data_8VFP # _model_server_result.job_id fnxpAhAycurmRnt94-4Akw _model_server_result.datetime_utc '2025-01-10 08:51:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8VFP # _exptl.entry_id 8VFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.148 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-METHYLBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.19 _cell.angle_gamma 90 _cell.entry_id 8VFP _cell.length_a 44.386 _cell.length_b 51.495 _cell.length_c 78.639 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 359 A CYS 358 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 C FE HEM . A HEM 502 1_555 D O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'C8 H8 O2' _chem_comp.formula_weight 136.148 _chem_comp.id 4MA _chem_comp.mon_nstd_flag . _chem_comp.name '4-METHYLBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'P-METHYLBENZOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C7 4MA sing 1 n n O1 HO1 4MA sing 2 n n C7 O2 4MA doub 3 n n C7 C1 4MA sing 4 n n C1 C2 4MA sing 5 n y C1 C6 4MA doub 6 n y C2 C3 4MA doub 7 n y C2 H2 4MA sing 8 n n C3 C4 4MA sing 9 n y C3 H3 4MA sing 10 n n C4 C8 4MA sing 11 n n C4 C5 4MA doub 12 n y C8 H81 4MA sing 13 n n C8 H82 4MA sing 14 n n C8 H83 4MA sing 15 n n C5 C6 4MA sing 16 n y C5 H5 4MA sing 17 n n C6 H6 4MA sing 18 n n # _atom_sites.entry_id 8VFP _atom_sites.fract_transf_matrix[1][1] 0.02253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001256 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4MA A 1 501 1 4MA 4MA . C 3 HEM A 1 502 501 HEM HEM . D 4 HOH A 1 601 62 HOH HOH . D 4 HOH A 2 602 49 HOH HOH . D 4 HOH A 3 603 2 HOH HOH . D 4 HOH A 4 604 46 HOH HOH . D 4 HOH A 5 605 39 HOH HOH . D 4 HOH A 6 606 50 HOH HOH . D 4 HOH A 7 607 56 HOH HOH . D 4 HOH A 8 608 1 HOH HOH . D 4 HOH A 9 609 15 HOH HOH . D 4 HOH A 10 610 23 HOH HOH . D 4 HOH A 11 611 3 HOH HOH . D 4 HOH A 12 612 47 HOH HOH . D 4 HOH A 13 613 59 HOH HOH . D 4 HOH A 14 614 13 HOH HOH . D 4 HOH A 15 615 48 HOH HOH . D 4 HOH A 16 616 32 HOH HOH . D 4 HOH A 17 617 10 HOH HOH . D 4 HOH A 18 618 60 HOH HOH . D 4 HOH A 19 619 33 HOH HOH . D 4 HOH A 20 620 51 HOH HOH . D 4 HOH A 21 621 35 HOH HOH . D 4 HOH A 22 622 28 HOH HOH . D 4 HOH A 23 623 42 HOH HOH . D 4 HOH A 24 624 43 HOH HOH . D 4 HOH A 25 625 36 HOH HOH . D 4 HOH A 26 626 24 HOH HOH . D 4 HOH A 27 627 58 HOH HOH . D 4 HOH A 28 628 16 HOH HOH . D 4 HOH A 29 629 6 HOH HOH . D 4 HOH A 30 630 9 HOH HOH . D 4 HOH A 31 631 4 HOH HOH . D 4 HOH A 32 632 38 HOH HOH . D 4 HOH A 33 633 52 HOH HOH . D 4 HOH A 34 634 12 HOH HOH . D 4 HOH A 35 635 30 HOH HOH . D 4 HOH A 36 636 53 HOH HOH . D 4 HOH A 37 637 5 HOH HOH . D 4 HOH A 38 638 37 HOH HOH . D 4 HOH A 39 639 14 HOH HOH . D 4 HOH A 40 640 22 HOH HOH . D 4 HOH A 41 641 17 HOH HOH . D 4 HOH A 42 642 55 HOH HOH . D 4 HOH A 43 643 31 HOH HOH . D 4 HOH A 44 644 19 HOH HOH . D 4 HOH A 45 645 29 HOH HOH . D 4 HOH A 46 646 34 HOH HOH . D 4 HOH A 47 647 18 HOH HOH . D 4 HOH A 48 648 57 HOH HOH . D 4 HOH A 49 649 61 HOH HOH . D 4 HOH A 50 650 63 HOH HOH . D 4 HOH A 51 651 70 HOH HOH . D 4 HOH A 52 652 44 HOH HOH . D 4 HOH A 53 653 25 HOH HOH . D 4 HOH A 54 654 8 HOH HOH . D 4 HOH A 55 655 21 HOH HOH . D 4 HOH A 56 656 20 HOH HOH . D 4 HOH A 57 657 7 HOH HOH . D 4 HOH A 58 658 45 HOH HOH . D 4 HOH A 59 659 64 HOH HOH . D 4 HOH A 60 660 65 HOH HOH . D 4 HOH A 61 661 11 HOH HOH . D 4 HOH A 62 662 40 HOH HOH . D 4 HOH A 63 663 76 HOH HOH . D 4 HOH A 64 664 54 HOH HOH . D 4 HOH A 65 665 67 HOH HOH . D 4 HOH A 66 666 41 HOH HOH . D 4 HOH A 67 667 75 HOH HOH . D 4 HOH A 68 668 66 HOH HOH . D 4 HOH A 69 669 72 HOH HOH . D 4 HOH A 70 670 26 HOH HOH . D 4 HOH A 71 671 68 HOH HOH . D 4 HOH A 72 672 74 HOH HOH . D 4 HOH A 73 673 27 HOH HOH . D 4 HOH A 74 674 77 HOH HOH . D 4 HOH A 75 675 71 HOH HOH . D 4 HOH A 76 676 73 HOH HOH . D 4 HOH A 77 677 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4MA . . . B 2 5.5 5.689 17.255 0.97 29.08 ? O1 4MA 501 A 1 HETATM 2 C C7 4MA . . . B 2 4.423 5.075 17.04 0.97 28.7 ? C7 4MA 501 A 1 HETATM 3 O O2 4MA . . . B 2 3.48 5.641 16.422 0.97 27.8 -1 O2 4MA 501 A 1 HETATM 4 C C1 4MA . . . B 2 4.279 3.64 17.541 0.97 28.13 ? C1 4MA 501 A 1 HETATM 5 C C2 4MA . . . B 2 5.095 3.184 18.566 0.97 26.92 ? C2 4MA 501 A 1 HETATM 6 C C3 4MA . . . B 2 4.973 1.883 19.03 0.97 26.53 ? C3 4MA 501 A 1 HETATM 7 C C4 4MA . . . B 2 4.029 1.04 18.465 0.97 27.49 ? C4 4MA 501 A 1 HETATM 8 C C8 4MA . . . B 2 3.865 -0.397 18.953 0.97 26.05 ? C8 4MA 501 A 1 HETATM 9 C C5 4MA . . . B 2 3.217 1.498 17.443 0.97 28.35 ? C5 4MA 501 A 1 HETATM 10 C C6 4MA . . . B 2 3.338 2.796 16.977 0.97 27.35 ? C6 4MA 501 A 1 # _model_server_stats.io_time_ms 110 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #