data_8VEY
#
_model_server_result.job_id            mUwvkTx-xOASlV52W0vCtA 
_model_server_result.datetime_utc      '2024-11-08 13:45:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vey 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    8VEY 
#
_exptl.entry_id    8VEY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VEY 
_cell.length_a            102.31 
_cell.length_b            136.74 
_cell.length_c            177.75 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VEY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              208 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             255 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              247 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.048 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 301 n n 
CS HCS1 MTA sing 302 n n 
CS HCS2 MTA sing 303 n n 
CS HCS3 MTA sing 304 n n 
S5' C5' MTA sing 305 n n 
C5' C4' MTA sing 306 n n 
C5' "H5'1" MTA sing 307 n n 
C5' "H5'2" MTA sing 308 n n 
C4' O4' MTA sing 309 n n 
C4' C3' MTA sing 310 n n 
C4' H4' MTA sing 311 n n 
O4' C1' MTA sing 312 n n 
C2' O2' MTA sing 313 n n 
C2' C3' MTA sing 314 n n 
C2' C1' MTA sing 315 n n 
C2' H2' MTA sing 316 n n 
O2' HO2' MTA sing 317 n n 
C3' O3' MTA sing 318 n n 
C3' H3' MTA sing 319 n n 
O3' H3T MTA sing 320 n n 
C1' N9 MTA sing 321 n n 
C1' H1' MTA sing 322 n n 
N9 C8 MTA sing 323 n y 
N9 C4 MTA sing 324 n y 
C8 N7 MTA doub 325 n y 
C8 H8 MTA sing 326 n n 
N7 C5 MTA sing 327 n y 
C5 C6 MTA sing 328 n y 
C5 C4 MTA doub 329 n y 
C6 N6 MTA sing 330 n n 
C6 N1 MTA doub 331 n y 
N6 H61 MTA sing 332 n n 
N6 H62 MTA sing 333 n n 
N1 C2 MTA sing 334 n y 
C2 N3 MTA doub 335 n y 
C2 H2 MTA sing 336 n n 
N3 C4 MTA sing 337 n y 
#
_atom_sites.entry_id                     8VEY 
_atom_sites.fract_transf_matrix[1][1]    0.009774 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007313 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005626 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MTA A 1 701 1 MTA MTA . 
D 4 A1AAV A 1 702 1 A1AAV LIG . 
E 5 PEG A 1 703 2 PEG PEG . 
F 5 PEG A 1 704 4 PEG PEG . 
G 6 EDO A 1 705 1 EDO EDO . 
H 7 CL A 1 706 1 CL CL . 
I 7 CL A 1 707 2 CL CL . 
J 7 CL A 1 708 3 CL CL . 
K 7 CL A 1 709 4 CL CL . 
L 7 CL A 1 710 5 CL CL . 
M 7 CL A 1 711 6 CL CL . 
N 5 PEG B 1 401 1 PEG PEG . 
O 5 PEG B 1 402 3 PEG PEG . 
P 6 EDO B 1 403 2 EDO EDO . 
Q 8 HOH A 1 801 96 HOH HOH . 
Q 8 HOH A 2 802 93 HOH HOH . 
Q 8 HOH A 3 803 11 HOH HOH . 
Q 8 HOH A 4 804 35 HOH HOH . 
Q 8 HOH A 5 805 39 HOH HOH . 
Q 8 HOH A 6 806 88 HOH HOH . 
Q 8 HOH A 7 807 140 HOH HOH . 
Q 8 HOH A 8 808 91 HOH HOH . 
Q 8 HOH A 9 809 22 HOH HOH . 
Q 8 HOH A 10 810 118 HOH HOH . 
Q 8 HOH A 11 811 98 HOH HOH . 
Q 8 HOH A 12 812 3 HOH HOH . 
Q 8 HOH A 13 813 84 HOH HOH . 
Q 8 HOH A 14 814 85 HOH HOH . 
Q 8 HOH A 15 815 62 HOH HOH . 
Q 8 HOH A 16 816 104 HOH HOH . 
Q 8 HOH A 17 817 23 HOH HOH . 
Q 8 HOH A 18 818 120 HOH HOH . 
Q 8 HOH A 19 819 34 HOH HOH . 
Q 8 HOH A 20 820 131 HOH HOH . 
Q 8 HOH A 21 821 112 HOH HOH . 
Q 8 HOH A 22 822 152 HOH HOH . 
Q 8 HOH A 23 823 145 HOH HOH . 
Q 8 HOH A 24 824 109 HOH HOH . 
Q 8 HOH A 25 825 148 HOH HOH . 
Q 8 HOH A 26 826 95 HOH HOH . 
Q 8 HOH A 27 827 49 HOH HOH . 
Q 8 HOH A 28 828 25 HOH HOH . 
Q 8 HOH A 29 829 2 HOH HOH . 
Q 8 HOH A 30 830 99 HOH HOH . 
Q 8 HOH A 31 831 18 HOH HOH . 
Q 8 HOH A 32 832 65 HOH HOH . 
Q 8 HOH A 33 833 55 HOH HOH . 
Q 8 HOH A 34 834 57 HOH HOH . 
Q 8 HOH A 35 835 79 HOH HOH . 
Q 8 HOH A 36 836 44 HOH HOH . 
Q 8 HOH A 37 837 77 HOH HOH . 
Q 8 HOH A 38 838 171 HOH HOH . 
Q 8 HOH A 39 839 50 HOH HOH . 
Q 8 HOH A 40 840 10 HOH HOH . 
Q 8 HOH A 41 841 72 HOH HOH . 
Q 8 HOH A 42 842 134 HOH HOH . 
Q 8 HOH A 43 843 103 HOH HOH . 
Q 8 HOH A 44 844 166 HOH HOH . 
Q 8 HOH A 45 845 100 HOH HOH . 
Q 8 HOH A 46 846 37 HOH HOH . 
Q 8 HOH A 47 847 174 HOH HOH . 
Q 8 HOH A 48 848 45 HOH HOH . 
Q 8 HOH A 49 849 159 HOH HOH . 
Q 8 HOH A 50 850 68 HOH HOH . 
Q 8 HOH A 51 851 63 HOH HOH . 
Q 8 HOH A 52 852 181 HOH HOH . 
Q 8 HOH A 53 853 20 HOH HOH . 
Q 8 HOH A 54 854 157 HOH HOH . 
Q 8 HOH A 55 855 158 HOH HOH . 
Q 8 HOH A 56 856 128 HOH HOH . 
Q 8 HOH A 57 857 4 HOH HOH . 
Q 8 HOH A 58 858 110 HOH HOH . 
Q 8 HOH A 59 859 52 HOH HOH . 
Q 8 HOH A 60 860 116 HOH HOH . 
Q 8 HOH A 61 861 24 HOH HOH . 
Q 8 HOH A 62 862 43 HOH HOH . 
Q 8 HOH A 63 863 60 HOH HOH . 
Q 8 HOH A 64 864 113 HOH HOH . 
Q 8 HOH A 65 865 9 HOH HOH . 
Q 8 HOH A 66 866 151 HOH HOH . 
Q 8 HOH A 67 867 40 HOH HOH . 
Q 8 HOH A 68 868 107 HOH HOH . 
Q 8 HOH A 69 869 80 HOH HOH . 
Q 8 HOH A 70 870 177 HOH HOH . 
Q 8 HOH A 71 871 47 HOH HOH . 
Q 8 HOH A 72 872 105 HOH HOH . 
Q 8 HOH A 73 873 71 HOH HOH . 
Q 8 HOH A 74 874 30 HOH HOH . 
Q 8 HOH A 75 875 147 HOH HOH . 
Q 8 HOH A 76 876 78 HOH HOH . 
Q 8 HOH A 77 877 137 HOH HOH . 
Q 8 HOH A 78 878 136 HOH HOH . 
Q 8 HOH A 79 879 26 HOH HOH . 
Q 8 HOH A 80 880 66 HOH HOH . 
Q 8 HOH A 81 881 106 HOH HOH . 
Q 8 HOH A 82 882 48 HOH HOH . 
Q 8 HOH A 83 883 38 HOH HOH . 
Q 8 HOH A 84 884 108 HOH HOH . 
Q 8 HOH A 85 885 144 HOH HOH . 
Q 8 HOH A 86 886 7 HOH HOH . 
Q 8 HOH A 87 887 16 HOH HOH . 
Q 8 HOH A 88 888 94 HOH HOH . 
Q 8 HOH A 89 889 14 HOH HOH . 
Q 8 HOH A 90 890 70 HOH HOH . 
Q 8 HOH A 91 891 143 HOH HOH . 
Q 8 HOH A 92 892 82 HOH HOH . 
Q 8 HOH A 93 893 56 HOH HOH . 
Q 8 HOH A 94 894 53 HOH HOH . 
Q 8 HOH A 95 895 163 HOH HOH . 
Q 8 HOH A 96 896 115 HOH HOH . 
Q 8 HOH A 97 897 153 HOH HOH . 
Q 8 HOH A 98 898 74 HOH HOH . 
Q 8 HOH A 99 899 92 HOH HOH . 
Q 8 HOH A 100 900 124 HOH HOH . 
Q 8 HOH A 101 901 75 HOH HOH . 
Q 8 HOH A 102 902 141 HOH HOH . 
Q 8 HOH A 103 903 17 HOH HOH . 
Q 8 HOH A 104 904 97 HOH HOH . 
Q 8 HOH A 105 905 41 HOH HOH . 
Q 8 HOH A 106 906 33 HOH HOH . 
Q 8 HOH A 107 907 46 HOH HOH . 
Q 8 HOH A 108 908 155 HOH HOH . 
Q 8 HOH A 109 909 162 HOH HOH . 
Q 8 HOH A 110 910 61 HOH HOH . 
Q 8 HOH A 111 911 146 HOH HOH . 
Q 8 HOH A 112 912 89 HOH HOH . 
Q 8 HOH A 113 913 86 HOH HOH . 
Q 8 HOH A 114 914 27 HOH HOH . 
Q 8 HOH A 115 915 54 HOH HOH . 
Q 8 HOH A 116 916 83 HOH HOH . 
Q 8 HOH A 117 917 149 HOH HOH . 
Q 8 HOH A 118 918 29 HOH HOH . 
Q 8 HOH A 119 919 150 HOH HOH . 
Q 8 HOH A 120 920 31 HOH HOH . 
Q 8 HOH A 121 921 114 HOH HOH . 
Q 8 HOH A 122 922 64 HOH HOH . 
Q 8 HOH A 123 923 123 HOH HOH . 
Q 8 HOH A 124 924 111 HOH HOH . 
Q 8 HOH A 125 925 8 HOH HOH . 
Q 8 HOH A 126 926 135 HOH HOH . 
Q 8 HOH A 127 927 19 HOH HOH . 
Q 8 HOH A 128 928 130 HOH HOH . 
Q 8 HOH A 129 929 125 HOH HOH . 
Q 8 HOH A 130 930 15 HOH HOH . 
Q 8 HOH A 131 931 13 HOH HOH . 
Q 8 HOH A 132 932 102 HOH HOH . 
Q 8 HOH A 133 933 32 HOH HOH . 
Q 8 HOH A 134 934 165 HOH HOH . 
Q 8 HOH A 135 935 126 HOH HOH . 
Q 8 HOH A 136 936 133 HOH HOH . 
Q 8 HOH A 137 937 121 HOH HOH . 
Q 8 HOH A 138 938 142 HOH HOH . 
Q 8 HOH A 139 939 161 HOH HOH . 
Q 8 HOH A 140 940 132 HOH HOH . 
Q 8 HOH A 141 941 160 HOH HOH . 
Q 8 HOH A 142 942 21 HOH HOH . 
Q 8 HOH A 143 943 139 HOH HOH . 
Q 8 HOH A 144 944 176 HOH HOH . 
Q 8 HOH A 145 945 154 HOH HOH . 
Q 8 HOH A 146 946 129 HOH HOH . 
Q 8 HOH A 147 947 127 HOH HOH . 
Q 8 HOH A 148 948 119 HOH HOH . 
Q 8 HOH A 149 949 156 HOH HOH . 
Q 8 HOH A 150 950 169 HOH HOH . 
Q 8 HOH A 151 951 168 HOH HOH . 
Q 8 HOH A 152 952 122 HOH HOH . 
Q 8 HOH A 153 953 170 HOH HOH . 
Q 8 HOH A 154 954 164 HOH HOH . 
Q 8 HOH A 155 955 173 HOH HOH . 
R 8 HOH B 1 501 1 HOH HOH . 
R 8 HOH B 2 502 179 HOH HOH . 
R 8 HOH B 3 503 90 HOH HOH . 
R 8 HOH B 4 504 59 HOH HOH . 
R 8 HOH B 5 505 167 HOH HOH . 
R 8 HOH B 6 506 6 HOH HOH . 
R 8 HOH B 7 507 178 HOH HOH . 
R 8 HOH B 8 508 138 HOH HOH . 
R 8 HOH B 9 509 58 HOH HOH . 
R 8 HOH B 10 510 73 HOH HOH . 
R 8 HOH B 11 511 87 HOH HOH . 
R 8 HOH B 12 512 101 HOH HOH . 
R 8 HOH B 13 513 51 HOH HOH . 
R 8 HOH B 14 514 76 HOH HOH . 
R 8 HOH B 15 515 42 HOH HOH . 
R 8 HOH B 16 516 81 HOH HOH . 
R 8 HOH B 17 517 12 HOH HOH . 
R 8 HOH B 18 518 28 HOH HOH . 
R 8 HOH B 19 519 117 HOH HOH . 
R 8 HOH B 20 520 5 HOH HOH . 
R 8 HOH B 21 521 67 HOH HOH . 
R 8 HOH B 22 522 69 HOH HOH . 
R 8 HOH B 23 523 36 HOH HOH . 
R 8 HOH B 24 524 180 HOH HOH . 
R 8 HOH B 25 525 175 HOH HOH . 
R 8 HOH B 26 526 172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . C 3 21.863 -38.439 -6.613 1 58.36 ? CS MTA 701 A 1 
HETATM 2 S S5' MTA . . . C 3 20.444 -39.531 -6.583 1 58.96 ? S5' MTA 701 A 1 
HETATM 3 C C5' MTA . . . C 3 19.096 -38.334 -6.437 1 57.56 ? C5' MTA 701 A 1 
HETATM 4 C C4' MTA . . . C 3 19.129 -37.532 -5.158 1 57.42 ? C4' MTA 701 A 1 
HETATM 5 O O4' MTA . . . C 3 18.008 -36.618 -5.145 1 56.88 ? O4' MTA 701 A 1 
HETATM 6 C C2' MTA . . . C 3 17.595 -38.083 -3.386 1 56.98 ? C2' MTA 701 A 1 
HETATM 7 O O2' MTA . . . C 3 17.47 -38.167 -1.983 1 56.99 ? O2' MTA 701 A 1 
HETATM 8 C C3' MTA . . . C 3 19.021 -38.359 -3.872 1 57.1 ? C3' MTA 701 A 1 
HETATM 9 O O3' MTA . . . C 3 19.988 -37.928 -2.923 1 56.47 ? O3' MTA 701 A 1 
HETATM 10 C C1' MTA . . . C 3 17.399 -36.655 -3.879 1 56.47 ? C1' MTA 701 A 1 
HETATM 11 N N9 MTA . . . C 3 16.006 -36.253 -4.028 1 55.95 ? N9 MTA 701 A 1 
HETATM 12 C C8 MTA . . . C 3 15.014 -36.948 -4.673 1 55.84 ? C8 MTA 701 A 1 
HETATM 13 N N7 MTA . . . C 3 13.857 -36.337 -4.656 1 55.69 ? N7 MTA 701 A 1 
HETATM 14 C C5 MTA . . . C 3 14.099 -35.161 -3.962 1 56.01 ? C5 MTA 701 A 1 
HETATM 15 C C6 MTA . . . C 3 13.266 -34.08 -3.61 1 56.3 ? C6 MTA 701 A 1 
HETATM 16 N N6 MTA . . . C 3 11.978 -34.007 -3.931 1 56.35 ? N6 MTA 701 A 1 
HETATM 17 N N1 MTA . . . C 3 13.827 -33.057 -2.921 1 56.05 ? N1 MTA 701 A 1 
HETATM 18 C C2 MTA . . . C 3 15.128 -33.134 -2.608 1 56.17 ? C2 MTA 701 A 1 
HETATM 19 N N3 MTA . . . C 3 16.003 -34.098 -2.882 1 55.85 ? N3 MTA 701 A 1 
HETATM 20 C C4 MTA . . . C 3 15.423 -35.096 -3.57 1 56 ? C4 MTA 701 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#