data_8VEU # _model_server_result.job_id bcw2z5TfVihkEntpTEH4EQ _model_server_result.datetime_utc '2024-12-23 04:36:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8veu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":711}' # _entry.id 8VEU # _exptl.entry_id 8VEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEU _cell.length_a 103.37 _cell.length_b 138.79 _cell.length_c 179.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 135 n n C1 C2 EDO sing 136 n n C1 H11 EDO sing 137 n n C1 H12 EDO sing 138 n n O1 HO1 EDO sing 139 n n C2 O2 EDO sing 140 n n C2 H21 EDO sing 141 n n C2 H22 EDO sing 142 n n O2 HO2 EDO sing 143 n n # _atom_sites.entry_id 8VEU _atom_sites.fract_transf_matrix[1][1] 0.009674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1AAT A 1 702 1 A1AAT LIG . E 5 EDO A 1 703 1 EDO EDO . F 5 EDO A 1 704 2 EDO EDO . G 5 EDO A 1 705 4 EDO EDO . H 5 EDO A 1 706 6 EDO EDO . I 5 EDO A 1 707 7 EDO EDO . J 5 EDO A 1 708 8 EDO EDO . K 5 EDO A 1 709 9 EDO EDO . L 5 EDO A 1 710 10 EDO EDO . M 5 EDO A 1 711 11 EDO EDO . N 5 EDO A 1 712 12 EDO EDO . O 5 EDO A 1 713 13 EDO EDO . P 5 EDO A 1 714 14 EDO EDO . Q 5 EDO A 1 715 15 EDO EDO . R 5 EDO A 1 716 16 EDO EDO . S 5 EDO A 1 717 17 EDO EDO . T 5 EDO A 1 718 18 EDO EDO . U 5 EDO A 1 719 19 EDO EDO . V 5 EDO B 1 401 3 EDO EDO . W 5 EDO B 1 402 5 EDO EDO . X 5 EDO B 1 403 20 EDO EDO . Y 6 HOH A 1 801 89 HOH HOH . Y 6 HOH A 2 802 32 HOH HOH . Y 6 HOH A 3 803 38 HOH HOH . Y 6 HOH A 4 804 12 HOH HOH . Y 6 HOH A 5 805 2 HOH HOH . Y 6 HOH A 6 806 17 HOH HOH . Y 6 HOH A 7 807 15 HOH HOH . Y 6 HOH A 8 808 37 HOH HOH . Y 6 HOH A 9 809 54 HOH HOH . Y 6 HOH A 10 810 52 HOH HOH . Y 6 HOH A 11 811 11 HOH HOH . Y 6 HOH A 12 812 39 HOH HOH . Y 6 HOH A 13 813 87 HOH HOH . Y 6 HOH A 14 814 78 HOH HOH . Y 6 HOH A 15 815 69 HOH HOH . Y 6 HOH A 16 816 20 HOH HOH . Y 6 HOH A 17 817 81 HOH HOH . Y 6 HOH A 18 818 85 HOH HOH . Y 6 HOH A 19 819 9 HOH HOH . Y 6 HOH A 20 820 4 HOH HOH . Y 6 HOH A 21 821 14 HOH HOH . Y 6 HOH A 22 822 43 HOH HOH . Y 6 HOH A 23 823 40 HOH HOH . Y 6 HOH A 24 824 76 HOH HOH . Y 6 HOH A 25 825 92 HOH HOH . Y 6 HOH A 26 826 28 HOH HOH . Y 6 HOH A 27 827 50 HOH HOH . Y 6 HOH A 28 828 72 HOH HOH . Y 6 HOH A 29 829 58 HOH HOH . Y 6 HOH A 30 830 33 HOH