data_8VEU # _model_server_result.job_id GvEkOLp_pA1Px0nRJVWxJg _model_server_result.datetime_utc '2024-12-23 04:59:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8veu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 8VEU # _exptl.entry_id 8VEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.43 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(6-amino-5-methylpyridin-3-yl)-2-[(2R,5S)-5-methyl-2-phenylpiperidin-1-yl]-2-oxoacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEU _cell.length_a 103.37 _cell.length_b 138.79 _cell.length_c 179.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H24 N4 O2' _chem_comp.formula_weight 352.43 _chem_comp.id A1AAT _chem_comp.mon_nstd_flag . _chem_comp.name N-(6-amino-5-methylpyridin-3-yl)-2-[(2R,5S)-5-methyl-2-phenylpiperidin-1-yl]-2-oxoacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C8 A1AAT doub 1 n n C1 C2 A1AAT sing 2 n n C8 C10 A1AAT sing 3 n n C8 N6 A1AAT sing 4 n n C7 C2 A1AAT sing 5 n n C7 N6 A1AAT sing 6 n n N12 C10 A1AAT sing 7 n n N12 C13 A1AAT sing 8 n n C10 O11 A1AAT doub 9 n n C2 C3 A1AAT sing 10 n n C13 C20 A1AAT doub 11 n y C13 C14 A1AAT sing 12 n y C20 C18 A1AAT sing 13 n y N6 C5 A1AAT sing 14 n n C14 N15 A1AAT doub 15 n y C18 C19 A1AAT sing 16 n n C18 C16 A1AAT doub 17 n y N15 C16 A1AAT sing 18 n y C16 N17 A1AAT sing 19 n n C3 C4 A1AAT sing 20 n n C5 C4 A1AAT sing 21 n n C5 C21 A1AAT sing 22 n n C26 C21 A1AAT doub 23 n y C26 C25 A1AAT sing 24 n y C21 C22 A1AAT sing 25 n y C25 C24 A1AAT doub 26 n y C22 C23 A1AAT doub 27 n y C24 C23 A1AAT sing 28 n y C4 H1 A1AAT sing 29 n n C4 H2 A1AAT sing 30 n n C5 H3 A1AAT sing 31 n n C7 H4 A1AAT sing 32 n n C7 H5 A1AAT sing 33 n n N12 H6 A1AAT sing 34 n n C20 H7 A1AAT sing 35 n n C22 H8 A1AAT sing 36 n n C24 H9 A1AAT sing 37 n n C26 H10 A1AAT sing 38 n n C1 H11 A1AAT sing 39 n n C1 H12 A1AAT sing 40 n n C1 H13 A1AAT sing 41 n n C2 H14 A1AAT sing 42 n n C3 H15 A1AAT sing 43 n n C3 H16 A1AAT sing 44 n n C14 H17 A1AAT sing 45 n n N17 H18 A1AAT sing 46 n n N17 H19 A1AAT sing 47 n n C19 H20 A1AAT sing 48 n n C19 H21 A1AAT sing 49 n n C19 H22 A1AAT sing 50 n n C23 H23 A1AAT sing 51 n n C25 H24 A1AAT sing 52 n n # _atom_sites.entry_id 8VEU _atom_sites.fract_transf_matrix[1][1] 0.009674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1AAT A 1 702 1 A1AAT LIG . E 5 EDO A 1 703 1 EDO EDO . F 5 EDO A 1 704 2 EDO EDO . G 5 EDO A 1 705 4 EDO EDO . H 5 EDO A 1 706 6 EDO EDO . I 5 EDO A 1 707 7 EDO EDO . J 5 EDO A 1 708 8 EDO EDO . K 5 EDO A 1 709 9 EDO EDO . L 5 EDO A 1 710 10 EDO EDO . M 5 EDO A 1 711 11 EDO EDO . N 5 EDO A 1 712 12 EDO EDO . O 5 EDO A 1 713 13 EDO EDO . P 5 EDO A 1 714 14 EDO EDO . Q 5 EDO A 1 715 15 EDO EDO . R 5 EDO A 1 716 16 EDO EDO . S 5 EDO A 1 717 17 EDO EDO . T 5 EDO A 1 718 18 EDO EDO . U 5 EDO A 1 719 19 EDO EDO . V 5 EDO B 1 401 3 EDO EDO . W 5 EDO B 1 402 5 EDO EDO . X 5 EDO B 1 403 20 EDO EDO . Y 6 HOH A 1 801 89 HOH HOH . Y 6 HOH A 2 802 32 HOH HOH . Y 6 HOH A 3 803 38 HOH HOH . Y 6 HOH A 4 804 12 HOH HOH . Y 6 HOH A 5 805 2 HOH HOH . Y 6 HOH A 6 806 17 HOH HOH . Y 6 HOH A 7 807 15 HOH HOH . Y 6 HOH A 8 808 37 HOH HOH . Y 6 HOH A 9 809 54 HOH HOH . Y 6 HOH A 10 810 52 HOH HOH . Y 6 HOH A 11 811 11 HOH HOH . Y 6 HOH A 12 812 39 HOH HOH . Y 6 HOH A 13 813 87 HOH HOH . Y 6 HOH A 14 814 78 HOH HOH . Y 6 HOH A 15 815 69 HOH HOH . Y 6 HOH A 16 816 20 HOH HOH . Y 6 HOH A 17 817 81 HOH HOH . Y 6 HOH A 18 818 85 HOH HOH . Y 6 HOH A 19 819 9 HOH HOH . Y 6 HOH A 20 820 4 HOH HOH . Y 6 HOH A 21 821 14 HOH HOH . Y 6 HOH A 22 822 43 HOH HOH . Y 6 HOH A 23 823 40 HOH HOH . Y 6 HOH A 24 824 76 HOH HOH . Y 6 HOH A 25 825 92 HOH HOH . Y 6 HOH A 26 826 28 HOH HOH . Y 6 HOH A 27 827 50 HOH HOH . Y 6 HOH A 28 828 72 HOH HOH . Y 6 HOH A 29 829 58 HOH HOH . Y 6 HOH A 30 830 33 HOH HOH . Y 6 HOH A 31 831 55 HOH HOH . Y 6 HOH A 32 832 23 HOH HOH . Y 6 HOH A 33 833 59 HOH HOH . Y 6 HOH A 34 834 86 HOH HOH . Y 6 HOH A 35 835 18 HOH HOH . Y 6 HOH A 36 836 51 HOH HOH . Y 6 HOH A 37 837 16 HOH HOH . Y 6 HOH A 38 838 70 HOH HOH . Y 6 HOH A 39 839 62 HOH HOH . Y 6 HOH A 40 840 75 HOH HOH . Y 6 HOH A 41 841 71 HOH HOH . Y 6 HOH A 42 842 6 HOH HOH . Y 6 HOH A 43 843 34 HOH HOH . Y 6 HOH A 44 844 5 HOH HOH . Y 6 HOH A 45 845 53 HOH HOH . Y 6 HOH A 46 846 48 HOH HOH . Y 6 HOH A 47 847 79 HOH HOH . Y 6 HOH A 48 848 44 HOH HOH . Y 6 HOH A 49 849 61 HOH HOH . Y 6 HOH A 50 850 10 HOH HOH . Y 6 HOH A 51 851 65 HOH HOH . Y 6 HOH A 52 852 57 HOH HOH . Y 6 HOH A 53 853 21 HOH HOH . Y 6 HOH A 54 854 29 HOH HOH . Y 6 HOH A 55 855 19 HOH HOH . Y 6 HOH A 56 856 41 HOH HOH . Y 6 HOH A 57 857 63 HOH HOH . Y 6 HOH A 58 858 7 HOH HOH . Y 6 HOH A 59 859 84 HOH HOH . Y 6 HOH A 60 860 35 HOH HOH . Y 6 HOH A 61 861 83 HOH HOH . Y 6 HOH A 62 862 24 HOH HOH . Y 6 HOH A 63 863 1 HOH HOH . Y 6 HOH A 64 864 56 HOH HOH . Y 6 HOH A 65 865 90 HOH HOH . Y 6 HOH A 66 866 91 HOH HOH . Y 6 HOH A 67 867 77 HOH HOH . Y 6 HOH A 68 868 47 HOH HOH . Y 6 HOH A 69 869 93 HOH HOH . Y 6 HOH A 70 870 64 HOH HOH . Y 6 HOH A 71 871 36 HOH HOH . Y 6 HOH A 72 872 88 HOH HOH . Y 6 HOH A 73 873 66 HOH HOH . Y 6 HOH A 74 874 74 HOH HOH . Y 6 HOH A 75 875 3 HOH HOH . Y 6 HOH A 76 876 8 HOH HOH . Y 6 HOH A 77 877 13 HOH HOH . Y 6 HOH A 78 878 67 HOH HOH . Y 6 HOH A 79 879 80 HOH HOH . Y 6 HOH A 80 880 73 HOH HOH . Y 6 HOH A 81 881 30 HOH HOH . Z 6 HOH B 1 501 22 HOH HOH . Z 6 HOH B 2 502 42 HOH HOH . Z 6 HOH B 3 503 31 HOH HOH . Z 6 HOH B 4 504 45 HOH HOH . Z 6 HOH B 5 505 25 HOH HOH . Z 6 HOH B 6 506 82 HOH HOH . Z 6 HOH B 7 507 26 HOH HOH . Z 6 HOH B 8 508 49 HOH HOH . Z 6 HOH B 9 509 68 HOH HOH . Z 6 HOH B 10 510 60 HOH HOH . Z 6 HOH B 11 511 27 HOH HOH . Z 6 HOH B 12 512 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1AAT . . . D 4 23.813 -49.926 -8.794 1 51.13 ? C4 A1AAT 702 A 1 HETATM 2 C C5 A1AAT . . . D 4 22.317 -49.834 -9.145 1 52.85 ? C5 A1AAT 702 A 1 HETATM 3 C C7 A1AAT . . . D 4 22.77 -51.272 -11.203 1 52.58 ? C7 A1AAT 702 A 1 HETATM 4 C C8 A1AAT . . . D 4 21.512 -49.191 -11.389 1 56.1 ? C8 A1AAT 702 A 1 HETATM 5 C C10 A1AAT . . . D 4 20.851 -47.975 -10.842 1 54.82 ? C10 A1AAT 702 A 1 HETATM 6 N N12 A1AAT . . . D 4 21.406 -46.758 -11.086 1 53.85 ? N12 A1AAT 702 A 1 HETATM 7 C C13 A1AAT . . . D 4 20.889 -45.503 -10.694 1 48.45 ? C13 A1AAT 702 A 1 HETATM 8 C C20 A1AAT . . . D 4 21.757 -44.413 -10.607 1 45.96 ? C20 A1AAT 702 A 1 HETATM 9 C C21 A1AAT . . . D 4 21.394 -50.749 -8.347 1 52.31 ? C21 A1AAT 702 A 1 HETATM 10 C C22 A1AAT . . . D 4 21.759 -51.28 -7.108 1 51.3 ? C22 A1AAT 702 A 1 HETATM 11 C C24 A1AAT . . . D 4 19.61 -52.365 -6.919 1 49.34 ? C24 A1AAT 702 A 1 HETATM 12 C C26 A1AAT . . . D 4 20.116 -51.029 -8.843 1 52.79 ? C26 A1AAT 702 A 1 HETATM 13 C C1 A1AAT . . . D 4 25.044 -50.355 -11.661 1 53.72 ? C1 A1AAT 702 A 1 HETATM 14 C C2 A1AAT . . . D 4 24.249 -51.382 -10.842 1 54.49 ? C2 A1AAT 702 A 1 HETATM 15 C C3 A1AAT . . . D 4 24.438 -51.213 -9.318 1 53.42 ? C3 A1AAT 702 A 1 HETATM 16 N N6 A1AAT . . . D 4 22.179 -50.067 -10.603 1 54.96 ? N6 A1AAT 702 A 1 HETATM 17 O O9 A1AAT . . . D 4 21.391 -49.39 -12.585 1 55.02 ? O9 A1AAT 702 A 1 HETATM 18 O O11 A1AAT . . . D 4 19.817 -48.151 -10.223 1 54.53 ? O11 A1AAT 702 A 1 HETATM 19 C C14 A1AAT . . . D 4 19.537 -45.282 -10.463 1 46.68 ? C14 A1AAT 702 A 1 HETATM 20 N N15 A1AAT . . . D 4 19.087 -44.087 -10.14 1 45.41 ? N15 A1AAT 702 A 1 HETATM 21 C C16 A1AAT . . . D 4 19.89 -43.054 -10.035 1 45.83 ? C16 A1AAT 702 A 1 HETATM 22 N N17 A1AAT . . . D 4 19.385 -41.813 -9.695 1 47.14 ? N17 A1AAT 702 A 1 HETATM 23 C C18 A1AAT . . . D 4 21.241 -43.185 -10.265 1 46.25 ? C18 A1AAT 702 A 1 HETATM 24 C C19 A1AAT . . . D 4 22.121 -41.973 -10.145 1 48.76 ? C19 A1AAT 702 A 1 HETATM 25 C C23 A1AAT . . . D 4 20.872 -52.089 -6.409 1 50.04 ? C23 A1AAT 702 A 1 HETATM 26 C C25 A1AAT . . . D 4 19.233 -51.84 -8.141 1 50.45 ? C25 A1AAT 702 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #