data_8VET # _model_server_result.job_id Ub2PTkJZ0xV3weHZ0cN8qw _model_server_result.datetime_utc '2024-11-08 13:46:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vet # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 8VET # _exptl.entry_id 8VET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.393 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5-methylpyridin-3-yl)-2-[(2R)-2-(1-methyl-1H-pyrrol-2-yl)piperidin-1-yl]-2-oxoacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VET _cell.length_a 103.19 _cell.length_b 137.03 _cell.length_c 178.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VET _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H22 N4 O2' _chem_comp.formula_weight 326.393 _chem_comp.id A1AAS _chem_comp.mon_nstd_flag . _chem_comp.name N-(5-methylpyridin-3-yl)-2-[(2R)-2-(1-methyl-1H-pyrrol-2-yl)piperidin-1-yl]-2-oxoacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C9 A1AAS doub 1 n n C21 N20 A1AAS sing 2 n n C9 C8 A1AAS sing 3 n n C9 N10 A1AAS sing 4 n n N20 C19 A1AAS sing 5 n y N20 C16 A1AAS sing 6 n y N7 C8 A1AAS sing 7 n n N7 C5 A1AAS sing 8 n n C8 O22 A1AAS doub 9 n n C19 C18 A1AAS doub 10 n y C6 C5 A1AAS doub 11 n y C6 C1 A1AAS sing 12 n y C5 C4 A1AAS sing 13 n y C24 C1 A1AAS sing 14 n n C1 C2 A1AAS doub 15 n y C4 N3 A1AAS doub 16 n y C11 C16 A1AAS sing 17 n n C11 N10 A1AAS sing 18 n n C11 C12 A1AAS sing 19 n n C16 C17 A1AAS doub 20 n y C2 N3 A1AAS sing 21 n y N10 C15 A1AAS sing 22 n n C18 C17 A1AAS sing 23 n y C12 C13 A1AAS sing 24 n n C15 C14 A1AAS sing 25 n n C13 C14 A1AAS sing 26 n n C4 H1 A1AAS sing 27 n n C6 H2 A1AAS sing 28 n n C13 H3 A1AAS sing 29 n n C13 H4 A1AAS sing 30 n n C15 H5 A1AAS sing 31 n n C15 H6 A1AAS sing 32 n n C17 H7 A1AAS sing 33 n n C21 H8 A1AAS sing 34 n n C21 H9 A1AAS sing 35 n n C21 H10 A1AAS sing 36 n n C24 H11 A1AAS sing 37 n n C24 H12 A1AAS sing 38 n n C24 H13 A1AAS sing 39 n n C2 H14 A1AAS sing 40 n n N7 H15 A1AAS sing 41 n n C11 H16 A1AAS sing 42 n n C12 H17 A1AAS sing 43 n n C12 H18 A1AAS sing 44 n n C14 H19 A1AAS sing 45 n n C14 H20 A1AAS sing 46 n n C18 H21 A1AAS sing 47 n n C19 H22 A1AAS sing 48 n n # _atom_sites.entry_id 8VET _atom_sites.fract_transf_matrix[1][1] 0.009691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1AAS A 1 702 1 A1AAS LIG . E 5 EDO A 1 703 1 EDO EDO . F 6 CL A 1 704 1 CL CL . G 7 HOH A 1 801 8 HOH HOH . G 7 HOH A 2 802 9 HOH HOH . G 7 HOH A 3 803 22 HOH HOH . G 7 HOH A 4 804 26 HOH HOH . G 7 HOH A 5 805 10 HOH HOH . G 7 HOH A 6 806 11 HOH HOH . G 7 HOH A 7 807 13 HOH HOH . G 7 HOH A 8 808 15 HOH HOH . G 7 HOH A 9 809 18 HOH HOH . G 7 HOH A 10 810 7 HOH HOH . G 7 HOH A 11 811 6 HOH HOH . G 7 HOH A 12 812 28 HOH HOH . G 7 HOH A 13 813 5 HOH HOH . G 7 HOH A 14 814 2 HOH HOH . G 7 HOH A 15 815 1 HOH HOH . G 7 HOH A 16 816 24 HOH HOH . G 7 HOH A 17 817 25 HOH HOH . G 7 HOH A 18 818 29 HOH HOH . G 7 HOH A 19 819 16 HOH HOH . G 7 HOH A 20 820 21 HOH HOH . G 7 HOH A 21 821 17 HOH HOH . G 7 HOH A 22 822 27 HOH HOH . H 7 HOH B 1 401 3 HOH HOH . H 7 HOH B 2 402 4 HOH HOH . H 7 HOH B 3 403 19 HOH HOH . H 7 HOH B 4 404 12 HOH HOH . H 7 HOH B 5 405 14 HOH HOH . H 7 HOH B 6 406 23 HOH HOH . H 7 HOH B 7 407 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 A1AAS . . . D 4 19.322 -43.256 -10.015 1 71.99 ? N3 A1AAS 702 A 1 HETATM 2 C C4 A1AAS . . . D 4 19.724 -44.491 -10.221 1 74.22 ? C4 A1AAS 702 A 1 HETATM 3 C C5 A1AAS . . . D 4 21.06 -44.786 -10.503 1 75.96 ? C5 A1AAS 702 A 1 HETATM 4 C C6 A1AAS . . . D 4 21.957 -43.714 -10.565 1 74.31 ? C6 A1AAS 702 A 1 HETATM 5 C C8 A1AAS . . . D 4 20.728 -47.198 -10.627 1 81.39 ? C8 A1AAS 702 A 1 HETATM 6 C C13 A1AAS . . . D 4 21.907 -51.093 -7.665 1 94.64 ? C13 A1AAS 702 A 1 HETATM 7 C C15 A1AAS . . . D 4 21.884 -48.771 -8.499 1 93.12 ? C15 A1AAS 702 A 1 HETATM 8 C C17 A1AAS . . . D 4 24.618 -51.584 -9.416 1 98.21 ? C17 A1AAS 702 A 1 HETATM 9 C C21 A1AAS . . . D 4 24.345 -48.871 -11.799 1 98.51 ? C21 A1AAS 702 A 1 HETATM 10 C C24 A1AAS . . . D 4 22.401 -41.244 -10.389 1 73.32 ? C24 A1AAS 702 A 1 HETATM 11 C C1 A1AAS . . . D 4 21.48 -42.429 -10.339 1 73.27 ? C1 A1AAS 702 A 1 HETATM 12 C C2 A1AAS . . . D 4 20.142 -42.235 -10.067 1 72.1 ? C2 A1AAS 702 A 1 HETATM 13 N N7 A1AAS . . . D 4 21.521 -46.1 -10.731 1 78.06 ? N7 A1AAS 702 A 1 HETATM 14 C C9 A1AAS . . . D 4 21.261 -48.561 -10.881 1 85.97 ? C9 A1AAS 702 A 1 HETATM 15 N N10 A1AAS . . . D 4 21.805 -49.299 -9.878 1 91.78 ? N10 A1AAS 702 A 1 HETATM 16 C C11 A1AAS . . . D 4 22.319 -50.665 -10.138 1 95.09 ? C11 A1AAS 702 A 1 HETATM 17 C C12 A1AAS . . . D 4 21.721 -51.618 -9.091 1 95.21 ? C12 A1AAS 702 A 1 HETATM 18 C C14 A1AAS . . . D 4 21.179 -49.759 -7.559 1 93.91 ? C14 A1AAS 702 A 1 HETATM 19 C C16 A1AAS . . . D 4 23.835 -50.728 -10.127 1 97.5 ? C16 A1AAS 702 A 1 HETATM 20 C C18 A1AAS . . . D 4 25.961 -51.3 -9.716 1 98.91 ? C18 A1AAS 702 A 1 HETATM 21 C C19 A1AAS . . . D 4 25.951 -50.293 -10.604 1 99.83 ? C19 A1AAS 702 A 1 HETATM 22 N N20 A1AAS . . . D 4 24.672 -49.944 -10.866 1 98.52 ? N20 A1AAS 702 A 1 HETATM 23 O O22 A1AAS . . . D 4 19.558 -47.139 -10.322 1 80.71 ? O22 A1AAS 702 A 1 HETATM 24 O O23 A1AAS . . . D 4 21.178 -48.993 -12.014 1 85.63 ? O23 A1AAS 702 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #