data_8VEX # _model_server_result.job_id MIQzxTkSn6bG3LSXIA91mw _model_server_result.datetime_utc '2024-10-18 05:19:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 8VEX # _exptl.entry_id 8VEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.43 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(6-amino-5-methylpyridin-3-yl)-2-[(2R,5S)-2-(4-hydroxyphenyl)-5-methylpiperidin-1-yl]-2-oxoacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEX _cell.length_a 99.47 _cell.length_b 136.35 _cell.length_c 177.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.045 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H24 N4 O3' _chem_comp.formula_weight 368.43 _chem_comp.id A1AAR _chem_comp.mon_nstd_flag . _chem_comp.name N-(6-amino-5-methylpyridin-3-yl)-2-[(2R,5S)-2-(4-hydroxyphenyl)-5-methylpiperidin-1-yl]-2-oxoacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C8 A1AAR doub 1 n n C8 C10 A1AAR sing 2 n n C8 N6 A1AAR sing 3 n n C7 C2 A1AAR sing 4 n n C7 N6 A1AAR sing 5 n n N12 C10 A1AAR sing 6 n n N12 C13 A1AAR sing 7 n n C10 O11 A1AAR doub 8 n n C1 C2 A1AAR sing 9 n n C20 C13 A1AAR doub 10 n y C20 C18 A1AAR sing 11 n y C13 C14 A1AAR sing 12 n y C2 C3 A1AAR sing 13 n n N6 C5 A1AAR sing 14 n n C19 C18 A1AAR sing 15 n n C18 C16 A1AAR doub 16 n y C14 N15 A1AAR doub 17 n y C16 N15 A1AAR sing 18 n y C16 N17 A1AAR sing 19 n n C5 C4 A1AAR sing 20 n n C5 C21 A1AAR sing 21 n n C27 C26 A1AAR doub 22 n y C27 C21 A1AAR sing 23 n y C3 C4 A1AAR sing 24 n n C26 C24 A1AAR sing 25 n y C21 C22 A1AAR doub 26 n y C24 O25 A1AAR sing 27 n n C24 C23 A1AAR doub 28 n y C22 C23 A1AAR sing 29 n y C4 H1 A1AAR sing 30 n n C4 H2 A1AAR sing 31 n n C5 H3 A1AAR sing 32 n n C7 H4 A1AAR sing 33 n n C7 H5 A1AAR sing 34 n n N12 H6 A1AAR sing 35 n n C20 H7 A1AAR sing 36 n n C22 H8 A1AAR sing 37 n n C26 H9 A1AAR sing 38 n n C1 H10 A1AAR sing 39 n n C1 H11 A1AAR sing 40 n n C1 H12 A1AAR sing 41 n n C2 H13 A1AAR sing 42 n n C3 H14 A1AAR sing 43 n n C3 H15 A1AAR sing 44 n n C14 H16 A1AAR sing 45 n n N17 H17 A1AAR sing 46 n n N17 H18 A1AAR sing 47 n n C19 H19 A1AAR sing 48 n n C19 H20 A1AAR sing 49 n n C19 H21 A1AAR sing 50 n n C23 H22 A1AAR sing 51 n n O25 H23 A1AAR sing 52 n n C27 H24 A1AAR sing 53 n n # _atom_sites.entry_id 8VEX _atom_sites.fract_transf_matrix[1][1] 0.010053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1AAR A 1 702 1 A1AAR LIG . E 5 CL A 1 703 1 CL CL . F 5 CL A 1 704 2 CL CL . G 6 GOL A 1 705 1 GOL GOL . H 7 HOH A 1 801 17 HOH HOH . H 7 HOH A 2 802 34 HOH HOH . H 7 HOH A 3 803 24 HOH HOH . H 7 HOH A 4 804 53 HOH HOH . H 7 HOH A 5 805 18 HOH HOH . H 7 HOH A 6 806 9 HOH HOH . H 7 HOH A 7 807 13 HOH HOH . H 7 HOH A 8 808 25 HOH HOH . H 7 HOH A 9 809 22 HOH HOH . H 7 HOH A 10 810 54 HOH HOH . H 7 HOH A 11 811 47 HOH HOH . H 7 HOH A 12 812 11 HOH HOH . H 7 HOH A 13 813 19 HOH HOH . H 7 HOH A 14 814 32 HOH HOH . H 7 HOH A 15 815 2 HOH HOH . H 7 HOH A 16 816 6 HOH HOH . H 7 HOH A 17 817 28 HOH HOH . H 7 HOH A 18 818 46 HOH HOH . H 7 HOH A 19 819 3 HOH HOH . H 7 HOH A 20 820 16 HOH HOH . H 7 HOH A 21 821 1 HOH HOH . H 7 HOH A 22 822 21 HOH HOH . H 7 HOH A 23 823 4 HOH HOH . H 7 HOH A 24 824 5 HOH HOH . H 7 HOH A 25 825 44 HOH HOH . H 7 HOH A 26 826 26 HOH HOH . H 7 HOH A 27 827 7 HOH HOH . H 7 HOH A 28 828 30 HOH HOH . H 7 HOH A 29 829 35 HOH HOH . H 7 HOH A 30 830 33 HOH HOH . H 7 HOH A 31 831 31 HOH HOH . H 7 HOH A 32 832 40 HOH HOH . H 7 HOH A 33 833 8 HOH HOH . H 7 HOH A 34 834 20 HOH HOH . H 7 HOH A 35 835 50 HOH HOH . H 7 HOH A 36 836 52 HOH HOH . H 7 HOH A 37 837 27 HOH HOH . H 7 HOH A 38 838 58 HOH HOH . H 7 HOH A 39 839 10 HOH HOH . H 7 HOH A 40 840 42 HOH HOH . H 7 HOH A 41 841 15 HOH HOH . H 7 HOH A 42 842 49 HOH HOH . H 7 HOH A 43 843 38 HOH HOH . H 7 HOH A 44 844 41 HOH HOH . H 7 HOH A 45 845 39 HOH HOH . H 7 HOH A 46 846 45 HOH HOH . H 7 HOH A 47 847 57 HOH HOH . H 7 HOH A 48 848 59 HOH HOH . H 7 HOH A 49 849 36 HOH HOH . H 7 HOH A 50 850 48 HOH HOH . H 7 HOH A 51 851 37 HOH HOH . H 7 HOH A 52 852 43 HOH HOH . H 7 HOH A 53 853 56 HOH HOH . H 7 HOH A 54 854 51 HOH HOH . I 7 HOH B 1 401 29 HOH HOH . I 7 HOH B 2 402 23 HOH HOH . I 7 HOH B 3 403 12 HOH HOH . I 7 HOH B 4 404 14 HOH HOH . I 7 HOH B 5 405 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1AAR . . . D 4 23.27 -48.954 -8.173 1 82.7 ? C4 A1AAR 702 A 1 HETATM 2 C C5 A1AAR . . . D 4 21.86 -48.775 -8.758 1 83.6 ? C5 A1AAR 702 A 1 HETATM 3 C C7 A1AAR . . . D 4 22.619 -50.134 -10.762 1 79.79 ? C7 A1AAR 702 A 1 HETATM 4 C C8 A1AAR . . . D 4 21.242 -48.157 -11.074 1 85.69 ? C8 A1AAR 702 A 1 HETATM 5 C C10 A1AAR . . . D 4 20.449 -46.961 -10.666 1 83.86 ? C10 A1AAR 702 A 1 HETATM 6 N N12 A1AAR . . . D 4 21.068 -45.749 -10.731 1 77.49 ? N12 A1AAR 702 A 1 HETATM 7 C C13 A1AAR . . . D 4 20.446 -44.526 -10.432 1 74.35 ? C13 A1AAR 702 A 1 HETATM 8 C C20 A1AAR . . . D 4 21.205 -43.348 -10.459 1 69.27 ? C20 A1AAR 702 A 1 HETATM 9 C C21 A1AAR . . . D 4 20.824 -49.673 -8.107 1 87.85 ? C21 A1AAR 702 A 1 HETATM 10 C C22 A1AAR . . . D 4 21.052 -50.313 -6.886 1 86.54 ? C22 A1AAR 702 A 1 HETATM 11 C C24 A1AAR . . . D 4 18.862 -51.252 -6.937 1 87.9 ? C24 A1AAR 702 A 1 HETATM 12 C C26 A1AAR . . . D 4 18.611 -50.613 -8.147 1 94.44 ? C26 A1AAR 702 A 1 HETATM 13 C C1 A1AAR . . . D 4 24.751 -48.81 -10.656 1 80.77 ? C1 A1AAR 702 A 1 HETATM 14 C C2 A1AAR . . . D 4 24.049 -50.102 -10.238 1 78.34 ? C2 A1AAR 702 A 1 HETATM 15 C C3 A1AAR . . . D 4 23.943 -50.211 -8.724 1 81.75 ? C3 A1AAR 702 A 1 HETATM 16 N N6 A1AAR . . . D 4 21.884 -48.986 -10.217 1 81.78 ? N6 A1AAR 702 A 1 HETATM 17 O O9 A1AAR . . . D 4 21.287 -48.378 -12.264 1 88.85 ? O9 A1AAR 702 A 1 HETATM 18 O O11 A1AAR . . . D 4 19.283 -47.126 -10.325 1 80.91 ? O11 A1AAR 702 A 1 HETATM 19 C C14 A1AAR . . . D 4 19.08 -44.427 -10.159 1 73.9 ? C14 A1AAR 702 A 1 HETATM 20 N N15 A1AAR . . . D 4 18.528 -43.26 -9.907 1 71.5 ? N15 A1AAR 702 A 1 HETATM 21 C C16 A1AAR . . . D 4 19.209 -42.132 -9.913 1 67.69 ? C16 A1AAR 702 A 1 HETATM 22 N N17 A1AAR . . . D 4 18.566 -40.928 -9.641 1 65.87 ? N17 A1AAR 702 A 1 HETATM 23 C C18 A1AAR . . . D 4 20.567 -42.154 -10.185 1 66.89 ? C18 A1AAR 702 A 1 HETATM 24 C C19 A1AAR . . . D 4 21.314 -40.864 -10.189 1 68.14 ? C19 A1AAR 702 A 1 HETATM 25 C C23 A1AAR . . . D 4 20.082 -51.103 -6.312 1 84.33 ? C23 A1AAR 702 A 1 HETATM 26 O O25 A1AAR . . . D 4 17.926 -52.029 -6.354 1 86.17 ? O25 A1AAR 702 A 1 HETATM 27 C C27 A1AAR . . . D 4 19.585 -49.826 -8.726 1 91.12 ? C27 A1AAR 702 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #