data_8VEY # _model_server_result.job_id AmdiwTWRGhbHMTpbzMVh9w _model_server_result.datetime_utc '2024-11-08 13:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 8VEY # _exptl.entry_id 8VEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VEY _cell.length_a 102.31 _cell.length_b 136.74 _cell.length_c 177.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 N N N ? 5 O N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 338 n n C1 C2 PEG sing 339 n n C1 H11 PEG sing 340 n n C1 H12 PEG sing 341 n n O1 HO1 PEG sing 342 n n C2 O2 PEG sing 343 n n C2 H21 PEG sing 344 n n C2 H22 PEG sing 345 n n O2 C3 PEG sing 346 n n C3 C4 PEG sing 347 n n C3 H31 PEG sing 348 n n C3 H32 PEG sing 349 n n C4 O4 PEG sing 350 n n C4 H41 PEG sing 351 n n C4 H42 PEG sing 352 n n O4 HO4 PEG sing 353 n n # _atom_sites.entry_id 8VEY _atom_sites.fract_transf_matrix[1][1] 0.009774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1AAV A 1 702 1 A1AAV LIG . E 5 PEG A 1 703 2 PEG PEG . F 5 PEG A 1 704 4 PEG PEG . G 6 EDO A 1 705 1 EDO EDO . H 7 CL A 1 706 1 CL CL . I 7 CL A 1 707 2 CL CL . J 7 CL A 1 708 3 CL CL . K 7 CL A 1 709 4 CL CL . L 7 CL A 1 710 5 CL CL . M 7 CL A 1 711 6 CL CL . N 5 PEG B 1 401 1 PEG PEG . O 5 PEG B 1 402 3 PEG PEG . P 6 EDO B 1 403 2 EDO EDO . Q 8 HOH A 1 801 96 HOH HOH . Q 8 HOH A 2 802 93 HOH HOH . Q 8 HOH A 3 803 11 HOH HOH . Q 8 HOH A 4 804 35 HOH HOH . Q 8 HOH A 5 805 39 HOH HOH . Q 8 HOH A 6 806 88 HOH HOH . Q 8 HOH A 7 807 140 HOH HOH . Q 8 HOH A 8 808 91 HOH HOH . Q 8 HOH A 9 809 22 HOH HOH . Q 8 HOH A 10 810 118 HOH HOH . Q 8 HOH A 11 811 98 HOH HOH . Q 8 HOH A 12 812 3 HOH HOH . Q 8 HOH A 13 813 84 HOH HOH . Q 8 HOH A 14 814 85 HOH HOH . Q 8 HOH A 15 815 62 HOH HOH . Q 8 HOH A 16 816 104 HOH HOH . Q 8 HOH A 17 817 23 HOH HOH . Q 8 HOH A 18 818 120 HOH HOH . Q 8 HOH A 19 819 34 HOH HOH . Q 8 HOH A 20 820 131 HOH HOH . Q 8 HOH A 21 821 112 HOH HOH . Q 8 HOH A 22 822 152 HOH HOH . Q 8 HOH A 23 823 145 HOH HOH . Q 8 HOH A 24 824 109 HOH HOH . Q 8 HOH A 25 825 148 HOH HOH . Q 8 HOH A 26 826 95 HOH HOH . Q 8 HOH A 27 827 49 HOH HOH . Q 8 HOH A 28 828 25 HOH HOH . Q 8 HOH A 29 829 2 HOH HOH . Q 8 HOH A 30 830 99 HOH HOH . Q 8 HOH A 31 831 18 HOH HOH . Q 8 HOH A 32 832 65 HOH HOH . Q 8 HOH A 33 833 55 HOH HOH . Q 8 HOH A 34 834 57 HOH HOH . Q 8 HOH A 35 835 79 HOH HOH . Q 8 HOH A 36 836 44 HOH HOH . Q 8 HOH A 37 837 77 HOH HOH . Q 8 HOH A 38 838 171 HOH HOH . Q 8 HOH A 39 839 50 HOH HOH . Q 8 HOH A 40 840 10 HOH HOH . Q 8 HOH A 41 841 72 HOH HOH . Q 8 HOH A 42 842 134 HOH HOH . Q 8 HOH A 43 843 103 HOH HOH . Q 8 HOH A 44 844 166 HOH HOH . Q 8 HOH A 45 845 100 HOH HOH . Q 8 HOH A 46 846 37 HOH HOH . Q 8 HOH A 47 847 174 HOH HOH . Q 8 HOH A 48 848 45 HOH HOH . Q 8 HOH A 49 849 159 HOH HOH . Q 8 HOH A 50 850 68 HOH HOH . Q 8 HOH A 51 851 63 HOH HOH . Q 8 HOH A 52 852 181 HOH HOH . Q 8 HOH A 53 853 20 HOH HOH . Q 8 HOH A 54 854 157 HOH HOH . Q 8 HOH A 55 855 158 HOH HOH . Q 8 HOH A 56 856 128 HOH HOH . Q 8 HOH A 57 857 4 HOH HOH . Q 8 HOH A 58 858 110 HOH HOH . Q 8 HOH A 59 859 52 HOH HOH . Q 8 HOH A 60 860 116 HOH HOH . Q 8 HOH A 61 861 24 HOH HOH . Q 8 HOH A 62 862 43 HOH HOH . Q 8 HOH A 63 863 60 HOH HOH . Q 8 HOH A 64 864 113 HOH HOH . Q 8 HOH A 65 865 9 HOH HOH . Q 8 HOH A 66 866 151 HOH HOH . Q 8 HOH A 67 867 40 HOH HOH . Q 8 HOH A 68 868 107 HOH HOH . Q 8 HOH A 69 869 80 HOH HOH . Q 8 HOH A 70 870 177 HOH HOH . Q 8 HOH A 71 871 47 HOH HOH . Q 8 HOH A 72 872 105 HOH HOH . Q 8 HOH A 73 873 71 HOH HOH . Q 8 HOH A 74 874 30 HOH HOH . Q 8 HOH A 75 875 147 HOH HOH . Q 8 HOH A 76 876 78 HOH HOH . Q 8 HOH A 77 877 137 HOH HOH . Q 8 HOH A 78 878 136 HOH HOH . Q 8 HOH A 79 879 26 HOH HOH . Q 8 HOH A 80 880 66 HOH HOH . Q 8 HOH A 81 881 106 HOH HOH . Q 8 HOH A 82 882 48 HOH HOH . Q 8 HOH A 83 883 38 HOH HOH . Q 8 HOH A 84 884 108 HOH HOH . Q 8 HOH A 85 885 144 HOH HOH . Q 8 HOH A 86 886 7 HOH HOH . Q 8 HOH A 87 887 16 HOH HOH . Q 8 HOH A 88 888 94 HOH HOH . Q 8 HOH A 89 889 14 HOH HOH . Q 8 HOH A 90 890 70 HOH HOH . Q 8 HOH A 91 891 143 HOH HOH . Q 8 HOH A 92 892 82 HOH HOH . Q 8 HOH A 93 893 56 HOH HOH . Q 8 HOH A 94 894 53 HOH HOH . Q 8 HOH A 95 895 163 HOH HOH . Q 8 HOH A 96 896 115 HOH HOH . Q 8 HOH A 97 897 153 HOH HOH . Q 8 HOH A 98 898 74 HOH HOH . Q 8 HOH A 99 899 92 HOH HOH . Q 8 HOH A 100 900 124 HOH HOH . Q 8 HOH A 101 901 75 HOH HOH . Q 8 HOH A 102 902 141 HOH HOH . Q 8 HOH A 103 903 17 HOH HOH . Q 8 HOH A 104 904 97 HOH HOH . Q 8 HOH A 105 905 41 HOH HOH . Q 8 HOH A 106 906 33 HOH HOH . Q 8 HOH A 107 907 46 HOH HOH . Q 8 HOH A 108 908 155 HOH HOH . Q 8 HOH A 109 909 162 HOH HOH . Q 8 HOH A 110 910 61 HOH HOH . Q 8 HOH A 111 911 146 HOH HOH . Q 8 HOH A 112 912 89 HOH HOH . Q 8 HOH A 113 913 86 HOH HOH . Q 8 HOH A 114 914 27 HOH HOH . Q 8 HOH A 115 915 54 HOH HOH . Q 8 HOH A 116 916 83 HOH HOH . Q 8 HOH A 117 917 149 HOH HOH . Q 8 HOH A 118 918 29 HOH HOH . Q 8 HOH A 119 919 150 HOH HOH . Q 8 HOH A 120 920 31 HOH HOH . Q 8 