data_8VEQ # _model_server_result.job_id 5b6zVLcbYYAQJOQdzDs7zw _model_server_result.datetime_utc '2024-10-25 20:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8veq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8VEQ # _exptl.entry_id 8VEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.507 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-5,5-dimethyl-2-[(1R)-2-oxo-1-{[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}ethyl]-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEQ _cell.length_a 50.59 _cell.length_b 61.344 _cell.length_c 109.565 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 65 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 310 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id 59H _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 59H _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.367 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H25 N5 O6 S' _chem_comp.formula_weight 463.507 _chem_comp.id 59H _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-5,5-dimethyl-2-[(1R)-2-oxo-1-{[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}ethyl]-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 59H doub 1 n n O1 C1 59H doub 2 n n C3 OXT 59H sing 3 n n C3 CA3 59H sing 4 n n OX1 CX7 59H doub 5 n n CA3 N3 59H sing 6 n n CA3 CXC 59H sing 7 n n C1 CA1 59H sing 8 n n CX6 CX5 59H doub 9 n y CX6 CX1 59H sing 10 n y CX8 NX1 59H sing 11 n n CX8 CX9 59H sing 12 n n CX5 CX4 59H sing 13 n y N3 CXD 59H sing 14 n n CX7 NX1 59H sing 15 n n CX7 N 59H sing 16 n n N1 CA1 59H sing 17 n n N1 C 59H sing 18 n n CXB CXC 59H sing 19 n n CA CX1 59H sing 20 n n CA N 59H sing 21 n n CA C 59H sing 22 n n CX1 CX2 59H doub 23 n y CXC CXE 59H sing 24 n n CXC S4 59H sing 25 n n CA1 CXD 59H sing 26 n n NX1 CXA 59H sing 27 n n CX4 CX3 59H doub 28 n y C O 59H doub 29 n n CX9 NX2 59H sing 30 n n CXD S4 59H sing 31 n n CX2 CX3 59H sing 32 n y CXA NX2 59H sing 33 n n CXA OX2 59H doub 34 n n N1 H1 59H sing 35 n n N H2 59H sing 36 n n CA H3 59H sing 37 n n CX2 H4 59H sing 38 n n CX3 H5 59H sing 39 n n CX4 H6 59H sing 40 n n CX5 H7 59H sing 41 n n CX6 H8 59H sing 42 n n CX8 H9 59H sing 43 n n CX8 H10 59H sing 44 n n CX9 H11 59H sing 45 n n CX9 H12 59H sing 46 n n NX2 H13 59H sing 47 n n CA1 H14 59H sing 48 n n C1 H15 59H sing 49 n n N3 H16 59H sing 50 n n CA3 H18 59H sing 51 n n OXT H19 59H sing 52 n n CXB H20 59H sing 53 n n CXB H21 59H sing 54 n n CXB H22 59H sing 55 n n CXD H23 59H sing 56 n n CXE H24 59H sing 57 n n CXE H25 59H sing 58 n n CXE H26 59H sing 59 n n # _atom_sites.entry_id 8VEQ _atom_sites.fract_transf_matrix[1][1] 0.019767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 59H A 1 601 601 59H 59H . C 3 HOH A 1 701 44 HOH HOH . C 3 HOH A 2 702 12 HOH HOH . C 3 HOH A 3 703 47 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 40 HOH HOH . C 3 HOH A 6 706 35 HOH HOH . C 3 HOH A 7 707 22 HOH HOH . C 3 HOH A 8 708 46 HOH HOH . C 3 HOH A 9 709 23 HOH HOH . C 3 HOH A 10 710 10 HOH HOH . C 3 HOH A 11 711 7 HOH HOH . C 3 HOH A 12 712 20 HOH HOH . C 3 HOH A 13 713 31 HOH HOH . C 3 HOH A 14 714 18 HOH HOH . C 3 HOH A 15 715 34 HOH HOH . C 3 HOH A 16 716 5 HOH HOH . C 3 HOH A 17 717 42 HOH HOH . C 3 HOH A 18 718 14 HOH HOH . C 3 HOH A 19 719 39 HOH HOH . C 3 HOH A 20 720 11 HOH HOH . C 3 HOH A 