HOH . Y 6 HOH A 31 831 55 HOH HOH . Y 6 HOH A 32 832 23 HOH HOH . Y 6 HOH A 33 833 59 HOH HOH . Y 6 HOH A 34 834 86 HOH HOH . Y 6 HOH A 35 835 18 HOH HOH . Y 6 HOH A 36 836 51 HOH HOH . Y 6 HOH A 37 837 16 HOH HOH . Y 6 HOH A 38 838 70 HOH HOH . Y 6 HOH A 39 839 62 HOH HOH . Y 6 HOH A 40 840 75 HOH HOH . Y 6 HOH A 41 841 71 HOH HOH . Y 6 HOH A 42 842 6 HOH HOH . Y 6 HOH A 43 843 34 HOH HOH . Y 6 HOH A 44 844 5 HOH HOH . Y 6 HOH A 45 845 53 HOH HOH . Y 6 HOH A 46 846 48 HOH HOH . Y 6 HOH A 47 847 79 HOH HOH . Y 6 HOH A 48 848 44 HOH HOH . Y 6 HOH A 49 849 61 HOH HOH . Y 6 HOH A 50 850 10 HOH HOH . Y 6 HOH A 51 851 65 HOH HOH . Y 6 HOH A 52 852 57 HOH HOH . Y 6 HOH A 53 853 21 HOH HOH . Y 6 HOH A 54 854 29 HOH HOH . Y 6 HOH A 55 855 19 HOH HOH . Y 6 HOH A 56 856 41 HOH HOH . Y 6 HOH A 57 857 63 HOH HOH . Y 6 HOH A 58 858 7 HOH HOH . Y 6 HOH A 59 859 84 HOH HOH . Y 6 HOH A 60 860 35 HOH HOH . Y 6 HOH A 61 861 83 HOH HOH . Y 6 HOH A 62 862 24 HOH HOH . Y 6 HOH A 63 863 1 HOH HOH . Y 6 HOH A 64 864 56 HOH HOH . Y 6 HOH A 65 865 90 HOH HOH . Y 6 HOH A 66 866 91 HOH HOH . Y 6 HOH A 67 867 77 HOH HOH . Y 6 HOH A 68 868 47 HOH HOH . Y 6 HOH A 69 869 93 HOH HOH . Y 6 HOH A 70 870 64 HOH HOH . Y 6 HOH A 71 871 36 HOH HOH . Y 6 HOH A 72 872 88 HOH HOH . Y 6 HOH A 73 873 66 HOH HOH . Y 6 HOH A 74 874 74 HOH HOH . Y 6 HOH A 75 875 3 HOH HOH . Y 6 HOH A 76 876 8 HOH HOH . Y 6 HOH A 77 877 13 HOH HOH . Y 6 HOH A 78 878 67 HOH HOH . Y 6 HOH A 79 879 80 HOH HOH . Y 6 HOH A 80 880 73 HOH HOH . Y 6 HOH A 81 881 30 HOH HOH . Z 6 HOH B 1 501 22 HOH HOH . Z 6 HOH B 2 502 42 HOH HOH . Z 6 HOH B 3 503 31 HOH HOH . Z 6 HOH B 4 504 45 HOH HOH . Z 6 HOH B 5 505 25 HOH HOH . Z 6 HOH B 6 506 82 HOH HOH . Z 6 HOH B 7 507 26 HOH HOH . Z 6 HOH B 8 508 49 HOH HOH . Z 6 HOH B 9 509 68 HOH HOH . Z 6 HOH B 10 510 60 HOH HOH . Z 6 HOH B 11 511 27 HOH HOH . Z 6 HOH B 12 512 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 5 -0.636 -43.661 -28.624 1 74.79 ? C1 EDO 711 A 1 HETATM 2 O O1 EDO . . . M 5 -1.742 -44.505 -28.37 1 74.57 ? O1 EDO 711 A 1 HETATM 3 C C2 EDO . . . M 5 0.28 -44.217 -29.649 1 76.53 ? C2 EDO 711 A 1 HETATM 4 O O2 EDO . . . M 5 1.649 -43.938 -29.402 1 78.31 ? O2 EDO 711 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #