data_8VG8 # _model_server_result.job_id 5OpPgJUUqp73K69BskUF3A _model_server_result.datetime_utc '2025-07-31 02:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8VG8 # _exptl.entry_id 8VG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.224 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(3-carboxyphenyl)pyridine-2,5-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VG8 _cell.length_a 81.952 _cell.length_b 81.952 _cell.length_c 40.804 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H9 N O6' _chem_comp.formula_weight 287.224 _chem_comp.id 7L9 _chem_comp.mon_nstd_flag . _chem_comp.name '4-(3-carboxyphenyl)pyridine-2,5-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAT CAS 7L9 doub 1 n n OAU CAS 7L9 sing 2 n n CAS CAL 7L9 sing 3 n n CAL NAM 7L9 doub 4 n y CAL CAK 7L9 sing 5 n y NAM CAN 7L9 sing 6 n y CAK CAJ 7L9 doub 7 n y CAN CAO 7L9 doub 8 n y CAJ CAO 7L9 sing 9 n y CAJ CAC 7L9 sing 10 n n CAO CAP 7L9 sing 11 n n CAC CAB 7L9 doub 12 n y CAC CAD 7L9 sing 13 n y CAB CAA 7L9 sing 14 n y CAD CAE 7L9 doub 15 n y CAP OAQ 7L9 doub 16 n n CAP OAR 7L9 sing 17 n n CAA CAF 7L9 doub 18 n y CAE CAF 7L9 sing 19 n y CAE CAG 7L9 sing 20 n n OAH CAG 7L9 doub 21 n n CAG OAI 7L9 sing 22 n n OAI H1 7L9 sing 23 n n CAD H2 7L9 sing 24 n n CAF H3 7L9 sing 25 n n CAA H4 7L9 sing 26 n n CAB H5 7L9 sing 27 n n CAK H6 7L9 sing 28 n n OAU H7 7L9 sing 29 n n CAN H8 7L9 sing 30 n n OAR H9 7L9 sing 31 n n # _atom_sites.entry_id 8VG8 _atom_sites.fract_transf_matrix[1][1] 0.012202 _atom_sites.fract_transf_matrix[1][2] 0.007045 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7L9 A 1 201 1 7L9 PDB . C 3 HOH A 1 301 54 HOH HOH . C 3 HOH A 2 302 90 HOH HOH . C 3 HOH A 3 303 58 HOH HOH . C 3 HOH A 4 304 63 HOH HOH . C 3 HOH A 5 305 61 HOH HOH . C 3 HOH A 6 306 77 HOH HOH . C 3 HOH A 7 307 9 HOH HOH . C 3 HOH A 8 308 62 HOH HOH . C 3 HOH A 9 309 14 HOH HOH . C 3 HOH A 10 310 113 HOH HOH . C 3 HOH A 11 311 4 HOH HOH . C 3 HOH A 12 312 18 HOH HOH . C 3 HOH A 13 313 80 HOH HOH . C 3 HOH A 14 314 30 HOH HOH . C 3 HOH A 15 315 17 HOH HOH . C 3 HOH A 16 316 5 HOH HOH . C 3 HOH A 17 317 6 HOH HOH . C 3 HOH A 18 318 29 HOH HOH . C 3 HOH A 19 319 13 HOH HOH . C 3 HOH A 20 320 40 HOH HOH . C 3 HOH A 21 321 82 HOH HOH . C 3 HOH A 22 322 111 HOH HOH . C 3 HOH A 23 323 50 HOH HOH . C 3 HOH A 24 324 45 HOH HOH . C 3 HOH A 25 325 60 HOH HOH . C 3 HOH A 26 326 39 HOH HOH . C 3 HOH A 27 327 37 HOH HOH . C 3 HOH A 28 328 41 HOH HOH . C 3 HOH A 29 329 48 HOH HOH . C 3 HOH A 30 330 81 HOH HOH . C 3 HOH A 31 331 11 HOH HOH . C 3 HOH A 32 332 31 HOH HOH . C 3 HOH A 33 333 67 HOH HOH . C 3 HOH A 34 334 38 HOH HOH . C 3 HOH A 35 335 84 HOH HOH . C 3 HOH A 36 336 23 HOH HOH . C 3 HOH A 37 337 59 HOH HOH . C 3 HOH A 38 338 10 HOH HOH . C 3 HOH A 39 339 9 HOH HOH . C 3 HOH A 40 340 65 HOH HOH . C 3 HOH A 41 341 28 HOH HOH . C 3 HOH A 42 342 89 HOH HOH . C 3 HOH A 43 343 53 HOH HOH . C 3 HOH A 44 344 27 HOH HOH . C 3 HOH A 45 345 8 HOH HOH . C 3 HOH A 46 346 70 HOH HOH . C 3 HOH A 47 347 15 HOH HOH . C 3 HOH A 48 348 34 HOH HOH . C 3 HOH A 49 349 41 HOH HOH . C 3 HOH A 50 350 12 HOH HOH . C 3 HOH A 51 351 22 HOH HOH . C 3 HOH A 52 352 19 HOH HOH . C 3 HOH A 53 353 25 HOH HOH . C 3 HOH A 54 354 2 HOH HOH . C 3 HOH A 55 355 56 HOH HOH . C 3 HOH A 56 356 49 HOH HOH . C 3 HOH A 57 357 92 HOH HOH . C 3 HOH A 58 358 20 HOH HOH . C 3 HOH A 59 359 13 HOH HOH . C 3 HOH A 60 360 24 HOH HOH . C 3 HOH A 61 361 5 HOH HOH . C 3 HOH A 62 362 3 HOH HOH . C 3 HOH A 63 363 14 HOH HOH . C 3 HOH A 64 364 36 HOH HOH . C 3 HOH A 65 365 26 HOH HOH . C 3 HOH A 66 366 57 HOH HOH . C 3 HOH A 67 367 47 HOH HOH . C 3 HOH A 68 368 7 HOH HOH . C 3 HOH A 69 369 22 HOH HOH . C 3 HOH A 70 370 14 HOH HOH . C 3 HOH A 71 371 66 HOH HOH . C 3 HOH A 72 372 35 HOH HOH . C 3 HOH A 73 373 52 HOH HOH . C 3 HOH A 74 374 117 HOH HOH . C 3 HOH A 75 375 64 HOH HOH . C 3 HOH A 76 376 40 HOH HOH . C 3 HOH A 77 377 78 HOH HOH . C 3 HOH A 78 378 3 HOH HOH . C 3 HOH A 79 379 76 HOH HOH . C 3 HOH A 80 380 87 HOH HOH . C 3 HOH A 81 381 86 HOH HOH . C 3 HOH A 82 382 79 HOH HOH . C 3 HOH A 83 383 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAH 7L9 . . . B 2 14.579 -10.65 -26.63 1 53.51 ? OAH 7L9 201 A 1 HETATM 2 C CAG 7L9 . . . B 2 14.598 -11.31 -25.568 1 34.68 ? CAG 7L9 201 A 1 HETATM 3 O OAI 7L9 . . . B 2 14.833 -12.598 -25.552 1 48.12 ? OAI 7L9 201 A 1 HETATM 4 C CAE 7L9 . . . B 2 14.522 -10.586 -24.385 1 40.79 ? CAE 7L9 201 A 1 HETATM 5 C CAD 7L9 . . . B 2 13.572 -11.095 -23.499 1 33.75 ? CAD 7L9 201 A 1 HETATM 6 C CAF 7L9 . . . B 2 15.228 -9.406 -24.084 1 34.93 ? CAF 7L9 201 A 1 HETATM 7 C CAA 7L9 . . . B 2 15.076 -8.774 -22.829 1 33.2 ? CAA 7L9 201 A 1 HETATM 8 C CAB 7L9 . . . B 2 14.092 -9.29 -21.946 1 32.91 ? CAB 7L9 201 A 1 HETATM 9 C CAC 7L9 . . . B 2 13.364 -10.479 -22.253 1 22.06 ? CAC 7L9 201 A 1 HETATM 10 C CAJ 7L9 . . . B 2 12.338 -10.97 -21.351 1 19.51 ? CAJ 7L9 201 A 1 HETATM 11 C CAK 7L9 . . . B 2 11.104 -11.286 -21.945 1 17.59 ? CAK 7L9 201 A 1 HETATM 12 C CAL 7L9 . . . B 2 10.036 -11.687 -21.213 1 14.56 ? CAL 7L9 201 A 1 HETATM 13 C CAS 7L9 . . . B 2 8.768 -12.011 -21.889 1 16.27 ? CAS 7L9 201 A 1 HETATM 14 O OAU 7L9 . . . B 2 7.775 -12.246 -21.176 1 16.9 ? OAU 7L9 201 A 1 HETATM 15 O OAT 7L9 . . . B 2 8.743 -12.233 -23.086 1 19.57 ? OAT 7L9 201 A 1 HETATM 16 N NAM 7L9 . . . B 2 10.078 -11.662 -19.892 1 16.01 ? NAM 7L9 201 A 1 HETATM 17 C CAN 7L9 . . . B 2 11.258 -11.345 -19.27 1 16.95 ? CAN 7L9 201 A 1 HETATM 18 C CAO 7L9 . . . B 2 12.4 -11.007 -19.977 1 16.96 ? CAO 7L9 201 A 1 HETATM 19 C CAP 7L9 . . . B 2 13.624 -10.806 -19.3 1 21.18 ? CAP 7L9 201 A 1 HETATM 20 O OAR 7L9 . . . B 2 13.743 -10.248 -18.252 1 24.65 ? OAR 7L9 201 A 1 HETATM 21 O OAQ 7L9 . . . B 2 14.635 -11.472 -19.682 1 25.86 ? OAQ 7L9 201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #