data_8VFR # _model_server_result.job_id 6FtCC-mPiqP5dRivWjHZvw _model_server_result.datetime_utc '2024-11-08 01:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8VFR # _exptl.entry_id 8VFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.148 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-METHYLBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.94 _cell.angle_gamma 90 _cell.entry_id 8VFR _cell.length_a 44.213 _cell.length_b 51.268 _cell.length_c 78.417 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 359 A CYS 358 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 F O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'C8 H8 O2' _chem_comp.formula_weight 136.148 _chem_comp.id 4MA _chem_comp.mon_nstd_flag . _chem_comp.name '4-METHYLBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'P-METHYLBENZOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C7 4MA sing 1 n n O1 HO1 4MA sing 2 n n C7 O2 4MA doub 3 n n C7 C1 4MA sing 4 n n C1 C2 4MA sing 5 n y C1 C6 4MA doub 6 n y C2 C3 4MA doub 7 n y C2 H2 4MA sing 8 n n C3 C4 4MA sing 9 n y C3 H3 4MA sing 10 n n C4 C8 4MA sing 11 n n C4 C5 4MA doub 12 n y C8 H81 4MA sing 13 n n C8 H82 4MA sing 14 n n C8 H83 4MA sing 15 n n C5 C6 4MA sing 16 n y C5 H5 4MA sing 17 n n C6 H6 4MA sing 18 n n # _atom_sites.entry_id 8VFR _atom_sites.fract_transf_matrix[1][1] 0.022618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001161 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 4MA A 1 502 1 4MA 4MA . D 4 E5X A 1 503 1 E5X E5X . E 5 CL A 1 504 1 CL CL . F 6 HOH A 1 601 219 HOH HOH . F 6 HOH A 2 602 1 HOH HOH . F 6 HOH A 3 603 93 HOH HOH . F 6 HOH A 4 604 241 HOH HOH . F 6 HOH A 5 605 116 HOH HOH . F 6 HOH A 6 606 200 HOH HOH . F 6 HOH A 7 607 25 HOH HOH . F 6 HOH A 8 608 156 HOH HOH . F 6 HOH A 9 609 207 HOH HOH . F 6 HOH A 10 610 210 HOH HOH . F 6 HOH A 11 611 14 HOH HOH . F 6 HOH A 12 612 128 HOH HOH . F 6 HOH A 13 613 159 HOH HOH . F 6 HOH A 14 614 8 HOH HOH . F 6 HOH A 15 615 177 HOH HOH . F 6 HOH A 16 616 49 HOH HOH . F 6 HOH A 17 617 109 HOH HOH . F 6 HOH A 18 618 22 HOH HOH . F 6 HOH A 19 619 202 HOH HOH . F 6 HOH A 20 620 188 HOH HOH . F 6 HOH A 21 621 98 HOH HOH . F 6 HOH A 22 622 148 HOH HOH . F 6 HOH A 23 623 10 HOH HOH . F 6 HOH A 24 624 74 HOH HOH . F 6 HOH A 25 625 137 HOH HOH . F 6 HOH A 26 626 81 HOH HOH . F 6 HOH A 27 627 107 HOH HOH . F 6 HOH A 28 628 83 HOH HOH . F 6 HOH A 29 629 30 HOH HOH . F 6 HOH A 30 630 44 HOH HOH . F 6 HOH A 31 631 59 HOH HOH . F 6 HOH A 32 632 136 HOH HOH . F 6 HOH A 33 633 43 HOH HOH . F 6 HOH A 34 634 3 HOH HOH . F 6 HOH A 35 635 223 HOH HOH . F 6 HOH A 36 636 57 HOH HOH . F 6 HOH A 37 637 18 HOH HOH . F 6 HOH A 38 638 257 HOH HOH . F 6 HOH A 39 639 82 HOH HOH . F 6 HOH A 40 640 52 HOH HOH . F 6 HOH A 41 641 38 HOH HOH . F 6 HOH A 42 642 150 HOH HOH . F 6 HOH A 43 643 79 HOH HOH . F 6 HOH A 44 644 28 HOH HOH . F 6 HOH A 45 645 34 HOH HOH . F 6 HOH A 46 646 100 HOH HOH . F 6 HOH A 47 647 7 HOH HOH . F 6 HOH A 48 648 66 HOH HOH . F 6 HOH A 49 649 114 HOH HOH . F 6 HOH A 50 650 37 HOH HOH . F 6 HOH A 51 651 21 HOH HOH . F 6 HOH A 52 652 12 HOH HOH . F 6 HOH A 53 653 158 HOH HOH . F 6 HOH A 54 654 149 HOH HOH . F 6 HOH A 55 655 117 HOH HOH . F 6 HOH A 56 656 53 HOH HOH . F 6 HOH A 57 657 72 HOH HOH . F 6 HOH A 58 658 50 HOH HOH . F 6 HOH A 59 659 6 HOH HOH . F 6 HOH A 60 660 153 HOH HOH . F 6 HOH A 61 661 15 HOH HOH . F 6 HOH A 62 662 213 HOH HOH . F 6 HOH A 63 663 56 HOH HOH . F 6 HOH A 64 664 76 HOH HOH . F 6 HOH A 65 665 39 HOH HOH . F 6 HOH A 66 666 27 HOH HOH . F 6 HOH A 67 667 9 HOH HOH . F 6 HOH A 68 668 68 HOH HOH . F 6 HOH A 69 669 138 HOH HOH . F 6 HOH A 70 670 262 HOH HOH . F 6 HOH A 71 671 144 HOH HOH . F 6 HOH A 72 672 233 HOH HOH . F 6 HOH A 73 673 115 HOH HOH . F 6 HOH A 74 674 55 HOH HOH . F 6 HOH A 75 675 204 HOH HOH . F 6 HOH A 76 676 162 HOH HOH . F 6 HOH A 77 677 63 HOH HOH . F 6 HOH A 78 678 54 HOH HOH . F 6 HOH A 79 679 253 HOH HOH . F 6 HOH A 80 680 139 HOH HOH . F 6 HOH A 81 681 33 HOH HOH . F 6 HOH A 82 682 110 HOH HOH . F 6 HOH A 83 683 140 HOH HOH . F 6 HOH A 84 684 71 HOH HOH . F 6 HOH A 85 685 151 HOH HOH . F 6 HOH A 86 686 131 HOH HOH . F 6 HOH A 87 687 2 HOH HOH . F 6 HOH A 88 688 133 HOH HOH . F 6 HOH A 89 689 91 HOH HOH . F 6 HOH A 90 690 101 HOH HOH . F 6 HOH A 91 691 157 HOH HOH . F 6 HOH A 92 692 86 HOH HOH . F 6 HOH A 93 693 45 HOH HOH . F 6 HOH A 94 694 20 HOH HOH . F 6 HOH A 95 695 67 HOH HOH . F 6 HOH A 96 696 80 HOH HOH . F 6 HOH A 97 697 237 HOH HOH . F 6 HOH A 98 698 95 HOH HOH . F 6 HOH A 99 699 24 HOH HOH . F 6 HOH A 100 700 201 HOH HOH . F 6 HOH A 101 701 35 HOH HOH . F 6 HOH A 102 702 206 HOH HOH . F 6 HOH A 103 703 152 HOH HOH . F 6 HOH A 104 704 96 HOH HOH . F 6 HOH A 105 705 84 HOH HOH . F 6 HOH A 106 706 209 HOH HOH . F 6 HOH A 107 707 70 HOH HOH . F 6 HOH A 108 708 122 HOH HOH . F 6 HOH A 109 709 119 HOH HOH . F 6 HOH A 110 710 5 HOH HOH . F 6 HOH A 111 711 146 HOH HOH . F 6 HOH A 112 712 270 HOH HOH . F 6 HOH A 113 713 4 HOH HOH . F 6 HOH A 114 714 255 HOH HOH . F 6 HOH A 115 715 170 HOH HOH . F 6 HOH A 116 716 248 HOH HOH . F 6 HOH A 117 717 16 HOH HOH . F 6 HOH A 118 718 58 HOH HOH . F 6 HOH A 119 719 191 HOH HOH . F 6 HOH A 120 720 190 HOH HOH . F 6 HOH A 121 721 40 HOH HOH . F 6 HOH A 122 722 218 HOH HOH . F 6 HOH A 123 723 240 HOH HOH . F 6 HOH A 124 724 69 HOH HOH . F 6 HOH A 125 725 85 HOH HOH . F 6 HOH A 126 726 111 HOH HOH . F 6 HOH A 127 727 243 HOH HOH . F 6 HOH A 128 728 129 HOH HOH . F 6 HOH A 129 729 29 HOH HOH . F 6 HOH A 130 730 164 HOH HOH . F 6 HOH A 131 731 197 HOH HOH . F 6 HOH A 132 732 13 HOH HOH . F 6 HOH A 133 733 89 HOH HOH . F 6 HOH A 134 734 105 HOH HOH . F 6 HOH A 135 735 141 HOH HOH . F 6 HOH A 136 736 94 HOH HOH . F 6 HOH A 137 737 123 HOH HOH . F 6 HOH A 138 738 163 HOH HOH . F 6 HOH A 139 739 48 HOH HOH . F 6 HOH A 140 740 173 HOH HOH . F 6 HOH A 141 741 78 HOH HOH . F 6 HOH A 142 742 19 HOH HOH . F 6 HOH A 143 743 195 HOH HOH . F 6 HOH A 144 744 228 HOH HOH . F 6 HOH A 145 745 261 HOH HOH . F 6 HOH A 146 746 145 HOH HOH . F 6 HOH A 147 747 103 HOH HOH . F 6 HOH A 148 748 102 HOH HOH . F 6 HOH A 149 749 41 HOH HOH . F 6 HOH A 150 750 60 HOH HOH . F 6 HOH A 151 751 31 HOH HOH . F 6 HOH A 152 752 77 HOH HOH . F 6 HOH A 153 753 62 HOH HOH . F 6 HOH A 154 754 88 HOH HOH . F 6 HOH A 155 755 216 HOH HOH . F 6 HOH A 156 756 155 HOH HOH . F 6 HOH A 157 757 238 HOH HOH . F 6 HOH A 158 758 17 HOH HOH . F 6 HOH A 159 759 174 HOH HOH . F 6 HOH A 160 760 208 HOH HOH . F 6 HOH A 161 761 250 HOH HOH . F 6 HOH A 162 762 126 HOH HOH . F 6 HOH A 163 763 32 HOH HOH . F 6 HOH A 164 764 46 HOH HOH . F 6 HOH A 165 765 75 HOH HOH . F 6 HOH A 166 766 47 HOH HOH . F 6 HOH A 167 767 224 HOH HOH . F 6 HOH A 168 768 134 HOH HOH . F 6 HOH A 169 769 247 HOH HOH . F 6 HOH A 170 770 211 HOH HOH . F 6 HOH A 171 771 23 HOH HOH . F 6 HOH A 172 772 192 HOH HOH . F 6 HOH A 173 773 36 HOH HOH . F 6 HOH A 174 774 167 HOH HOH . F 6 HOH A 175 775 212 HOH HOH . F 6 HOH A 176 776 125 HOH HOH . F 6 HOH A 177 777 11 HOH HOH . F 6 HOH A 178 778 147 HOH HOH . F 6 HOH A 179 779 108 HOH HOH . F 6 HOH A 180 780 127 HOH HOH . F 6 HOH A 181 781 269 HOH HOH . F 6 HOH A 182 782 194 HOH HOH . F 6 HOH A 183 783 182 HOH HOH . F 6 HOH A 184 784 235 HOH HOH . F 6 HOH A 185 785 168 HOH HOH . F 6 HOH A 186 786 26 HOH HOH . F 6 HOH A 187 787 61 HOH HOH . F 6 HOH A 188 788 42 HOH HOH . F 6 HOH A 189 789 92 HOH HOH . F 6 HOH A 190 790 227 HOH HOH . F 6 HOH A 191 791 196 HOH HOH . F 6 HOH A 192 792 265 HOH HOH . F 6 HOH A 193 793 260 HOH HOH . F 6 HOH A 194 794 97 HOH HOH . F 6 HOH A 195 795 193 HOH HOH . F 6 HOH A 196 796 222 HOH HOH . F 6 HOH A 197 797 160 HOH HOH . F 6 HOH A 198 798 106 HOH HOH . F 6 HOH A 199 799 172 HOH HOH . F 6 HOH A 200 800 73 HOH HOH . F 6 HOH A 201 801 246 HOH HOH . F 6 HOH A 202 802 99 HOH HOH . F 6 HOH A 203 803 256 HOH HOH . F 6 HOH A 204 804 118 HOH HOH . F 6 HOH A 205 805 165 HOH HOH . F 6 HOH A 206 806 51 HOH HOH . F 6 HOH A 207 807 230 HOH HOH . F 6 HOH A 208 808 135 HOH HOH . F 6 HOH A 209 809 220 HOH HOH . F 6 HOH A 210 810 242 HOH HOH . F 6 HOH A 211 811 259 HOH HOH . F 6 HOH A 212 812 185 HOH HOH . F 6 HOH A 213 813 90 HOH HOH . F 6 HOH A 214 814 266 HOH HOH . F 6 HOH A 215 815 87 HOH HOH . F 6 HOH A 216 816 124 HOH HOH . F 6 HOH A 217 817 232 HOH HOH . F 6 HOH A 218 818 271 HOH HOH . F 6 HOH A 219 819 234 HOH HOH . F 6 HOH A 220 820 154 HOH HOH . F 6 HOH A 221 821 187 HOH HOH . F 6 HOH A 222 822 245 HOH HOH . F 6 HOH A 223 823 258 HOH HOH . F 6 HOH A 224 824 267 HOH HOH . F 6 HOH A 225 825 214 HOH HOH . F 6 HOH A 226 826 215 HOH HOH . F 6 HOH A 227 827 226 HOH HOH . F 6 HOH A 228 828 221 HOH HOH . F 6 HOH A 229 829 236 HOH HOH . F 6 HOH A 230 830 104 HOH HOH . F 6 HOH A 231 831 130 HOH HOH . F 6 HOH A 232 832 180 HOH HOH . F 6 HOH A 233 833 251 HOH HOH . F 6 HOH A 234 834 249 HOH HOH . F 6 HOH A 235 835 142 HOH HOH . F 6 HOH A 236 836 244 HOH HOH . F 6 HOH A 237 837 203 HOH HOH . F 6 HOH A 238 838 181 HOH HOH . F 6 HOH A 239 839 264 HOH HOH . F 6 HOH A 240 840 171 HOH HOH . F 6 HOH A 241 841 263 HOH HOH . F 6 HOH A 242 842 166 HOH HOH . F 6 HOH A 243 843 178 HOH HOH . F 6 HOH A 244 844 112 HOH HOH . F 6 HOH A 245 845 121 HOH HOH . F 6 HOH A 246 846 198 HOH HOH . F 6 HOH A 247 847 231 HOH HOH . F 6 HOH A 248 848 239 HOH HOH . F 6 HOH A 249 849 113 HOH HOH . F 6 HOH A 250 850 217 HOH HOH . F 6 HOH A 251 851 252 HOH HOH . F 6 HOH A 252 852 169 HOH HOH . F 6 HOH A 253 853 161 HOH HOH . F 6 HOH A 254 854 120 HOH HOH . F 6 HOH A 255 855 199 HOH HOH . F 6 HOH A 256 856 143 HOH HOH . F 6 HOH A 257 857 176 HOH HOH . F 6 HOH A 258 858 186 HOH HOH . F 6 HOH A 259 859 175 HOH HOH . F 6 HOH A 260 860 64 HOH HOH . F 6 HOH A 261 861 179 HOH HOH . F 6 HOH A 262 862 225 HOH HOH . F 6 HOH A 263 863 189 HOH HOH . F 6 HOH A 264 864 183 HOH HOH . F 6 HOH A 265 865 229 HOH HOH . F 6 HOH A 266 866 268 HOH HOH . F 6 HOH A 267 867 184 HOH HOH . F 6 HOH A 268 868 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4MA . A . C 3 5.482 5.738 17.167 0.45 19.57 -1 O1 4MA 502 A 1 HETATM 2 C C7 4MA . A . C 3 4.461 5.052 16.9 0.45 19.45 ? C7 4MA 502 A 1 HETATM 3 O O2 4MA . A . C 3 3.53 5.547 16.213 0.45 18.36 ? O2 4MA 502 A 1 HETATM 4 C C1 4MA . A . C 3 4.344 3.617 17.412 0.45 21.75 ? C1 4MA 502 A 1 HETATM 5 C C2 4MA . A . C 3 3.438 2.752 16.824 0.45 20.02 ? C2 4MA 502 A 1 HETATM 6 C C3 4MA . A . C 3 3.325 1.452 17.285 0.45 23.04 ? C3 4MA 502 A 1 HETATM 7 C C4 4MA . A . C 3 4.118 1.016 18.332 0.45 23.42 ? C4 4MA 502 A 1 HETATM 8 C C8 4MA . A . C 3 3.985 -0.42 18.833 0.45 22.52 ? C8 4MA 502 A 1 HETATM 9 C C5 4MA . A . C 3 5.025 1.882 18.922 0.45 23.22 ? C5 4MA 502 A 1 HETATM 10 C C6 4MA . A . C 3 5.138 3.183 18.461 0.45 22.29 ? C6 4MA 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 10 #