HOH A 121 921 114 HOH HOH . Q 8 HOH A 122 922 64 HOH HOH . Q 8 HOH A 123 923 123 HOH HOH . Q 8 HOH A 124 924 111 HOH HOH . Q 8 HOH A 125 925 8 HOH HOH . Q 8 HOH A 126 926 135 HOH HOH . Q 8 HOH A 127 927 19 HOH HOH . Q 8 HOH A 128 928 130 HOH HOH . Q 8 HOH A 129 929 125 HOH HOH . Q 8 HOH A 130 930 15 HOH HOH . Q 8 HOH A 131 931 13 HOH HOH . Q 8 HOH A 132 932 102 HOH HOH . Q 8 HOH A 133 933 32 HOH HOH . Q 8 HOH A 134 934 165 HOH HOH . Q 8 HOH A 135 935 126 HOH HOH . Q 8 HOH A 136 936 133 HOH HOH . Q 8 HOH A 137 937 121 HOH HOH . Q 8 HOH A 138 938 142 HOH HOH . Q 8 HOH A 139 939 161 HOH HOH . Q 8 HOH A 140 940 132 HOH HOH . Q 8 HOH A 141 941 160 HOH HOH . Q 8 HOH A 142 942 21 HOH HOH . Q 8 HOH A 143 943 139 HOH HOH . Q 8 HOH A 144 944 176 HOH HOH . Q 8 HOH A 145 945 154 HOH HOH . Q 8 HOH A 146 946 129 HOH HOH . Q 8 HOH A 147 947 127 HOH HOH . Q 8 HOH A 148 948 119 HOH HOH . Q 8 HOH A 149 949 156 HOH HOH . Q 8 HOH A 150 950 169 HOH HOH . Q 8 HOH A 151 951 168 HOH HOH . Q 8 HOH A 152 952 122 HOH HOH . Q 8 HOH A 153 953 170 HOH HOH . Q 8 HOH A 154 954 164 HOH HOH . Q 8 HOH A 155 955 173 HOH HOH . R 8 HOH B 1 501 1 HOH HOH . R 8 HOH B 2 502 179 HOH HOH . R 8 HOH B 3 503 90 HOH HOH . R 8 HOH B 4 504 59 HOH HOH . R 8 HOH B 5 505 167 HOH HOH . R 8 HOH B 6 506 6 HOH HOH . R 8 HOH B 7 507 178 HOH HOH . R 8 HOH B 8 508 138 HOH HOH . R 8 HOH B 9 509 58 HOH HOH . R 8 HOH B 10 510 73 HOH HOH . R 8 HOH B 11 511 87 HOH HOH . R 8 HOH B 12 512 101 HOH HOH . R 8 HOH B 13 513 51 HOH HOH . R 8 HOH B 14 514 76 HOH HOH . R 8 HOH B 15 515 42 HOH HOH . R 8 HOH B 16 516 81 HOH HOH . R 8 HOH B 17 517 12 HOH HOH . R 8 HOH B 18 518 28 HOH HOH . R 8 HOH B 19 519 117 HOH HOH . R 8 HOH B 20 520 5 HOH HOH . R 8 HOH B 21 521 67 HOH HOH . R 8 HOH B 22 522 69 HOH HOH . R 8 HOH B 23 523 36 HOH HOH . R 8 HOH B 24 524 180 HOH HOH . R 8 HOH B 25 525 175 HOH HOH . R 8 HOH B 26 526 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 5 30.831 -44.6 2.449 1 78.56 ? C1 PEG 704 A 1 HETATM 2 O O1 PEG . . . F 5 32.199 -44.358 2.187 1 78.3 ? O1 PEG 704 A 1 HETATM 3 C C2 PEG . . . F 5 30.577 -46.009 2.885 1 78.85 ? C2 PEG 704 A 1 HETATM 4 O O2 PEG . . . F 5 29.176 -46.269 2.939 1 78.73 ? O2 PEG 704 A 1 HETATM 5 C C3 PEG . . . F 5 28.802 -47.185 3.967 1 76.95 ? C3 PEG 704 A 1 HETATM 6 C C4 PEG . . . F 5 27.711 -48.1 3.487 1 76.26 ? C4 PEG 704 A 1 HETATM 7 O O4 PEG . . . F 5 26.553 -47.403 3.068 1 74.64 ? O4 PEG 704 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #