G A2G . J 2 A2G B 1 202 202 A2G A2G . K 2 A2G B 1 203 203 A2G A2G . L 3 GOL B 1 204 204 GOL GOL . M 3 GOL B 1 205 205 GOL GOL . N 3 GOL B 1 206 207 GOL GOL . O 3 GOL B 1 207 208 GOL GOL . P 5 ACT B 1 208 209 ACT ACT . Q 6 PEG B 1 209 210 PEG PEG . R 7 HOH A 1 301 153 HOH HOH . R 7 HOH A 2 302 65 HOH HOH . R 7 HOH A 3 303 171 HOH HOH . R 7 HOH A 4 304 275 HOH HOH . R 7 HOH A 5 305 107 HOH HOH . R 7 HOH A 6 306 90 HOH HOH . R 7 HOH A 7 307 287 HOH HOH . R 7 HOH A 8 308 151 HOH HOH . R 7 HOH A 9 309 122 HOH HOH . R 7 HOH A 10 310 25 HOH HOH . R 7 HOH A 11 311 111 HOH HOH . R 7 HOH A 12 312 135 HOH HOH . R 7 HOH A 13 313 100 HOH HOH . R 7 HOH A 14 314 73 HOH HOH . R 7 HOH A 15 315 126 HOH HOH . R 7 HOH A 16 316 220 HOH HOH . R 7 HOH A 17 317 256 HOH HOH . R 7 HOH A 18 318 172 HOH HOH . R 7 HOH A 19 319 76 HOH HOH . R 7 HOH A 20 320 221 HOH HOH . R 7 HOH A 21 321 273 HOH HOH . R 7 HOH A 22 322 77 HOH HOH . R 7 HOH A 23 323 105 HOH HOH . R 7 HOH A 24 324 81 HOH HOH . R 7 HOH A 25 325 176 HOH HOH . R 7 HOH A 26 326 47 HOH HOH . R 7 HOH A 27 327 282 HOH HOH . R 7 HOH A 28 328 123 HOH HOH . R 7 HOH A 29 329 8 HOH HOH . R 7 HOH A 30 330 184 HOH HOH . R 7 HOH A 31 331 40 HOH HOH . R 7 HOH A 32 332 133 HOH HOH . R 7 HOH A 33 333 14 HOH HOH . R 7 HOH A 34 334 131 HOH HOH . R 7 HOH A 35 335 63 HOH HOH . R 7 HOH A 36 336 181 HOH HOH . R 7 HOH A 37 337 98 HOH HOH . R 7 HOH A 38 338 276 HOH HOH . R 7 HOH A 39 339 60 HOH HOH . R 7 HOH A 40 340 18 HOH HOH . R 7 HOH A 41 341 86 HOH HOH . R 7 HOH A 42 342 197 HOH HOH . R 7 HOH A 43 343 225 HOH HOH . R 7 HOH A 44 344 202 HOH HOH . R 7 HOH A 45 345 11 HOH HOH . R 7 HOH A 46 346 251 HOH HOH . R 7 HOH A 47 347 58 HOH HOH . R 7 HOH A 48 348 5 HOH HOH . R 7 HOH A 49 349 116 HOH HOH . R 7 HOH A 50 350 165 HOH HOH . R 7 HOH A 51 351 79 HOH HOH . R 7 HOH A 52 352 22 HOH HOH . R 7 HOH A 53 353 39 HOH HOH . R 7 HOH A 54 354 16 HOH HOH . R 7 HOH A 55 355 102 HOH HOH . R 7 HOH A 56 356 173 HOH HOH . R 7 HOH A 57 357 118 HOH HOH . R 7 HOH A 58 358 20 HOH HOH . R 7 HOH A 59 359 156 HOH HOH . R 7 HOH A 60 360 50 HOH HOH . R 7 HOH A 61 361 281 HOH HOH . R 7 HOH A 62 362 89 HOH HOH . R 7 HOH A 63 363 245 HOH HOH . R 7 HOH A 64 364 145 HOH HOH . R 7 HOH A 65 365 141 HOH HOH . R 7 HOH A 66 366 200 HOH HOH . R 7 HOH A 67 367 163 HOH HOH . R 7 HOH A 68 368 207 HOH HOH . R 7 HOH A 69 369 120 HOH HOH . R 7 HOH A 70 370 238 HOH HOH . R 7 HOH A 71 371 94 HOH HOH . R 7 HOH A 72 372 134 HOH HOH . R 7 HOH A 73 373 26 HOH HOH . R 7 HOH A 74 374 64 HOH HOH . R 7 HOH A 75 375 92 HOH HOH . R 7 HOH A 76 376 228 HOH HOH . R 7 HOH A 77 377 169 HOH HOH . R 7 HOH A 78 378 187 HOH HOH . R 7 HOH A 79 379 239 HOH HOH . R 7 HOH A 80 380 168 HOH HOH . R 7 HOH A 81 381 12 HOH HOH . R 7 HOH A 82 382 19 HOH HOH . R 7 HOH A 83 383 112 HOH HOH . R 7 HOH A 84 384 85 HOH HOH . R 7 HOH A 85 385 150 HOH HOH . R 7 HOH A 86 386 164 HOH HOH . R 7 HOH A 87 387 167 HOH HOH . R 7 HOH A 88 388 140 HOH HOH . R 7 HOH A 89 389 152 HOH HOH . R 7 HOH A 90 390 259 HOH HOH . R 7 HOH A 91 391 193 HOH HOH . R 7 HOH A 92 392 71 HOH HOH . R 7 HOH A 93 393 48 HOH HOH . R 7 HOH A 94 394 99 HOH HOH . R 7 HOH A 95 395 272 HOH HOH . R 7 HOH A 96 396 241 HOH HOH . R 7 HOH A 97 397 215 HOH HOH . R 7 HOH A 98 398 185 HOH HOH . R 7 HOH A 99 399 51 HOH HOH . R 7 HOH A 100 400 103 HOH HOH . R 7 HOH A 101 401 66 HOH HOH . R 7 HOH A 102 402 161 HOH HOH . R 7 HOH A 103 403 68 HOH HOH . R 7 HOH A 104 404 59 HOH HOH . R 7 HOH A 105 405 250 HOH HOH . R 7 HOH A 106 406 224 HOH HOH . R 7 HOH A 107 407 240 HOH HOH . R 7 HOH A 108 408 110 HOH HOH . R 7 HOH A 109 409 155 HOH HOH . R 7 HOH A 110 410 196 HOH HOH . R 7 HOH A 111 411 263 HOH HOH . R 7 HOH A 112 412 283 HOH HOH . R 7 HOH A 113 413 217 HOH HOH . R 7 HOH A 114 414 279 HOH HOH . R 7 HOH A 115 415 284 HOH HOH . R 7 HOH A 116 416 252 HOH HOH . R 7 HOH A 117 417 199 HOH HOH . R 7 HOH A 118 418 148 HOH HOH . R 7 HOH A 119 419 162 HOH HOH . R 7 HOH A 120 420 246 HOH HOH . R 7 HOH A 121 421 277 HOH HOH . R 7 HOH A 122 422 235 HOH HOH . R 7 HOH A 123 423 257 HOH HOH . R 7 HOH A 124 424 286 HOH HOH . R 7 HOH A 125 425 278 HOH HOH . R 7 HOH A 126 426 46 HOH HOH . R 7 HOH A 127 427 125 HOH HOH . R 7 HOH A 128 428 146 HOH HOH . R 7 HOH A 129 429 267 HOH HOH . R 7 HOH A 130 430 280 HOH HOH . S 7 HOH B 1 301 179 HOH HOH . S 7 HOH B 2 302 201 HOH HOH . S 7 HOH B 3 303 180 HOH HOH . S 7 HOH B 4 304 144 HOH HOH . S 7 HOH B 5 305 219 HOH HOH . S 7 HOH B 6 306 255 HOH HOH . S 7 HOH B 7 307 194 HOH HOH . S 7 HOH B 8 308 158 HOH HOH . S 7 HOH B 9 309 290 HOH HOH . S 7 HOH B 10 310 129 HOH HOH . S 7 HOH B 11 311 243 HOH HOH . S 7 HOH B 12 312 61 HOH HOH . S 7 HOH B 13 313 233 HOH HOH . S 7 HOH B 14 314 223 HOH HOH . S 7 HOH B 15 315 115 HOH HOH . S 7 HOH B 16 316 13 HOH HOH . S 7 HOH B 17 317 157 HOH HOH . S 7 HOH B 18 318 49 HOH HOH . S 7 HOH B 19 319 95 HOH HOH . S 7 HOH B 20 320 230 HOH HOH . S 7 HOH B 21 321 288 HOH HOH . S 7 HOH B 22 322 31 HOH HOH . S 7 HOH B 23 323 10 HOH HOH . S 7 HOH B 24 324 292 HOH HOH . S 7 HOH B 25 325 270 HOH HOH . S 7 HOH B 26 326 226 HOH HOH . S 7 HOH B 27 327 1 HOH HOH . S 7 HOH B 28 328 142 HOH HOH . S 7 HOH B 29 329 78 HOH HOH . S 7 HOH B 30 330 269 HOH HOH . S 7 HOH B 31 331 104 HOH HOH . S 7 HOH B 32 332 82 HOH HOH . S 7 HOH B 33 333 45 HOH HOH . S 7 HOH B 34 334 34 HOH HOH . S 7 HOH B 35 335 117 HOH HOH . S 7 HOH B 36 336 137 HOH HOH . S 7 HOH B 37 337 32 HOH HOH . S 7 HOH B 38 338 24 HOH HOH . S 7 HOH B 39 339 33 HOH HOH . S 7 HOH B 40 340 6 HOH HOH . S 7 HOH B 41 341 21 HOH HOH . S 7 HOH B 42 342 56 HOH HOH . S 7 HOH B 43 343 3 HOH HOH . S 7 HOH B 44 344 159 HOH HOH . S 7 HOH B 45 345 149 HOH HOH . S 7 HOH B 46 346 124 HOH HOH . S 7 HOH B 47 347 258 HOH HOH . S 7 HOH B 48 348 37 HOH HOH . S 7 HOH B 49 349 4 HOH HOH . S 7 HOH B 50 350 69 HOH HOH . S 7 HOH B 51 351 143 HOH HOH . S 7 HOH B 52 352 7 HOH HOH . S 7 HOH B 53 353 36 HOH HOH . S 7 HOH B 54 354 2 HOH HOH . S 7 HOH B 55 355 54 HOH HOH . S 7 HOH B 56 356 113 HOH HOH . S 7 HOH B 57 357 29 HOH HOH . S 7 HOH B 58 358 265 HOH HOH . S 7 HOH B 59 359 44 HOH HOH . S 7 HOH B 60 360 75 HOH HOH . S 7 HOH B 61 361 30 HOH HOH . S 7 HOH B 62 362 190 HOH HOH . S 7 HOH B 63 363 213 HOH HOH . S 7 HOH B 64 364 192 HOH HOH . S 7 HOH B 65 365 62 HOH HOH . S 7 HOH B 66 366 234 HOH HOH . S 7 HOH B 67 367 237 HOH HOH . S 7 HOH B 68 368 186 HOH HOH . S 7 HOH B 69 369 74 HOH HOH . S 7 HOH B 70 370 138 HOH HOH . S 7 HOH B 71 371 160 HOH HOH . S 7 HOH B 72 372 114 HOH HOH . S 7 HOH B 73 373 214 HOH HOH . S 7 HOH B 74 374 55 HOH HOH . S 7 HOH B 75 375 264 HOH HOH . S 7 HOH B 76 376 147 HOH HOH . S 7 HOH B 77 377 206 HOH HOH . S 7 HOH B 78 378 91 HOH HOH . S 7 HOH B 79 379 119 HOH HOH . S 7 HOH B 80 380 130 HOH HOH . S 7 HOH B 81 381 242 HOH HOH . S 7 HOH B 82 382 15 HOH HOH . S 7 HOH B 83 383 84 HOH HOH . S 7 HOH B 84 384 232 HOH HOH . S 7 HOH B 85 385 260 HOH HOH . S 7 HOH B 86 386 88 HOH HOH . S 7 HOH B 87 387 285 HOH HOH . S 7 HOH B 88 388 198 HOH HOH . S 7 HOH B 89 389 106 HOH HOH . S 7 HOH B 90 390 23 HOH HOH . S 7 HOH B 91 391 212 HOH HOH . S 7 HOH B 92 392 154 HOH HOH . S 7 HOH B 93 393 17 HOH HOH . S 7 HOH B 94 394 109 HOH HOH . S 7 HOH B 95 395 9 HOH HOH . S 7 HOH B 96 396 231 HOH HOH . S 7 HOH B 97 397 203 HOH HOH . S 7 HOH B 98 398 222 HOH HOH . S 7 HOH B 99 399 52 HOH HOH . S 7 HOH B 100 400 244 HOH HOH . S 7 HOH B 101 401 27 HOH HOH . S 7 HOH B 102 402 35 HOH HOH . S 7 HOH B 103 403 43 HOH HOH . S 7 HOH B 104 404 101 HOH HOH . S 7 HOH B 105 405 72 HOH HOH . S 7 HOH B 106 406 80 HOH HOH . S 7 HOH B 107 407 271 HOH HOH . S 7 HOH B 108 408 67 HOH HOH . S 7 HOH B 109 409 139 HOH HOH . S 7 HOH B 110 410 42 HOH HOH . S 7 HOH B 111 411 248 HOH HOH . S 7 HOH B 112 412 182 HOH HOH . S 7 HOH B 113 413 261 HOH HOH . S 7 HOH B 114 414 87 HOH HOH . S 7 HOH B 115 415 83 HOH HOH . S 7 HOH B 116 416 289 HOH HOH . S 7 HOH B 117 417 236 HOH HOH . S 7 HOH B 118 418 291 HOH HOH . S 7 HOH B 119 419 183 HOH HOH . S 7 HOH B 120 420 262 HOH HOH . S 7 HOH B 121 421 229 HOH HOH . S 7 HOH B 122 422 216 HOH HOH . S 7 HOH B 123 423 254 HOH HOH . S 7 HOH B 124 424 266 HOH HOH . S 7 HOH B 125 425 274 HOH HOH . S 7 HOH B 126 426 132 HOH HOH . S 7 HOH B 127 427 127 HOH HOH . S 7 HOH B 128 428 253 HOH HOH . S 7 HOH B 129 429 38 HOH HOH . S 7 HOH B 130 430 170 HOH HOH . S 7 HOH B 131 431 128 HOH HOH . S 7 HOH B 132 432 227 HOH HOH . S 7 HOH B 133 433 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 3 -32.602 -0.827 24.69 1 30.03 ? C1 GOL 205 B 1 HETATM 2 O O1 GOL . . . M 3 -32.992 -1.478 23.502 1 32.87 ? O1 GOL 205 B 1 HETATM 3 C C2 GOL . . . M 3 -31.317 -0.065 24.471 1 33.49 ? C2 GOL 205 B 1 HETATM 4 O O2 GOL . . . M 3 -30.274 -0.881 24.995 1 32.76 ? O2 GOL 205 B 1 HETATM 5 C C3 GOL . . . M 3 -31.151 0.28 22.991 1 24.69 ? C3 GOL 205 B 1 HETATM 6 O O3 GOL . . . M 3 -29.814 0.694 22.777 1 18.93 ? O3 GOL 205 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #