data_8VET # _model_server_result.job_id 0-G5nlyRH-288mIaU_AksA _model_server_result.datetime_utc '2024-11-08 13:37:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vet # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8VET # _exptl.entry_id 8VET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VET _cell.length_a 103.19 _cell.length_b 137.03 _cell.length_c 178.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VET _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 294 n n CS HCS1 MTA sing 295 n n CS HCS2 MTA sing 296 n n CS HCS3 MTA sing 297 n n S5' C5' MTA sing 298 n n C5' C4' MTA sing 299 n n C5' "H5'1" MTA sing 300 n n C5' "H5'2" MTA sing 301 n n C4' O4' MTA sing 302 n n C4' C3' MTA sing 303 n n C4' H4' MTA sing 304 n n O4' C1' MTA sing 305 n n C2' O2' MTA sing 306 n n C2' C3' MTA sing 307 n n C2' C1' MTA sing 308 n n C2' H2' MTA sing 309 n n O2' HO2' MTA sing 310 n n C3' O3' MTA sing 311 n n C3' H3' MTA sing 312 n n O3' H3T MTA sing 313 n n C1' N9 MTA sing 314 n n C1' H1' MTA sing 315 n n N9 C8 MTA sing 316 n y N9 C4 MTA sing 317 n y C8 N7 MTA doub 318 n y C8 H8 MTA sing 319 n n N7 C5 MTA sing 320 n y C5 C6 MTA sing 321 n y C5 C4 MTA doub 322 n y C6 N6 MTA sing 323 n n C6 N1 MTA doub 324 n y N6 H61 MTA sing 325 n n N6 H62 MTA sing 326 n n N1 C2 MTA sing 327 n y C2 N3 MTA doub 328 n y C2 H2 MTA sing 329 n n N3 C4 MTA sing 330 n y # _atom_sites.entry_id 8VET _atom_sites.fract_transf_matrix[1][1] 0.009691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1AAS A 1 702 1 A1AAS LIG . E 5 EDO A 1 703 1 EDO EDO . F 6 CL A 1 704 1 CL CL . G 7 HOH A 1 801 8 HOH HOH . G 7 HOH A 2 802 9 HOH HOH . G 7 HOH A 3 803 22 HOH HOH . G 7 HOH A 4 804 26 HOH HOH . G 7 HOH A 5 805 10 HOH HOH . G 7 HOH A 6 806 11 HOH HOH . G 7 HOH A 7 807 13 HOH HOH . G 7 HOH A 8 808 15 HOH HOH . G 7 HOH A 9 809 18 HOH HOH . G 7 HOH A 10 810 7 HOH HOH . G 7 HOH A 11 811 6 HOH HOH . G 7 HOH A 12 812 28 HOH HOH . G 7 HOH A 13 813 5 HOH HOH . G 7 HOH A 14 814 2 HOH HOH . G 7 HOH A 15 815 1 HOH HOH . G 7 HOH A 16 816 24 HOH HOH . G 7 HOH A 17 817 25 HOH HOH . G 7 HOH A 18 818 29 HOH HOH . G 7 HOH A 19 819 16 HOH HOH . G 7 HOH A 20 820 21 HOH HOH . G 7 HOH A 21 821 17 HOH HOH . G 7 HOH A 22 822 27 HOH HOH . H 7 HOH B 1 401 3 HOH HOH . H 7 HOH B 2 402 4 HOH HOH . H 7 HOH B 3 403 19 HOH HOH . H 7 HOH B 4 404 12 HOH HOH . H 7 HOH B 5 405 14 HOH HOH . H 7 HOH B 6 406 23 HOH HOH . H 7 HOH B 7 407 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . C 3 19.836 -40.887 -7.103 1 71.56 ? CS MTA 701 A 1 HETATM 2 S S5' MTA . . . C 3 20.406 -39.339 -6.504 1 70.77 ? S5' MTA 701 A 1 HETATM 3 C C5' MTA . . . C 3 18.818 -38.713 -6.08 1 68.39 ? C5' MTA 701 A 1 HETATM 4 C C4' MTA . . . C 3 18.949 -37.783 -4.885 1 66.98 ? C4' MTA 701 A 1 HETATM 5 O O4' MTA . . . C 3 17.894 -36.823 -4.891 1 65.1 ? O4' MTA 701 A 1 HETATM 6 C C2' MTA . . . C 3 17.498 -38.148 -3.007 1 65.63 ? C2' MTA 701 A 1 HETATM 7 O O2' MTA . . . C 3 17.458 -38.142 -1.575 1 66.01 ? O2' MTA 701 A 1 HETATM 8 C C3' MTA . . . C 3 18.861 -38.52 -3.558 1 66.33 ? C3' MTA 701 A 1 HETATM 9 O O3' MTA . . . C 3 19.916 -38.05 -2.717 1 66.67 ? O3' MTA 701 A 1 HETATM 10 C C1' MTA . . . C 3 17.293 -36.765 -3.6 1 64.75 ? C1' MTA 701 A 1 HETATM 11 N N9 MTA . . . C 3 15.88 -36.375 -3.769 1 64.44 ? N9 MTA 701 A 1 HETATM 12 C C8 MTA . . . C 3 14.942 -37.066 -4.442 1 64.73 ? C8 MTA 701 A 1 HETATM 13 N N7 MTA . . . C 3 13.755 -36.412 -4.412 1 63.98 ? N7 MTA 701 A 1 HETATM 14 C C5 MTA . . . C 3 13.938 -35.281 -3.716 1 64.05 ? C5 MTA 701 A 1 HETATM 15 C C6 MTA . . . C 3 13.096 -34.14 -3.309 1 64.64 ? C6 MTA 701 A 1 HETATM 16 N N6 MTA . . . C 3 11.794 -34.101 -3.665 1 65.22 ? N6 MTA 701 A 1 HETATM 17 N N1 MTA . . . C 3 13.675 -33.152 -2.587 1 65.02 ? N1 MTA 701 A 1 HETATM 18 C C2 MTA . . . C 3 14.976 -33.188 -2.23 1 65.32 ? C2 MTA 701 A 1 HETATM 19 N N3 MTA . . . C 3 15.796 -34.203 -2.569 1 64.79 ? N3 MTA 701 A 1 HETATM 20 C C4 MTA . . . C 3 15.344 -35.254 -3.297 1 64.28 ? C4 MTA 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #