data_8VEO # _model_server_result.job_id Eg5-4WHFoEoONkGGtSvcAQ _model_server_result.datetime_utc '2024-12-23 09:02:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8veo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":705}' # _entry.id 8VEO # _exptl.entry_id 8VEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEO _cell.length_a 101.68 _cell.length_b 138.88 _cell.length_c 178.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 P N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8VEO _atom_sites.fract_transf_matrix[1][1] 0.009835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 EDO A 1 702 1 EDO EDO . E 4 EDO A 1 703 2 EDO EDO . F 4 EDO A 1 704 3 EDO EDO . G 4 EDO A 1 705 4 EDO EDO . H 4 EDO A 1 706 5 EDO EDO . I 4 EDO A 1 707 6 EDO EDO . J 4 EDO A 1 708 7 EDO EDO . K 4 EDO A 1 709 8 EDO EDO . L 4 EDO A 1 710 9 EDO EDO . M 5 GOL A 1 711 1 GOL GOL . N 6 PEG A 1 712 1 PEG PEG . O 6 PEG A 1 713 2 PEG PEG . P 4 EDO B 1 401 10 EDO EDO . Q 7 HOH A 1 801 4 HOH HOH . Q 7 HOH A 2 802 7 HOH HOH . Q 7 HOH A 3 803 81 HOH HOH . Q 7 HOH A 4 804 110 HOH HOH . Q 7 HOH A 5 805 100 HOH HOH . Q 7 HOH A 6 806 106 HOH HOH . Q 7 HOH A 7 807 80 HOH HOH . Q 7 HOH A 8 808 28 HOH HOH . Q 7 HOH A 9 809 62 HOH HOH . Q 7 HOH A 10 810 17 HOH HOH . Q 7 HOH A 11 811 41 HOH HOH . Q 7 HOH A 12 812 32 HOH HOH . Q 7 HOH A 13 813 111 HOH HOH . Q 7 HOH A 14 814 23 HOH HOH . Q 7 HOH A 15 815 67 HOH HOH . Q 7 HOH A 16 816 12 HOH HOH . Q 7 HOH A 17 817 90 HOH HOH . Q 7 HOH A 18 818 15 HOH HOH . Q 7 HOH A 19 819 5 HOH HOH . Q 7 HOH A 20 820 19 HOH HOH . Q 7 HOH A 21 821 71 HOH HOH . Q 7 HOH A 22 822 69 HOH HOH . Q 7 HOH A 23 823 25 HOH HOH . Q 7 HOH A 24 824 18 HOH HOH . Q 7 HOH A 25 825 40 HOH HOH . Q 7 HOH A 26 826 104 HOH HOH . Q 7 HOH A 27 827 91 HOH HOH . Q 7 HOH A 28 828 98 HOH HOH . Q 7 HOH A 29 829 99 HOH HOH . Q 7 HOH A 30 830 82 HOH HOH . Q 7 HOH A 31 831 94 HOH HOH . Q 7 HOH A 32 832 70 HOH HOH . Q 7 HOH A 33 833 20 HOH HOH . Q 7 HOH A 34 834 6 HOH HOH . Q 7 HOH A 35 835 24 HOH HOH . Q 7 HOH A 36 836 21 HOH HOH . Q 7 HOH A 37 837 39 HOH HOH . Q 7 HOH A 38 838 79 HOH HOH . Q 7 HOH A 39 839 95 HOH HOH . Q 7 HOH A 40 840 43 HOH HOH . Q 7 HOH A 41 841 78 HOH HOH . Q 7 HOH A 42 842 16 HOH HOH . Q 7 HOH A 43 843 88 HOH HOH . Q 7 HOH A 44 844 34 HOH HOH . Q 7 HOH A 45 845 72 HOH HOH . Q 7 HOH A 46 846 45 HOH HOH . Q 7 HOH A 47 847 46 HOH HOH . Q 7 HOH A 48 848 55 HOH HOH . Q 7 HOH A 49 849 50 HOH HOH . Q 7 HOH A 50 850 33 HOH HOH . Q 7 HOH A 51 851 74 HOH HOH . Q 7 HOH A 52 852 42 HOH HOH . Q 7 HOH A 53 853 30 HOH HOH . Q 7 HOH A 54 854 2 HOH HOH . Q 7 HOH A 55 855 48 HOH HOH . Q 7 HOH A 56 856 89 HOH HOH . Q 7 HOH A 57 857 29 HOH HOH . Q 7 HOH A 58 858 107 HOH HOH . Q 7 HOH A 59 859 44 HOH HOH . Q 7 HOH A 60 860 22 HOH HOH . Q 7 HOH A 61 861 105 HOH HOH . Q 7 HOH A 62 862 97 HOH HOH . Q 7 HOH A 63 863 36 HOH HOH . Q 7 HOH A 64 864 14 HOH HOH . Q 7 HOH A 65 865 31 HOH HOH . Q 7 HOH A 66 866 35 HOH HOH . Q 7 HOH A 67 867 103 HOH HOH . Q 7 HOH A 68 868 85 HOH HOH . Q 7 HOH A 69 869 27 HOH HOH . Q 7 HOH A 70 870 52 HOH HOH . Q 7 HOH A 71 871 26 HOH HOH . Q 7 HOH A 72 872 61 HOH HOH . Q 7 HOH A 73 873 11 HOH HOH . Q 7 HOH A 74 874 51 HOH HOH . Q 7 HOH A 75 875 73 HOH HOH . Q 7 HOH A 76 876 63 HOH HOH . Q 7 HOH A 77 877 83 HOH HOH . Q 7 HOH A 78 878 86 HOH HOH . Q 7 HOH A 79 879 109 HOH HOH . Q 7 HOH A 80 880 87 HOH HOH . Q 7 HOH A 81 881 68 HOH HOH . Q 7 HOH A 82 882 84 HOH HOH . Q 7 HOH A 83 883 96 HOH HOH . Q 7 HOH A 84 884 59 HOH HOH . Q 7 HOH A 85 885 60 HOH HOH . Q 7 HOH A 86 886 58 HOH HOH . R 7 HOH B 1 501 102 HOH HOH . R 7 HOH B 2 502 108 HOH HOH . R 7 HOH B 3 503 57 HOH HOH . R 7 HOH B 4 504 13 HOH HOH . R 7 HOH B 5 505 54 HOH HOH . R 7 HOH B 6 506 114 HOH HOH . R 7 HOH B 7 507 37 HOH HOH . R 7 HOH B 8 508 112 HOH HOH . R 7 HOH B 9 509 10 HOH HOH . R 7 HOH B 10 510 9 HOH HOH . R 7 HOH B 11 511 66 HOH HOH . R 7 HOH B 12 512 3 HOH HOH . R 7 HOH B 13 513 1 HOH HOH . R 7 HOH B 14 514 113 HOH HOH . R 7 HOH B 15 515 77 HOH HOH . R 7 HOH B 16 516 65 HOH HOH . R 7 HOH B 17 517 64 HOH HOH . R 7 HOH B 18 518 101 HOH HOH . R 7 HOH B 19 519 53 HOH HOH . R 7 HOH B 20 520 38 HOH HOH . R 7 HOH B 21 521 56 HOH HOH . R 7 HOH B 22 522 8 HOH HOH . R 7 HOH B 23 523 47 HOH HOH . R 7 HOH B 24 524 92 HOH HOH . R 7 HOH B 25 525 75 HOH HOH . R 7 HOH B 26 526 93 HOH HOH . R 7 HOH B 27 527 49 HOH HOH . R 7 HOH B 28 528 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 30.999 -92.823 -2.926 1 55.79 ? C1 EDO 705 A 1 HETATM 2 O O1 EDO . . . G 4 29.608 -92.696 -3.238 1 56.98 ? O1 EDO 705 A 1 HETATM 3 C C2 EDO . . . G 4 31.267 -94.289 -2.641 1 58.82 ? C2 EDO 705 A 1 HETATM 4 O O2 EDO . . . G 4 32.65 -94.583 -2.421 1 57.51 ? O2 EDO 705 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #