data_8VFO # _model_server_result.job_id qlWwOgx2wsARcjpjRfe05Q _model_server_result.datetime_utc '2024-11-12 21:03:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8VFO # _exptl.entry_id 8VFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VFO _cell.length_a 80.588 _cell.length_b 80.588 _cell.length_c 40.123 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 8VFO _atom_sites.fract_transf_matrix[1][1] 0.012409 _atom_sites.fract_transf_matrix[1][2] 0.007164 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 201 201 CIT CIT . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . C 3 HOH A 51 351 351 HOH HOH . C 3 HOH A 52 352 352 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . C 3 HOH A 57 357 357 HOH HOH . C 3 HOH A 58 358 358 HOH HOH . C 3 HOH A 59 359 359 HOH HOH . C 3 HOH A 60 360 360 HOH HOH . C 3 HOH A 61 361 361 HOH HOH . C 3 HOH A 62 362 362 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 364 HOH HOH . C 3 HOH A 65 365 365 HOH HOH . C 3 HOH A 66 366 366 HOH HOH . C 3 HOH A 67 367 367 HOH HOH . C 3 HOH A 68 368 368 HOH HOH . C 3 HOH A 69 369 369 HOH HOH . C 3 HOH A 70 370 370 HOH HOH . C 3 HOH A 71 371 371 HOH HOH . C 3 HOH A 72 372 372 HOH HOH . C 3 HOH A 73 373 373 HOH HOH . C 3 HOH A 74 374 374 HOH HOH . C 3 HOH A 75 375 375 HOH HOH . C 3 HOH A 76 376 376 HOH HOH . C 3 HOH A 77 377 377 HOH HOH . C 3 HOH A 78 378 378 HOH HOH . C 3 HOH A 79 379 379 HOH HOH . C 3 HOH A 80 380 380 HOH HOH . C 3 HOH A 81 381 381 HOH HOH . C 3 HOH A 82 382 382 HOH HOH . C 3 HOH A 83 383 383 HOH HOH . C 3 HOH A 84 384 384 HOH HOH . C 3 HOH A 85 385 385 HOH HOH . C 3 HOH A 86 386 386 HOH HOH . C 3 HOH A 87 387 387 HOH HOH . C 3 HOH A 88 388 388 HOH HOH . C 3 HOH A 89 389 389 HOH HOH . C 3 HOH A 90 390 390 HOH HOH . C 3 HOH A 91 391 391 HOH HOH . C 3 HOH A 92 392 392 HOH HOH . C 3 HOH A 93 393 393 HOH HOH . C 3 HOH A 94 394 394 HOH HOH . C 3 HOH A 95 395 395 HOH HOH . C 3 HOH A 96 396 396 HOH HOH . C 3 HOH A 97 397 397 HOH HOH . C 3 HOH A 98 398 398 HOH HOH . C 3 HOH A 99 399 399 HOH HOH . C 3 HOH A 100 400 400 HOH HOH . C 3 HOH A 101 401 401 HOH HOH . C 3 HOH A 102 402 402 HOH HOH . C 3 HOH A 103 403 403 HOH HOH . C 3 HOH A 104 404 404 HOH HOH . C 3 HOH A 105 405 405 HOH HOH . C 3 HOH A 106 406 406 HOH HOH . C 3 HOH A 107 407 407 HOH HOH . C 3 HOH A 108 408 408 HOH HOH . C 3 HOH A 109 409 409 HOH HOH . C 3 HOH A 110 410 410 HOH HOH . C 3 HOH A 111 411 411 HOH HOH . C 3 HOH A 112 412 412 HOH HOH . C 3 HOH A 113 413 413 HOH HOH . C 3 HOH A 114 414 414 HOH HOH . C 3 HOH A 115 415 415 HOH HOH . C 3 HOH A 116 416 416 HOH HOH . C 3 HOH A 117 417 417 HOH HOH . C 3 HOH A 118 418 418 HOH HOH . C 3 HOH A 119 419 419 HOH HOH . C 3 HOH A 120 420 420 HOH HOH . C 3 HOH A 121 421 421 HOH HOH . C 3 HOH A 122 422 422 HOH HOH . C 3 HOH A 123 423 423 HOH HOH . C 3 HOH A 124 424 424 HOH HOH . C 3 HOH A 125 425 425 HOH HOH . C 3 HOH A 126 426 426 HOH HOH . C 3 HOH A 127 427 427 HOH HOH . C 3 HOH A 128 428 428 HOH HOH . C 3 HOH A 129 429 429 HOH HOH . C 3 HOH A 130 430 430 HOH HOH . C 3 HOH A 131 431 431 HOH HOH . C 3 HOH A 132 432 432 HOH HOH . C 3 HOH A 133 433 433 HOH HOH . C 3 HOH A 134 434 434 HOH HOH . C 3 HOH A 135 435 435 HOH HOH . C 3 HOH A 136 436 436 HOH HOH . C 3 HOH A 137 437 437 HOH HOH . C 3 HOH A 138 438 438 HOH HOH . C 3 HOH A 139 439 439 HOH HOH . C 3 HOH A 140 440 440 HOH HOH . C 3 HOH A 141 441 441 HOH HOH . C 3 HOH A 142 442 442 HOH HOH . C 3 HOH A 143 443 443 HOH HOH . C 3 HOH A 144 444 445 HOH HOH . C 3 HOH A 145 445 444 HOH HOH . C 3 HOH A 146 446 446 HOH HOH . C 3 HOH A 147 447 447 HOH HOH . C 3 HOH A 148 448 448 HOH HOH . C 3 HOH A 149 449 449 HOH HOH . C 3 HOH A 150 450 450 HOH HOH . C 3 HOH A 151 451 451 HOH HOH . C 3 HOH A 152 452 452 HOH HOH . C 3 HOH A 153 453 453 HOH HOH . C 3 HOH A 154 454 454 HOH HOH . C 3 HOH A 155 455 455 HOH HOH . C 3 HOH A 156 456 456 HOH HOH . C 3 HOH A 157 457 457 HOH HOH . C 3 HOH A 158 458 458 HOH HOH . C 3 HOH A 159 459 459 HOH HOH . C 3 HOH A 160 460 460 HOH HOH . C 3 HOH A 161 461 461 HOH HOH . C 3 HOH A 162 462 462 HOH HOH . C 3 HOH A 163 463 463 HOH HOH . C 3 HOH A 164 464 464 HOH HOH . C 3 HOH A 165 465 465 HOH HOH . C 3 HOH A 166 466 466 HOH HOH . C 3 HOH A 167 467 467 HOH HOH . C 3 HOH A 168 468 468 HOH HOH . C 3 HOH A 169 469 469 HOH HOH . C 3 HOH A 170 470 470 HOH HOH . C 3 HOH A 171 471 471 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 -17.817 2.533 -4.689 1 15.1 ? C1 CIT 201 A 1 HETATM 2 O O1 CIT . . . B 2 -17.975 1.812 -5.709 1 17.46 ? O1 CIT 201 A 1 HETATM 3 O O2 CIT . . . B 2 -18.486 2.407 -3.624 1 20.48 ? O2 CIT 201 A 1 HETATM 4 C C2 CIT . . . B 2 -16.654 3.551 -4.613 1 14.08 ? C2 CIT 201 A 1 HETATM 5 C C3 CIT . . . B 2 -15.449 3.078 -5.517 1 12.36 ? C3 CIT 201 A 1 HETATM 6 O O7 CIT . . . B 2 -15.925 2.948 -6.875 1 12.15 ? O7 CIT 201 A 1 HETATM 7 C C4 CIT . . . B 2 -14.352 4.115 -5.487 1 12.48 ? C4 CIT 201 A 1 HETATM 8 C C5 CIT . . . B 2 -14.727 5.514 -5.918 1 15.13 ? C5 CIT 201 A 1 HETATM 9 O O3 CIT . . . B 2 -14.708 5.798 -7.08 1 16.95 ? O3 CIT 201 A 1 HETATM 10 O O4 CIT . . . B 2 -14.945 6.329 -5.037 1 17.35 ? O4 CIT 201 A 1 HETATM 11 C C6 CIT . . . B 2 -14.848 1.799 -4.959 1 13.37 ? C6 CIT 201 A 1 HETATM 12 O O5 CIT . . . B 2 -14.392 1.015 -5.82 1 10.96 ? O5 CIT 201 A 1 HETATM 13 O O6 CIT . . . B 2 -14.933 1.56 -3.755 1 13.26 ? O6 CIT 201 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #