data_8VEW # _model_server_result.job_id bUNhL81PJo0MrwNudNERnQ _model_server_result.datetime_utc '2024-10-18 06:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 8VEW # _exptl.entry_id 8VEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.414 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{2-[(2R,5S)-5-methyl-2-phenylpiperidin-1-yl](oxo)acetamido}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEW _cell.length_a 100.56 _cell.length_b 137.732 _cell.length_c 177.676 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.042 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H22 N4 O3' _chem_comp.formula_weight 366.414 _chem_comp.id A1AAU _chem_comp.mon_nstd_flag . _chem_comp.name 5-{2-[(2R,5S)-5-methyl-2-phenylpiperidin-1-yl](oxo)acetamido}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C8 A1AAU doub 1 n n C1 C2 A1AAU sing 2 n n C8 C10 A1AAU sing 3 n n C8 N6 A1AAU sing 4 n n N12 C10 A1AAU sing 5 n n N12 C13 A1AAU sing 6 n n C7 C2 A1AAU sing 7 n n C7 N6 A1AAU sing 8 n n C10 O11 A1AAU doub 9 n n N20 C19 A1AAU sing 10 n n C18 C13 A1AAU doub 11 n y C18 C17 A1AAU sing 12 n y C13 C14 A1AAU sing 13 n y C2 C3 A1AAU sing 14 n n C19 C17 A1AAU sing 15 n n C19 O21 A1AAU doub 16 n n N6 C5 A1AAU sing 17 n n C17 C16 A1AAU doub 18 n y C14 N15 A1AAU doub 19 n y C16 N15 A1AAU sing 20 n y C3 C4 A1AAU sing 21 n n C5 C4 A1AAU sing 22 n n C5 C22 A1AAU sing 23 n n C27 C22 A1AAU doub 24 n y C27 C26 A1AAU sing 25 n y C22 C23 A1AAU sing 26 n y C26 C25 A1AAU doub 27 n y C23 C24 A1AAU doub 28 n y C25 C24 A1AAU sing 29 n y C4 H1 A1AAU sing 30 n n C4 H2 A1AAU sing 31 n n C5 H3 A1AAU sing 32 n n C7 H4 A1AAU sing 33 n n C7 H5 A1AAU sing 34 n n N12 H6 A1AAU sing 35 n n C24 H7 A1AAU sing 36 n n C26 H8 A1AAU sing 37 n n C1 H9 A1AAU sing 38 n n C1 H10 A1AAU sing 39 n n C1 H11 A1AAU sing 40 n n C2 H12 A1AAU sing 41 n n C3 H13 A1AAU sing 42 n n C3 H14 A1AAU sing 43 n n C14 H15 A1AAU sing 44 n n C16 H16 A1AAU sing 45 n n C18 H17 A1AAU sing 46 n n N20 H18 A1AAU sing 47 n n N20 H19 A1AAU sing 48 n n C23 H20 A1AAU sing 49 n n C25 H21 A1AAU sing 50 n n C27 H22 A1AAU sing 51 n n # _atom_sites.entry_id 8VEW _atom_sites.fract_transf_matrix[1][1] 0.009944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1AAU A 1 702 1 A1AAU LIG . E 5 GOL A 1 703 1 GOL GOL . F 6 CL A 1 704 1 CL CL . G 6 CL A 1 705 2 CL CL . H 7 HOH A 1 801 38 HOH HOH . H 7 HOH A 2 802 9 HOH HOH . H 7 HOH A 3 803 1 HOH HOH . H 7 HOH A 4 804 13 HOH HOH . H 7 HOH A 5 805 26 HOH HOH . H 7 HOH A 6 806 19 HOH HOH . H 7 HOH A 7 807 15 HOH HOH . H 7 HOH A 8 808 23 HOH HOH . H 7 HOH A 9 809 14 HOH HOH . H 7 HOH A 10 810 22 HOH HOH . H 7 HOH A 11 811 34 HOH HOH . H 7 HOH A 12 812 17 HOH HOH . H 7 HOH A 13 813 41 HOH HOH . H 7 HOH A 14 814 10 HOH HOH . H 7 HOH A 15 815 21 HOH HOH . H 7 HOH A 16 816 12 HOH HOH . H 7 HOH A 17 817 39 HOH HOH . H 7 HOH A 18 818 6 HOH HOH . H 7 HOH A 19 819 40 HOH HOH . H 7 HOH A 20 820 3 HOH HOH . H 7 HOH A 21 821 24 HOH HOH . H 7 HOH A 22 822 4 HOH HOH . H 7 HOH A 23 823 29 HOH HOH . H 7 HOH A 24 824 31 HOH HOH . H 7 HOH A 25 825 32 HOH HOH . H 7 HOH A 26 826 16 HOH HOH . H 7 HOH A 27 827 35 HOH HOH . H 7 HOH A 28 828 37 HOH HOH . H 7 HOH A 29 829 33 HOH HOH . H 7 HOH A 30 830 8 HOH HOH . H 7 HOH A 31 831 2 HOH HOH . H 7 HOH A 32 832 11 HOH HOH . I 7 HOH B 1 401 28 HOH HOH . I 7 HOH B 2 402 18 HOH HOH . I 7 HOH B 3 403 30 HOH HOH . I 7 HOH B 4 404 20 HOH HOH . I 7 HOH B 5 405 7 HOH HOH . I 7 HOH B 6 406 27 HOH HOH . I 7 HOH B 7 407 25 HOH HOH . I 7 HOH B 8 408 36 HOH HOH . I 7 HOH B 9 409 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1AAU . . . D 4 23.423 -49.132 -8.703 1 54.68 ? C4 A1AAU 702 A 1 HETATM 2 C C5 A1AAU . . . D 4 21.929 -49.184 -9.046 1 56.84 ? C5 A1AAU 702 A 1 HETATM 3 C C7 A1AAU . . . D 4 22.477 -50.763 -10.931 1 53.72 ? C7 A1AAU 702 A 1 HETATM 4 C C8 A1AAU . . . D 4 21.111 -48.756 -11.342 1 58.5 ? C8 A1AAU 702 A 1 HETATM 5 C C10 A1AAU . . . D 4 20.43 -47.532 -10.855 1 60.32 ? C10 A1AAU 702 A 1 HETATM 6 N N12 A1AAU . . . D 4 21.1 -46.369 -11.006 1 62.31 ? N12 A1AAU 702 A 1 HETATM 7 C C13 A1AAU . . . D 4 20.667 -45.076 -10.629 1 60.7 ? C13 A1AAU 702 A 1 HETATM 8 C C17 A1AAU . . . D 4 21.272 -42.781 -10.389 1 58.66 ? C17 A1AAU 702 A 1 HETATM 9 C C22 A1AAU . . . D 4 21.101 -50.171 -8.237 1 62.28 ? C22 A1AAU 702 A 1 HETATM 10 C C24 A1AAU . . . D 4 20.731 -51.641 -6.369 1 62.73 ? C24 A1AAU 702 A 1 HETATM 11 C C26 A1AAU . . . D 4 19.005 -51.377 -8.005 1 64.69 ? C26 A1AAU 702 A 1 HETATM 12 C C1 A1AAU . . . D 4 24.716 -49.815 -11.455 1 52.51 ? C1 A1AAU 702 A 1 HETATM 13 C C2 A1AAU . . . D 4 23.95 -50.776 -10.544 1 53.39 ? C2 A1AAU 702 A 1 HETATM 14 C C3 A1AAU . . . D 4 24.128 -50.439 -9.06 1 52.87 ? C3 A1AAU 702 A 1 HETATM 15 N N6 A1AAU . . . D 4 21.823 -49.529 -10.477 1 56.66 ? N6 A1AAU 702 A 1 HETATM 16 O O9 A1AAU . . . D 4 20.999 -49.021 -12.524 1 55.12 ? O9 A1AAU 702 A 1 HETATM 17 O O11 A1AAU . . . D 4 19.327 -47.649 -10.348 1 62.63 ? O11 A1AAU 702 A 1 HETATM 18 C C14 A1AAU . . . D 4 19.39 -44.714 -10.194 1 57.33 ? C14 A1AAU 702 A 1 HETATM 19 N N15 A1AAU . . . D 4 19.101 -43.463 -9.884 1 54.6 ? N15 A1AAU 702 A 1 HETATM 20 C C16 A1AAU . . . D 4 19.976 -42.491 -9.962 1 56.65 ? C16 A1AAU 702 A 1 HETATM 21 C C18 A1AAU . . . D 4 21.617 -44.08 -10.727 1 59.22 ? C18 A1AAU 702 A 1 HETATM 22 C C19 A1AAU . . . D 4 22.331 -41.777 -10.524 1 58.6 ? C19 A1AAU 702 A 1 HETATM 23 N N20 A1AAU . . . D 4 22.03 -40.508 -10.836 1 56.07 ? N20 A1AAU 702 A 1 HETATM 24 O O21 A1AAU . . . D 4 23.487 -42.133 -10.374 1 57.57 ? O21 A1AAU 702 A 1 HETATM 25 C C23 A1AAU . . . D 4 21.544 -50.752 -7.053 1 62.59 ? C23 A1AAU 702 A 1 HETATM 26 C C25 A1AAU . . . D 4 19.466 -51.954 -6.84 1 62.72 ? C25 A1AAU 702 A 1 HETATM 27 C C27 A1AAU . . . D 4 19.818 -50.491 -8.696 1 66.59 ? C27 A1AAU 702 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #