data_8VGQ # _model_server_result.job_id x2P3-iADNNvgQsuhUsMyxA _model_server_result.datetime_utc '2024-12-11 00:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 8VGQ # _exptl.entry_id 8VGQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VGQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 11 H CYS 11 1_555 B SG CYS 156 H CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 117 H CYS 108 1_555 B SG CYS 158 H CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 149 H CYS 144 1_555 B SG CYS 206 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 21 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 C SG CYS 40 L CYS 40 1_555 C SG CYS 169 L CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 C SG CYS 80 L CYS 80 1_555 C SG CYS 173 L CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 C SG CYS 137 L CYS 134 1_555 C SG CYS 197 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A SG CYS 13 A CYS 12 1_555 D C A1AAW . A A1AAW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 E O1B GDP . A GDP 202 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8VGQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 A1AAW A 1 201 203 A1AAW MKZ . E 5 GDP A 1 202 204 GDP GDP . F 6 MG A 1 203 203 MG MG . G 7 HOH A 1 301 9 HOH HOH . G 7 HOH A 2 302 5 HOH HOH . G 7 HOH A 3 303 18 HOH HOH . G 7 HOH A 4 304 31 HOH HOH . G 7 HOH A 5 305 33 HOH HOH . G 7 HOH A 6 306 21 HOH HOH . G 7 HOH A 7 307 20 HOH HOH . G 7 HOH A 8 308 32 HOH HOH . H 7 HOH H 1 301 16 HOH HOH . H 7 HOH H 2 302 8 HOH HOH . H 7 HOH H 3 303 2 HOH HOH . H 7 HOH H 4 304 40 HOH HOH . H 7 HOH H 5 305 3 HOH HOH . H 7 HOH H 6 306 7 HOH HOH . H 7 HOH H 7 307 35 HOH HOH . H 7 HOH H 8 308 19 HOH HOH . H 7 HOH H 9 309 37 HOH HOH . H 7 HOH H 10 310 6 HOH HOH . H 7 HOH H 11 311 4 HOH HOH . H 7 HOH H 12 312 13 HOH HOH . H 7 HOH H 13 313 17 HOH HOH . H 7 HOH H 14 314 38 HOH HOH . H 7 HOH H 15 315 34 HOH HOH . H 7 HOH H 16 316 39 HOH HOH . H 7 HOH H 17 317 1 HOH HOH . H 7 HOH H 18 318 15 HOH HOH . I 7 HOH L 1 301 14 HOH HOH . I 7 HOH L 2 302 27 HOH HOH . I 7 HOH L 3 303 12 HOH HOH . I 7 HOH L 4 304 26 HOH HOH . I 7 HOH L 5 305 23 HOH HOH . I 7 HOH L 6 306 10 HOH HOH . I 7 HOH L 7 307 25 HOH HOH . I 7 HOH L 8 308 11 HOH HOH . I 7 HOH L 9 309 36 HOH HOH . I 7 HOH L 10 310 22 HOH HOH . I 7 HOH L 11 311 29 HOH HOH . I 7 HOH L 12 312 28 HOH HOH . I 7 HOH L 13 313 30 HOH HOH . I 7 HOH L 14 314 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 98.439 _atom_site.Cartn_y 105.623 _atom_site.Cartn_z 108.902 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 103.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 218 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #