data_8VEW # _model_server_result.job_id AyEP_pDTlRpv-DEBXRbTxA _model_server_result.datetime_utc '2024-12-23 04:43:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 8VEW # _exptl.entry_id 8VEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEW _cell.length_a 100.56 _cell.length_b 137.732 _cell.length_c 177.676 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.042 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 8VEW _atom_sites.fract_transf_matrix[1][1] 0.009944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1AAU A 1 702 1 A1AAU LIG . E 5 GOL A 1 703 1 GOL GOL . F 6 CL A 1 704 1 CL CL . G 6 CL A 1 705 2 CL CL . H 7 HOH A 1 801 38 HOH HOH . H 7 HOH A 2 802 9 HOH HOH . H 7 HOH A 3 803 1 HOH HOH . H 7 HOH A 4 804 13 HOH HOH . H 7 HOH A 5 805 26 HOH HOH . H 7 HOH A 6 806 19 HOH HOH . H 7 HOH A 7 807 15 HOH HOH . H 7 HOH A 8 808 23 HOH HOH . H 7 HOH A 9 809 14 HOH HOH . H 7 HOH A 10 810 22 HOH HOH . H 7 HOH A 11 811 34 HOH HOH . H 7 HOH A 12 812 17 HOH HOH . H 7 HOH A 13 813 41 HOH HOH . H 7 HOH A 14 814 10 HOH HOH . H 7 HOH A 15 815 21 HOH HOH . H 7 HOH A 16 816 12 HOH HOH . H 7 HOH A 17 817 39 HOH HOH . H 7 HOH A 18 818 6 HOH HOH . H 7 HOH A 19 819 40 HOH HOH . H 7 HOH A 20 820 3 HOH HOH . H 7 HOH A 21 821 24 HOH HOH . H 7 HOH A 22 822 4 HOH HOH . H 7 HOH A 23 823 29 HOH HOH . H 7 HOH A 24 824 31 HOH HOH . H 7 HOH A 25 825 32 HOH HOH . H 7 HOH A 26 826 16 HOH HOH . H 7 HOH A 27 827 35 HOH HOH . H 7 HOH A 28 828 37 HOH HOH . H 7 HOH A 29 829 33 HOH HOH . H 7 HOH A 30 830 8 HOH HOH . H 7 HOH A 31 831 2 HOH HOH . H 7 HOH A 32 832 11 HOH HOH . I 7 HOH B 1 401 28 HOH HOH . I 7 HOH B 2 402 18 HOH HOH . I 7 HOH B 3 403 30 HOH HOH . I 7 HOH B 4 404 20 HOH HOH . I 7 HOH B 5 405 7 HOH HOH . I 7 HOH B 6 406 27 HOH HOH . I 7 HOH B 7 407 25 HOH HOH . I 7 HOH B 8 408 36 HOH HOH . I 7 HOH B 9 409 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 10.762 -78.797 -8.379 1 63.61 ? C1 GOL 703 A 1 HETATM 2 O O1 GOL . . . E 5 10.107 -79.995 -7.959 1 55.51 ? O1 GOL 703 A 1 HETATM 3 C C2 GOL . . . E 5 12.178 -79.065 -8.865 1 66.62 ? C2 GOL 703 A 1 HETATM 4 O O2 GOL . . . E 5 13.123 -78.44 -7.992 1 59.08 ? O2 GOL 703 A 1 HETATM 5 C C3 GOL . . . E 5 12.421 -78.657 -10.315 1 67.74 ? C3 GOL 703 A 1 HETATM 6 O O3 GOL . . . E 5 12.594 -77.253 -10.504 1 63.74 ? O3 GOL 703 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #