data_8VCY
#
_model_server_result.job_id            wJBeMAbRv4GqEI-HDzT39Q 
_model_server_result.datetime_utc      '2024-12-20 10:49:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vcy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    8VCY 
#
_exptl.entry_id    8VCY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VCY 
_cell.length_a            67.803 
_cell.length_b            106.695 
_cell.length_c            132.962 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 I N N 
? 7 J N N 
? 7 N N N 
? 7 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 75 A CYS 72 1_555 C SG CYS 14 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 110 A CYS 107 1_555 A SG CYS 166 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 D SG CYS 21 D CYS 23 1_555 D SG CYS 87 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 D SG CYS 132 D CYS 149 1_555 D SG CYS 182 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 157 D CYS 174 1_555 E SG CYS 166 E CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 E SG CYS 21 E CYS 23 1_555 E SG CYS 89 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf9 E SG CYS 140 E CYS 155 1_555 E SG CYS 205 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 121 A ASN 118 1_555 F C1 NAG . A NAG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 B ND2 ASN 19 B ASN 19 1_555 H C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8VCY 
_atom_sites.fract_transf_matrix[1][1]    0.014749 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009373 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007521 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG A 1 200 200 NAG NAG . 
G 7 GOL A 1 201 201 GOL GOL . 
H 6 NAG B 1 201 201 NAG NAG . 
I 7 GOL B 1 202 202 GOL GOL . 
J 7 GOL D 1 301 301 GOL GOL . 
K 8 PO4 D 1 302 1 PO4 PO4 . 
L 8 PO4 D 1 303 2 PO4 PO4 . 
M 8 PO4 D 1 304 4 PO4 PO4 . 
N 7 GOL E 1 301 301 GOL GOL . 
O 7 GOL E 1 302 302 GOL GOL . 
P 8 PO4 E 1 303 3 PO4 PO4 . 
Q 9 HOH A 1 301 102 HOH HOH . 
Q 9 HOH A 2 302 118 HOH HOH . 
Q 9 HOH A 3 303 30 HOH HOH . 
Q 9 HOH A 4 304 41 HOH HOH . 
Q 9 HOH A 5 305 32 HOH HOH . 
Q 9 HOH A 6 306 84 HOH HOH . 
Q 9 HOH A 7 307 154 HOH HOH . 
Q 9 HOH A 8 308 119 HOH HOH . 
Q 9 HOH A 9 309 40 HOH HOH . 
Q 9 HOH A 10 310 3 HOH HOH . 
Q 9 HOH A 11 311 147 HOH HOH . 
Q 9 HOH A 12 312 46 HOH HOH . 
R 9 HOH B 1 301 18 HOH HOH . 
R 9 HOH B 2 302 9 HOH HOH . 
R 9 HOH B 3 303 85 HOH HOH . 
R 9 HOH B 4 304 139 HOH HOH . 
R 9 HOH B 5 305 6 HOH HOH . 
R 9 HOH B 6 306 138 HOH HOH . 
R 9 HOH B 7 307 28 HOH HOH . 
R 9 HOH B 8 308 144 HOH HOH . 
R 9 HOH B 9 309 81 HOH HOH . 
R 9 HOH B 10 310 125 HOH HOH . 
R 9 HOH B 11 311 158 HOH HOH . 
R 9 HOH B 12 312 159 HOH HOH . 
R 9 HOH B 13 313 83 HOH HOH . 
R 9 HOH B 14 314 7 HOH HOH . 
R 9 HOH B 15 315 70 HOH HOH . 
R 9 HOH B 16 316 122 HOH HOH . 
R 9 HOH B 17 317 69 HOH HOH . 
R 9 HOH B 18 318 126 HOH HOH . 
R 9 HOH B 19 319 160 HOH HOH . 
R 9 HOH B 20 320 8 HOH HOH . 
R 9 HOH B 21 321 33 HOH HOH . 
R 9 HOH B 22 322 37 HOH HOH . 
R 9 HOH B 23 323 128 HOH HOH . 
S 9 HOH C 1 101 5 HOH HOH . 
S 9 HOH C 2 102 64 HOH HOH . 
S 9 HOH C 3 103 31 HOH HOH . 
T 9 HOH D 1 401 117 HOH HOH . 
T 9 HOH D 2 402 78 HOH HOH . 
T 9 HOH D 3 403 35 HOH HOH . 
T 9 HOH D 4 404 161 HOH HOH . 
T 9 HOH D 5 405 10 HOH HOH . 
T 9 HOH D 6 406 146 HOH HOH . 
T 9 HOH D 7 407 73 HOH HOH . 
T 9 HOH D 8 408 106 HOH HOH . 
T 9 HOH D 9 409 150 HOH HOH . 
T 9 HOH D 10 410 105 HOH HOH . 
T 9 HOH D 11 411 91 HOH HOH . 
T 9 HOH D 12 412 80 HOH HOH . 
T 9 HOH D 13 413 77 HOH HOH . 
T 9 HOH D 14 414 162 HOH HOH . 
T 9 HOH D 15 415 88 HOH HOH . 
T 9 HOH D 16 416 111 HOH HOH . 
T 9 HOH D 17 417 24 HOH HOH . 
T 9 HOH D 18 418 26 HOH HOH . 
T 9 HOH D 19 419 23 HOH HOH . 
T 9 HOH D 20 420 16 HOH HOH . 
T 9 HOH D 21 421 86 HOH HOH . 
T 9 HOH D 22 422 153 HOH HOH . 
T 9 HOH D 23 423 152 HOH HOH . 
T 9 HOH D 24 424 20 HOH HOH . 
T 9 HOH D 25 425 131 HOH HOH . 
T 9 HOH D 26 426 68 HOH HOH . 
T 9 HOH D 27 427 112 HOH HOH . 
T 9 HOH D 28 428 19 HOH HOH . 
T 9 HOH D 29 429 45 HOH HOH . 
T 9 HOH D 30 430 129 HOH HOH . 
T 9 HOH D 31 431 130 HOH HOH . 
T 9 HOH D 32 432 167 HOH HOH . 
T 9 HOH D 33 433 98 HOH HOH . 
T 9 HOH D 34 434 67 HOH HOH . 
T 9 HOH D 35 435 36 HOH HOH . 
T 9 HOH D 36 436 113 HOH HOH . 
T 9 HOH D 37 437 148 HOH HOH . 
T 9 HOH D 38 438 66 HOH HOH . 
T 9 HOH D 39 439 115 HOH HOH . 
T 9 HOH D 40 440 79 HOH HOH . 
T 9 HOH D 41 441 132 HOH HOH . 
T 9 HOH D 42 442 90 HOH HOH . 
T 9 HOH D 43 443 89 HOH HOH . 
T 9 HOH D 44 444 87 HOH HOH . 
T 9 HOH D 45 445 151 HOH HOH . 
T 9 HOH D 46 446 34 HOH HOH . 
T 9 HOH D 47 447 109 HOH HOH . 
U 9 HOH E 1 401 124 HOH HOH . 
U 9 HOH E 2 402 48 HOH HOH . 
U 9 HOH E 3 403 63 HOH HOH . 
U 9 HOH E 4 404 92 HOH HOH . 
U 9 HOH E 5 405 29 HOH HOH . 
U 9 HOH E 6 406 94 HOH HOH . 
U 9 HOH E 7 407 97 HOH HOH . 
U 9 HOH E 8 408 74 HOH HOH . 
U 9 HOH E 9 409 95 HOH HOH . 
U 9 HOH E 10 410 145 HOH HOH . 
U 9 HOH E 11 411 76 HOH HOH . 
U 9 HOH E 12 412 13 HOH HOH . 
U 9 HOH E 13 413 17 HOH HOH . 
U 9 HOH E 14 414 55 HOH HOH . 
U 9 HOH E 15 415 52 HOH HOH . 
U 9 HOH E 16 416 114 HOH HOH . 
U 9 HOH E 17 417 99 HOH HOH . 
U 9 HOH E 18 418 47 HOH HOH . 
U 9 HOH E 19 419 141 HOH HOH . 
U 9 HOH E 20 420 165 HOH HOH . 
U 9 HOH E 21 421 54 HOH HOH . 
U 9 HOH E 22 422 53 HOH HOH . 
U 9 HOH E 23 423 61 HOH HOH . 
U 9 HOH E 24 424 2 HOH HOH . 
U 9 HOH E 25 425 12 HOH HOH . 
U 9 HOH E 26 426 116 HOH HOH . 
U 9 HOH E 27 427 25 HOH HOH . 
U 9 HOH E 28 428 163 HOH HOH . 
U 9 HOH E 29 429 123 HOH HOH . 
U 9 HOH E 30 430 107 HOH HOH . 
U 9 HOH E 31 431 133 HOH HOH . 
U 9 HOH E 32 432 56 HOH HOH . 
U 9 HOH E 33 433 60 HOH HOH . 
U 9 HOH E 34 434 22 HOH HOH . 
U 9 HOH E 35 435 134 HOH HOH . 
U 9 HOH E 36 436 137 HOH HOH . 
U 9 HOH E 37 437 62 HOH HOH . 
U 9 HOH E 38 438 143 HOH HOH . 
U 9 HOH E 39 439 75 HOH HOH . 
U 9 HOH E 40 440 11 HOH HOH . 
U 9 HOH E 41 441 50 HOH HOH . 
U 9 HOH E 42 442 149 HOH HOH . 
U 9 HOH E 43 443 157 HOH HOH . 
U 9 HOH E 44 444 135 HOH HOH . 
U 9 HOH E 45 445 21 HOH HOH . 
U 9 HOH E 46 446 136 HOH HOH . 
U 9 HOH E 47 447 27 HOH HOH . 
U 9 HOH E 48 448 142 HOH HOH . 
U 9 HOH E 49 449 164 HOH HOH . 
U 9 HOH E 50 450 65 HOH HOH . 
U 9 HOH E 51 451 166 HOH HOH . 
U 9 HOH E 52 452 14 HOH HOH . 
U 9 HOH E 53 453 58 HOH HOH . 
U 9 HOH E 54 454 59 HOH HOH . 
U 9 HOH E 55 455 93 HOH HOH . 
U 9 HOH E 56 456 110 HOH HOH . 
U 9 HOH E 57 457 51 HOH HOH . 
U 9 HOH E 58 458 57 HOH HOH . 
U 9 HOH E 59 459 15 HOH HOH . 
U 9 HOH E 60 460 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 7 -7.753 27.221 22.545 1 53.57 ? C1 GOL 202 B 1 
HETATM 2 O O1 GOL . . . I 7 -6.574 27.828 22.981 1 39.45 ? O1 GOL 202 B 1 
HETATM 3 C C2 GOL . . . I 7 -8.07 26.088 23.552 1 55.71 ? C2 GOL 202 B 1 
HETATM 4 O O2 GOL . . . I 7 -9.173 26.38 24.341 1 69.14 ? O2 GOL 202 B 1 
HETATM 5 C C3 GOL . . . I 7 -8.279 24.823 22.688 1 48.49 ? C3 GOL 202 B 1 
HETATM 6 O O3 GOL . . . I 7 -7.805 23.748 23.441 1 49.8 ? O3 GOL 202 B 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           55 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           729 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#