21 721 24 HOH HOH . C 3 HOH A 22 722 48 HOH HOH . C 3 HOH A 23 723 32 HOH HOH . C 3 HOH A 24 724 8 HOH HOH . C 3 HOH A 25 725 16 HOH HOH . C 3 HOH A 26 726 1 HOH HOH . C 3 HOH A 27 727 2 HOH HOH . C 3 HOH A 28 728 38 HOH HOH . C 3 HOH A 29 729 19 HOH HOH . C 3 HOH A 30 730 30 HOH HOH . C 3 HOH A 31 731 41 HOH HOH . C 3 HOH A 32 732 21 HOH HOH . C 3 HOH A 33 733 9 HOH HOH . C 3 HOH A 34 734 43 HOH HOH . C 3 HOH A 35 735 13 HOH HOH . C 3 HOH A 36 736 3 HOH HOH . C 3 HOH A 37 737 28 HOH HOH . C 3 HOH A 38 738 26 HOH HOH . C 3 HOH A 39 739 36 HOH HOH . C 3 HOH A 40 740 6 HOH HOH . C 3 HOH A 41 741 33 HOH HOH . C 3 HOH A 42 742 37 HOH HOH . C 3 HOH A 43 743 15 HOH HOH . C 3 HOH A 44 744 45 HOH HOH . C 3 HOH A 45 745 27 HOH HOH . C 3 HOH A 46 746 17 HOH HOH . C 3 HOH A 47 747 29 HOH HOH . C 3 HOH A 48 748 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 59H . . . B 2 -10.525 3.984 21.75 1 24.48 ? N1 59H 601 A 1 HETATM 2 C C3 59H . . . B 2 -6.266 1.429 22.293 1 34.06 ? C3 59H 601 A 1 HETATM 3 N N 59H . . . B 2 -13.767 5.017 22.78 1 20.27 ? N 59H 601 A 1 HETATM 4 C CA 59H . . . B 2 -12.589 4.218 23.038 1 21.14 ? CA 59H 601 A 1 HETATM 5 C C 59H . . . B 2 -11.503 4.815 22.129 1 22.35 ? C 59H 601 A 1 HETATM 6 O O 59H . . . B 2 -11.532 5.998 21.805 1 22.78 ? O 59H 601 A 1 HETATM 7 C CX1 59H . . . B 2 -12.2 4.177 24.509 1 21.86 ? CX1 59H 601 A 1 HETATM 8 C CX2 59H . . . B 2 -12.025 2.964 25.167 1 21.77 ? CX2 59H 601 A 1 HETATM 9 C CX3 59H . . . B 2 -11.636 2.923 26.501 1 21.94 ? CX3 59H 601 A 1 HETATM 10 C CX4 59H . . . B 2 -11.432 4.097 27.202 1 22.23 ? CX4 59H 601 A 1 HETATM 11 C CX5 59H . . . B 2 -11.61 5.309 26.569 1 22.48 ? CX5 59H 601 A 1 HETATM 12 C CX6 59H . . . B 2 -11.996 5.351 25.232 1 22.55 ? CX6 59H 601 A 1 HETATM 13 C CX7 59H . . . B 2 -14.992 4.483 22.627 1 19.41 ? CX7 59H 601 A 1 HETATM 14 O OX1 59H . . . B 2 -15.2 3.284 22.826 1 19.51 ? OX1 59H 601 A 1 HETATM 15 N NX1 59H . . . B 2 -16.008 5.361 22.184 1 18.96 ? NX1 59H 601 A 1 HETATM 16 C CX8 59H . . . B 2 -17.261 4.707 21.791 1 19.41 ? CX8 59H 601 A 1 HETATM 17 C CX9 59H . . . B 2 -18.061 5.845 21.206 1 19.27 ? CX9 59H 601 A 1 HETATM 18 N NX2 59H . . . B 2 -17.199 7.018 21.24 1 18.44 ? NX2 59H 601 A 1 HETATM 19 C CXA 59H . . . B 2 -15.965 6.676 21.689 1 19.13 ? CXA 59H 601 A 1 HETATM 20 O OX2 59H . . . B 2 -14.936 7.335 21.529 1 19.38 ? OX2 59H 601 A 1 HETATM 21 C CA1 59H . . . B 2 -9.538 4.36 20.74 1 26.86 ? CA1 59H 601 A 1 HETATM 22 C C1 59H . . . B 2 -9.649 3.384 19.554 1 25.07 ? C1 59H 601 A 1 HETATM 23 O O1 59H . . . B 2 -9.717 2.202 19.704 1 24 ? O1 59H 601 A 1 HETATM 24 N N3 59H . . . B 2 -7.285 3.299 21.063 1 31.29 ? N3 59H 601 A 1 HETATM 25 C CA3 59H . . . B 2 -7.224 2.631 22.37 1 33.37 ? CA3 59H 601 A 1 HETATM 26 O O3 59H . . . B 2 -6.561 0.422 22.982 1 33.59 ? O3 59H 601 A 1 HETATM 27 O OXT 59H . . . B 2 -5.284 1.537 21.516 1 32.29 ? OXT 59H 601 A 1 HETATM 28 C CXB 59H . . . B 2 -7.081 3.345 24.811 1 34.63 ? CXB 59H 601 A 1 HETATM 29 C CXC 59H . . . B 2 -6.79 3.737 23.37 1 33.4 ? CXC 59H 601 A 1 HETATM 30 C CXD 59H . . . B 2 -8.056 4.551 21.173 1 30.88 ? CXD 59H 601 A 1 HETATM 31 S S4 59H . . . B 2 -7.849 5.175 22.89 1 33.75 ? S4 59H 601 A 1 HETATM 32 C CXE 59H . . . B 2 -5.343 4.196 23.242 1 34.25 ? CXE 59H 601 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #