data_8VEP # _model_server_result.job_id QSl7wyOKpLacdud4njKf5A _model_server_result.datetime_utc '2024-11-23 04:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8VEP # _exptl.entry_id 8VEP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 519.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Piperacillin (Open Form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEP _cell.length_a 50.621 _cell.length_b 61.621 _cell.length_c 110.534 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 65 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 310 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C01 _struct_conn.ptnr2_label_comp_id JPP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id JPP _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.359 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H29 N5 O7 S' _chem_comp.formula_weight 519.571 _chem_comp.id JPP _chem_comp.mon_nstd_flag . _chem_comp.name 'Piperacillin (Open Form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C04 JPP doub 160 n n O01 C01 JPP doub 161 n n O02 C04 JPP sing 162 n n C04 C18 JPP sing 163 n n O04 C06 JPP doub 164 n n C01 C20 JPP sing 165 n n C18 N02 JPP sing 166 n n C18 C19 JPP sing 167 n n C07 C12 JPP doub 168 n y C07 C05 JPP sing 169 n y C12 C16 JPP sing 170 n y C09 C10 JPP sing 171 n n C09 N01 JPP sing 172 n n C03 C19 JPP sing 173 n n N02 C17 JPP sing 174 n n N03 C20 JPP sing 175 n n N03 C21 JPP sing 176 n n C06 N01 JPP sing 177 n n C06 N04 JPP sing 178 n n C10 N JPP sing 179 n n CA C05 JPP sing 180 n n CA C21 JPP sing 181 n n CA N04 JPP sing 182 n n C19 C02 JPP sing 183 n n C19 S JPP sing 184 n n C20 C17 JPP sing 185 n n C05 C08 JPP doub 186 n y N01 C11 JPP sing 187 n n C16 C13 JPP doub 188 n y C21 O06 JPP doub 189 n n C17 S JPP sing 190 n n C08 C13 JPP sing 191 n y N C15 JPP sing 192 n n N C14 JPP sing 193 n n C11 O05 JPP doub 194 n n C11 C14 JPP sing 195 n n C C15 JPP sing 196 n n C14 O JPP doub 197 n n O02 H1 JPP sing 198 n n N02 H2 JPP sing 199 n n N03 H4 JPP sing 200 n n N04 H5 JPP sing 201 n n C17 H6 JPP sing 202 n n C18 H7 JPP sing 203 n n C20 H8 JPP sing 204 n n C01 H9 JPP sing 205 n n C02 H10 JPP sing 206 n n C02 H11 JPP sing 207 n n C02 H12 JPP sing 208 n n C03 H13 JPP sing 209 n n C03 H14 JPP sing 210 n n C03 H15 JPP sing 211 n n CA H16 JPP sing 212 n n C07 H17 JPP sing 213 n n C08 H18 JPP sing 214 n n C09 H19 JPP sing 215 n n C09 H20 JPP sing 216 n n C10 H21 JPP sing 217 n n C10 H22 JPP sing 218 n n C12 H23 JPP sing 219 n n C13 H24 JPP sing 220 n n C15 H25 JPP sing 221 n n C15 H26 JPP sing 222 n n C16 H27 JPP sing 223 n n C H28 JPP sing 224 n n C H29 JPP sing 225 n n C H30 JPP sing 226 n n # _atom_sites.entry_id 8VEP _atom_sites.fract_transf_matrix[1][1] 0.019755 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JPP A 1 601 601 JPP PIP . C 3 PEG A 1 602 701 PEG PEG . D 4 HOH A 1 701 159 HOH HOH . D 4 HOH A 2 702 104 HOH HOH . D 4 HOH A 3 703 108 HOH HOH . D 4 HOH A 4 704 170 HOH HOH . D 4 HOH A 5 705 177 HOH HOH . D 4 HOH A 6 706 174 HOH HOH . D 4 HOH A 7 707 76 HOH HOH . D 4 HOH A 8 708 24 HOH HOH . D 4 HOH A 9 709 37 HOH HOH . D 4 HOH A 10 710 72 HOH HOH . D 4 HOH A 11 711 9 HOH HOH . D 4 HOH A 12 712 149 HOH HOH . D 4 HOH A 13 713 77 HOH HOH . D 4 HOH A 14 714 138 HOH HOH . D 4 HOH A 15 715 185 HOH HOH . D 4 HOH A 16 716 160 HOH HOH . D 4 HOH A 17 717 60 HOH HOH . D 4 HOH A 18 718 163 HOH HOH . D 4 HOH A 19 719 120 HOH HOH . D 4 HOH A 20 720 101 HOH HOH . D 4 HOH A 21 721 171 HOH HOH . D 4 HOH A 22 722 109 HOH HOH . D 4 HOH A 23 723 50 HOH HOH . D 4 HOH A 24 724 14 HOH HOH . D 4 HOH A 25 725 158 HOH HOH . D 4 HOH A 26 726 173 HOH HOH . D 4 HOH A 27 727 178 HOH HOH . D 4 HOH A 28 728 150 HOH HOH . D 4 HOH A 29 729 124 HOH HOH . D 4 HOH A 30 730 32 HOH HOH . D 4 HOH A 31 731 106 HOH HOH . D 4 HOH A 32 732 74 HOH HOH . D 4 HOH A 33 733 17 HOH HOH . D 4 HOH A 34 734 48 HOH HOH . D 4 HOH A 35 735 111 HOH HOH . D 4 HOH A 36 736 110 HOH HOH . D 4 HOH A 37 737 19 HOH HOH . D 4 HOH A 38 738 126 HOH HOH . D 4 HOH A 39 739 11 HOH HOH . D 4 HOH A 40 740 83 HOH HOH . D 4 HOH A 41 741 80 HOH HOH . D 4 HOH A 42 742 5 HOH HOH . D 4 HOH A 43 743 184 HOH HOH . D 4 HOH A 44 744 105 HOH HOH . D 4 HOH A 45 745 168 HOH HOH . D 4 HOH A 46 746 61 HOH HOH . D 4 HOH A 47 747 154 HOH HOH . D 4 HOH A 48 748 1 HOH HOH . D 4 HOH A 49 749 103 HOH HOH . D 4 HOH A 50 750 153 HOH HOH . D 4 HOH A 51 751 180 HOH HOH . D 4 HOH A 52 752 67 HOH HOH . D 4 HOH A 53 753 78 HOH HOH . D 4 HOH A 54 754 36 HOH HOH . D 4 HOH A 55 755 84 HOH HOH . D 4 HOH A 56 756 59 HOH HOH . D 4 HOH A 57 757 107 HOH HOH . D 4 HOH A 58 758 35 HOH HOH . D 4 HOH A 59 759 27 HOH HOH . D 4 HOH A 60 760 40 HOH HOH . D 4 HOH A 61 761 66 HOH HOH . D 4 HOH A 62 762 52 HOH HOH . D 4 HOH A 63 763 12 HOH HOH . D 4 HOH A 64 764 7 HOH HOH . D 4 HOH A 65 765 51 HOH HOH . D 4 HOH A 66 766 79 HOH HOH . D 4 HOH A 67 767 70 HOH HOH . D 4 HOH A 68 768 98 HOH HOH . D 4 HOH A 69 769 6 HOH HOH . D 4 HOH A 70 770 127 HOH HOH . D 4 HOH A 71 771 28 HOH HOH . D 4 HOH A 72 772 133 HOH HOH . D 4 HOH A 73 773 23 HOH HOH . D 4 HOH A 74 774 39 HOH HOH . D 4 HOH A 75 775 2 HOH HOH . D 4 HOH A 76 776 167 HOH HOH . D 4 HOH A 77 777 93 HOH HOH . D 4 HOH A 78 778 3 HOH HOH . D 4 HOH A 79 779 10 HOH HOH . D 4 HOH A 80 780 55 HOH HOH . D 4 HOH A 81 781 151 HOH HOH . D 4 HOH A 82 782 143 HOH HOH . D 4 HOH A 83 783 20 HOH HOH . D 4 HOH A 84 784 21 HOH HOH . D 4 HOH A 85 785 45 HOH HOH . D 4 HOH A 86 786 71 HOH HOH . D 4 HOH A 87 787 162 HOH HOH . D 4 HOH A 88 788 114 HOH HOH . D 4 HOH A 89 789 31 HOH HOH . D 4 HOH A 90 790 85 HOH HOH . D 4 HOH A 91 791 87 HOH HOH . D 4 HOH A 92 792 65 HOH HOH . D 4 HOH A 93 793 113 HOH HOH . D 4 HOH A 94 794 179 HOH HOH . D 4 HOH A 95 795 182 HOH HOH . D 4 HOH A 96 796 33 HOH HOH . D 4 HOH A 97 797 112 HOH HOH . D 4 HOH A 98 798 144 HOH HOH . D 4 HOH A 99 799 38 HOH HOH . D 4 HOH A 100 800 115 HOH HOH . D 4 HOH A 101 801 30 HOH HOH . D 4 HOH A 102 802 147 HOH HOH . D 4 HOH A 103 803 102 HOH HOH . D 4 HOH A 104 804 49 HOH HOH . D 4 HOH A 105 805 42 HOH HOH . D 4 HOH A 106 806 123 HOH HOH . D 4 HOH A 107 807 73 HOH HOH . D 4 HOH A 108 808 119 HOH HOH . D 4 HOH A 109 809 58 HOH HOH . D 4 HOH A 110 810 34 HOH HOH . D 4 HOH A 111 811 117 HOH HOH . D 4 HOH A 112 812 18 HOH HOH . D 4 HOH A 113 813 146 HOH HOH . D 4 HOH A 114 814 89 HOH HOH . D 4 HOH A 115 815 54 HOH HOH . D 4 HOH A 116 816 91 HOH HOH . D 4 HOH A 117 817 137 HOH HOH . D 4 HOH A 118 818 16 HOH HOH . D 4 HOH A 119 819 92 HOH HOH . D 4 HOH A 120 820 62 HOH HOH . D 4 HOH A 121 821 41 HOH HOH . D 4 HOH A 122 822 44 HOH HOH . D 4 HOH A 123 823 183 HOH HOH . D 4 HOH A 124 824 121 HOH HOH . D 4 HOH A 125 825 8 HOH HOH . D 4 HOH A 126 826 88 HOH HOH . D 4 HOH A 127 827 56 HOH HOH . D 4 HOH A 128 828 57 HOH HOH . D 4 HOH A 129 829 139 HOH HOH . D 4 HOH A 130 830 131 HOH HOH . D 4 HOH A 131 831 148 HOH HOH . D 4 HOH A 132 832 116 HOH HOH . D 4 HOH A 133 833 90 HOH HOH . D 4 HOH A 134 834 118 HOH HOH . D 4 HOH A 135 835 29 HOH HOH . D 4 HOH A 136 836 141 HOH HOH . D 4 HOH A 137 837 99 HOH HOH . D 4 HOH A 138 838 15 HOH HOH . D 4 HOH A 139 839 46 HOH HOH . D 4 HOH A 140 840 64 HOH HOH . D 4 HOH A 141 841 26 HOH HOH . D 4 HOH A 142 842 47 HOH HOH . D 4 HOH A 143 843 157 HOH HOH . D 4 HOH A 144 844 155 HOH HOH . D 4 HOH A 145 845 142 HOH HOH . D 4 HOH A 146 846 4 HOH HOH . D 4 HOH A 147 847 43 HOH HOH . D 4 HOH A 148 848 181 HOH HOH . D 4 HOH A 149 849 53 HOH HOH . D 4 HOH A 150 850 22 HOH HOH . D 4 HOH A 151 851 68 HOH HOH . D 4 HOH A 152 852 94 HOH HOH . D 4 HOH A 153 853 145 HOH HOH . D 4 HOH A 154 854 13 HOH HOH . D 4 HOH A 155 855 81 HOH HOH . D 4 HOH A 156 856 82 HOH HOH . D 4 HOH A 157 857 132 HOH HOH . D 4 HOH A 158 858 176 HOH HOH . D 4 HOH A 159 859 166 HOH HOH . D 4 HOH A 160 860 63 HOH HOH . D 4 HOH A 161 861 125 HOH HOH . D 4 HOH A 162 862 140 HOH HOH . D 4 HOH A 163 863 25 HOH HOH . D 4 HOH A 164 864 128 HOH HOH . D 4 HOH A 165 865 169 HOH HOH . D 4 HOH A 166 866 130 HOH HOH . D 4 HOH A 167 867 96 HOH HOH . D 4 HOH A 168 868 135 HOH HOH . D 4 HOH A 169 869 134 HOH HOH . D 4 HOH A 170 870 100 HOH HOH . D 4 HOH A 171 871 172 HOH HOH . D 4 HOH A 172 872 95 HOH HOH . D 4 HOH A 173 873 129 HOH HOH . D 4 HOH A 174 874 152 HOH HOH . D 4 HOH A 175 875 175 HOH HOH . D 4 HOH A 176 876 164 HOH HOH . D 4 HOH A 177 877 97 HOH HOH . D 4 HOH A 178 878 86 HOH HOH . D 4 HOH A 179 879 69 HOH HOH . D 4 HOH A 180 880 75 HOH HOH . D 4 HOH A 181 881 156 HOH HOH . D 4 HOH A 182 882 122 HOH HOH . D 4 HOH A 183 883 165 HOH HOH . D 4 HOH A 184 884 136 HOH HOH . D 4 HOH A 185 885 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S JPP . . . B 2 -7.851 5.103 22.89 1 25.2 0 S JPP 601 A 1 HETATM 2 O O01 JPP . . . B 2 -9.757 2.187 19.718 1 15.17 0 O01 JPP 601 A 1 HETATM 3 O O02 JPP . . . B 2 -6.077 0.632 22.645 1 20.55 -1 O02 JPP 601 A 1 HETATM 4 O O03 JPP . . . B 2 -5.187 1.956 20.965 1 23.81 0 O03 JPP 601 A 1 HETATM 5 O O06 JPP . . . B 2 -11.158 5.997 21.941 1 15.07 0 O06 JPP 601 A 1 HETATM 6 O O04 JPP . . . B 2 -15.045 3.344 23.081 1 17.43 0 O04 JPP 601 A 1 HETATM 7 O O05 JPP . . . B 2 -14.447 7.265 21.75 1 24.2 0 O05 JPP 601 A 1 HETATM 8 O O JPP . . . B 2 -16.475 8.703 21.107 1 21.93 0 O JPP 601 A 1 HETATM 9 N N02 JPP . . . B 2 -7.036 3.623 21.006 1 22.32 0 N02 JPP 601 A 1 HETATM 10 N N03 JPP . . . B 2 -10.367 3.885 21.584 1 15.98 0 N03 JPP 601 A 1 HETATM 11 N N04 JPP . . . B 2 -13.388 5.013 22.742 1 16.38 0 N04 JPP 601 A 1 HETATM 12 N N01 JPP . . . B 2 -15.727 5.449 22.296 1 19.8 0 N01 JPP 601 A 1 HETATM 13 N N JPP . . . B 2 -17.91 7.06 21.125 1 19.04 0 N JPP 601 A 1 HETATM 14 C C17 JPP . . . B 2 -8.031 4.924 21.447 1 21.34 0 C17 JPP 601 A 1 HETATM 15 C C19 JPP . . . B 2 -6.82 3.751 23.362 1 24.45 0 C19 JPP 601 A 1 HETATM 16 C C18 JPP . . . B 2 -7.079 2.748 22.134 1 23.51 0 C18 JPP 601 A 1 HETATM 17 C C20 JPP . . . B 2 -9.403 4.418 20.725 1 18.06 0 C20 JPP 601 A 1 HETATM 18 C C01 JPP . . . B 2 -9.238 3.295 19.666 1 16.82 0 C01 JPP 601 A 1 HETATM 19 C C02 JPP . . . B 2 -5.305 4.216 23.413 1 25.22 0 C02 JPP 601 A 1 HETATM 20 C C03 JPP . . . B 2 -7.177 3.066 24.662 1 24.93 0 C03 JPP 601 A 1 HETATM 21 C C04 JPP . . . B 2 -6.029 1.738 21.872 1 24.3 0 C04 JPP 601 A 1 HETATM 22 C C21 JPP . . . B 2 -11.263 4.82 22.174 1 16.22 0 C21 JPP 601 A 1 HETATM 23 C CA JPP . . . B 2 -12.309 4.182 23.054 1 17.99 0 CA JPP 601 A 1 HETATM 24 C C05 JPP . . . B 2 -11.897 4.095 24.518 1 18.76 0 C05 JPP 601 A 1 HETATM 25 C C06 JPP . . . B 2 -14.716 4.497 22.721 1 17.67 0 C06 JPP 601 A 1 HETATM 26 C C07 JPP . . . B 2 -11.843 2.867 25.076 1 21.9 0 C07 JPP 601 A 1 HETATM 27 C C08 JPP . . . B 2 -11.611 5.206 25.235 1 22.81 0 C08 JPP 601 A 1 HETATM 28 C C09 JPP . . . B 2 -17.211 4.972 22.34 1 21.24 0 C09 JPP 601 A 1 HETATM 29 C C10 JPP . . . B 2 -17.891 5.459 21.35 1 21.52 0 C10 JPP 601 A 1 HETATM 30 C C11 JPP . . . B 2 -15.542 6.704 21.828 1 21.51 0 C11 JPP 601 A 1 HETATM 31 C C12 JPP . . . B 2 -11.472 2.71 26.413 1 23.25 0 C12 JPP 601 A 1 HETATM 32 C C13 JPP . . . B 2 -11.243 5.065 26.584 1 24.47 0 C13 JPP 601 A 1 HETATM 33 C C14 JPP . . . B 2 -16.725 7.566 21.305 1 20.95 0 C14 JPP 601 A 1 HETATM 34 C C15 JPP . . . B 2 -19.12 7.749 20.629 1 18.53 0 C15 JPP 601 A 1 HETATM 35 C C16 JPP . . . B 2 -11.16 3.838 27.155 1 22.92 0 C16 JPP 601 A 1 HETATM 36 C C JPP . . . B 2 -19.251 7.19 19.183 1 16.97 0 C JPP 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #