data_8VGU
#
_model_server_result.job_id            kWdeexZTFtgh1VRp5ySBTg 
_model_server_result.datetime_utc      '2025-02-01 20:55:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    8VGU 
#
_exptl.entry_id    8VGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              620.519 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Mesoheme 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.28 
_cell.angle_gamma         90 
_cell.entry_id            8VGU 
_cell.length_a            53.523 
_cell.length_b            46.983 
_cell.length_c            67.853 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C FE MH0 . A MH0 201 1_555 G O1 OXY . A OXY 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc2 C FE MH0 . A MH0 201 1_555 O O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc3 H FE MH0 . B MH0 201 1_555 N O2 OXY . B OXY 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc4 H FE MH0 . B MH0 201 1_555 P O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
#
_chem_comp.formula           'C34 H36 Fe N4 O4' 
_chem_comp.formula_weight    620.519 
_chem_comp.id                MH0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Mesoheme 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBB CAB MH0 sing 237 n n 
CAB C3B MH0 sing 238 n n 
CMB C2B MH0 sing 239 n n 
C3B C2B MH0 doub 240 n n 
C3B C4B MH0 sing 241 n n 
C2B C1B MH0 sing 242 n n 
C4B CHC MH0 sing 243 n n 
C4B NB MH0 doub 244 n n 
CHC C1C MH0 doub 245 n n 
C1B NB MH0 sing 246 n n 
C1B CHB MH0 doub 247 n n 
CMC C2C MH0 sing 248 n n 
C1C C2C MH0 sing 249 n n 
C1C NC MH0 sing 250 n n 
NB FE MH0 sing 251 n n 
CBC CAC MH0 sing 252 n n 
CHB C4A MH0 sing 253 n n 
C2C C3C MH0 doub 254 n n 
NC FE MH0 sing 255 n n 
NC C4C MH0 doub 256 n n 
C3C C4C MH0 sing 257 n n 
C3C CAC MH0 sing 258 n n 
FE NA MH0 sing 259 n n 
FE ND MH0 sing 260 n n 
C4C CHD MH0 sing 261 n n 
C4A NA MH0 doub 262 n n 
C4A C3A MH0 sing 263 n n 
CHD C1D MH0 doub 264 n n 
NA C1A MH0 sing 265 n n 
CMA C3A MH0 sing 266 n n 
C3A C2A MH0 doub 267 n n 
ND C1D MH0 sing 268 n n 
ND C4D MH0 doub 269 n n 
C1D C2D MH0 sing 270 n n 
C1A C2A MH0 sing 271 n n 
C1A CHA MH0 doub 272 n n 
C2A CAA MH0 sing 273 n n 
C4D CHA MH0 sing 274 n n 
C4D C3D MH0 sing 275 n n 
C2D CMD MH0 sing 276 n n 
C2D C3D MH0 doub 277 n n 
C3D CAD MH0 sing 278 n n 
CAA CBA MH0 sing 279 n n 
CAD CBD MH0 sing 280 n n 
CBA CGA MH0 sing 281 n n 
CBD CGD MH0 sing 282 n n 
O1A CGA MH0 doub 283 n n 
CGA O2A MH0 sing 284 n n 
CGD O2D MH0 doub 285 n n 
CGD O1D MH0 sing 286 n n 
CHA H1 MH0 sing 287 n n 
CHB H2 MH0 sing 288 n n 
CHC H3 MH0 sing 289 n n 
CHD H4 MH0 sing 290 n n 
CMA H5 MH0 sing 291 n n 
CMA H6 MH0 sing 292 n n 
CMA H7 MH0 sing 293 n n 
CAA H8 MH0 sing 294 n n 
CAA H9 MH0 sing 295 n n 
CBA H10 MH0 sing 296 n n 
CBA H11 MH0 sing 297 n n 
O2A H12 MH0 sing 298 n n 
CMB H13 MH0 sing 299 n n 
CMB H14 MH0 sing 300 n n 
CMB H15 MH0 sing 301 n n 
CAB H16 MH0 sing 302 n n 
CAB H17 MH0 sing 303 n n 
CBB H18 MH0 sing 304 n n 
CBB H19 MH0 sing 305 n n 
CBB H20 MH0 sing 306 n n 
CMC H21 MH0 sing 307 n n 
CMC H22 MH0 sing 308 n n 
CMC H23 MH0 sing 309 n n 
CAC H24 MH0 sing 310 n n 
CAC H25 MH0 sing 311 n n 
CBC H26 MH0 sing 312 n n 
CBC H27 MH0 sing 313 n n 
CBC H28 MH0 sing 314 n n 
CMD H29 MH0 sing 315 n n 
CMD H30 MH0 sing 316 n n 
CMD H31 MH0 sing 317 n n 
CAD H32 MH0 sing 318 n n 
CAD H33 MH0 sing 319 n n 
CBD H34 MH0 sing 320 n n 
CBD H35 MH0 sing 321 n n 
O1D H36 MH0 sing 322 n n 
#
_atom_sites.entry_id                     8VGU 
_atom_sites.fract_transf_matrix[1][1]    0.018684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000744 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021284 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014749 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MH0 A 1 201 2 MH0 HEM . 
D 3 MPG A 1 202 1 MPG MPG . 
E 3 MPG A 1 203 4 MPG MPG . 
F 3 MPG A 1 204 8 MPG MPG . 
G 4 OXY A 1 205 1143 OXY OXY . 
H 2 MH0 B 1 201 1 MH0 HEM . 
I 3 MPG B 1 202 2 MPG MPG . 
J 3 MPG B 1 203 3 MPG MPG . 
K 3 MPG B 1 204 5 MPG MPG . 
L 3 MPG B 1 205 7 MPG MPG . 
M 3 MPG B 1 206 9 MPG MPG . 
N 4 OXY B 1 207 1144 OXY OXY . 
O 5 HOH A 1 301 21 HOH HOH . 
O 5 HOH A 2 302 19 HOH HOH . 
O 5 HOH A 3 303 15 HOH HOH . 
O 5 HOH A 4 304 6 HOH HOH . 
O 5 HOH A 5 305 4 HOH HOH . 
O 5 HOH A 6 306 13 HOH HOH . 
O 5 HOH A 7 307 3 HOH HOH . 
O 5 HOH A 8 308 2 HOH HOH . 
O 5 HOH A 9 309 9 HOH HOH . 
O 5 HOH A 10 310 43 HOH HOH . 
O 5 HOH A 11 311 39 HOH HOH . 
O 5 HOH A 12 312 1 HOH HOH . 
O 5 HOH A 13 313 14 HOH HOH . 
O 5 HOH A 14 314 16 HOH HOH . 
O 5 HOH A 15 315 24 HOH HOH . 
O 5 HOH A 16 316 62 HOH HOH . 
O 5 HOH A 17 317 18 HOH HOH . 
O 5 HOH A 18 318 8 HOH HOH . 
O 5 HOH A 19 319 7 HOH HOH . 
O 5 HOH A 20 320 64 HOH HOH . 
O 5 HOH A 21 321 37 HOH HOH . 
O 5 HOH A 22 322 25 HOH HOH . 
O 5 HOH A 23 323 49 HOH HOH . 
O 5 HOH A 24 324 32 HOH HOH . 
O 5 HOH A 25 325 48 HOH HOH . 
O 5 HOH A 26 326 34 HOH HOH . 
O 5 HOH A 27 327 45 HOH HOH . 
O 5 HOH A 28 328 63 HOH HOH . 
O 5 HOH A 29 329 56 HOH HOH . 
O 5 HOH A 30 330 31 HOH HOH . 
O 5 HOH A 31 331 27 HOH HOH . 
O 5 HOH A 32 332 30 HOH HOH . 
O 5 HOH A 33 333 23 HOH HOH . 
P 5 HOH B 1 301 59 HOH HOH . 
P 5 HOH B 2 302 28 HOH HOH . 
P 5 HOH B 3 303 52 HOH HOH . 
P 5 HOH B 4 304 11 HOH HOH . 
P 5 HOH B 5 305 5 HOH HOH . 
P 5 HOH B 6 306 42 HOH HOH . 
P 5 HOH B 7 307 10 HOH HOH . 
P 5 HOH B 8 308 46 HOH HOH . 
P 5 HOH B 9 309 35 HOH HOH . 
P 5 HOH B 10 310 40 HOH HOH . 
P 5 HOH B 11 311 20 HOH HOH . 
P 5 HOH B 12 312 44 HOH HOH . 
P 5 HOH B 13 313 12 HOH HOH . 
P 5 HOH B 14 314 17 HOH HOH . 
P 5 HOH B 15 315 26 HOH HOH . 
P 5 HOH B 16 316 36 HOH HOH . 
P 5 HOH B 17 317 54 HOH HOH . 
P 5 HOH B 18 318 58 HOH HOH . 
P 5 HOH B 19 319 61 HOH HOH . 
P 5 HOH B 20 320 33 HOH HOH . 
P 5 HOH B 21 321 53 HOH HOH . 
P 5 HOH B 22 322 55 HOH HOH . 
P 5 HOH B 23 323 57 HOH HOH . 
P 5 HOH B 24 324 29 HOH HOH . 
P 5 HOH B 25 325 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA MH0 . . . H 2 -14.295 -0.196 30.45 1 42.74 ? CHA MH0 201 B 1 
HETATM 2 C CHB MH0 . . . H 2 -16.713 2.844 33.329 1 38.27 ? CHB MH0 201 B 1 
HETATM 3 C CHC MH0 . . . H 2 -13.068 2.677 36.482 1 43.68 ? CHC MH0 201 B 1 
HETATM 4 C CHD MH0 . . . H 2 -10.258 0.506 33.163 1 36.8 ? CHD MH0 201 B 1 
HETATM 5 C C1A MH0 . . . H 2 -15.329 0.467 31.069 1 41.41 ? C1A MH0 201 B 1 
HETATM 6 C C2A MH0 . . . H 2 -16.753 0.272 30.858 1 42.15 ? C2A MH0 201 B 1 
HETATM 7 C C3A MH0 . . . H 2 -17.41 1.112 31.655 1 40.44 ? C3A MH0 201 B 1 
HETATM 8 C C4A MH0 . . . H 2 -16.436 1.875 32.397 1 39.01 ? C4A MH0 201 B 1 
HETATM 9 C CMA MH0 . . . H 2 -18.943 1.252 31.763 1 41.6 ? CMA MH0 201 B 1 
HETATM 10 C CAA MH0 . . . H 2 -17.444 -0.725 29.902 1 50.13 ? CAA MH0 201 B 1 
HETATM 11 C CBA MH0 . . . H 2 -16.927 -0.628 28.474 1 49.2 ? CBA MH0 201 B 1 
HETATM 12 C CGA MH0 . . . H 2 -16.895 -2.031 27.932 1 62.36 ? CGA MH0 201 B 1 
HETATM 13 O O1A MH0 . . . H 2 -16.001 -2.816 28.351 1 65.1 ? O1A MH0 201 B 1 
HETATM 14 O O2A MH0 . . . H 2 -17.769 -2.366 27.092 1 54.14 ? O2A MH0 201 B 1 
HETATM 15 C C1B MH0 . . . H 2 -15.961 3.047 34.458 1 37.21 ? C1B MH0 201 B 1 
HETATM 16 C C2B MH0 . . . H 2 -16.363 3.817 35.616 1 39.56 ? C2B MH0 201 B 1 
HETATM 17 C C3B MH0 . . . H 2 -15.345 3.776 36.505 1 31.89 ? C3B MH0 201 B 1 
HETATM 18 C C4B MH0 . . . H 2 -14.289 2.972 35.91 1 42.37 ? C4B MH0 201 B 1 
HETATM 19 C CMB MH0 . . . H 2 -17.745 4.512 35.677 1 36.94 ? CMB MH0 201 B 1 
HETATM 20 C CAB MH0 . . . H 2 -15.165 4.393 37.919 1 41.09 ? CAB MH0 201 B 1 
HETATM 21 C CBB MH0 . . . H 2 -16.09 5.095 38.587 1 47.92 ? CBB MH0 201 B 1 
HETATM 22 C C1C MH0 . . . H 2 -11.964 2.163 35.832 1 40.04 ? C1C MH0 201 B 1 
HETATM 23 C C2C MH0 . . . H 2 -10.61 2.203 36.332 1 36.46 ? C2C MH0 201 B 1 
HETATM 24 C C3C MH0 . . . H 2 -9.806 1.608 35.444 1 38.64 ? C3C MH0 201 B 1 
HETATM 25 C C4C MH0 . . . H 2 -10.636 1.167 34.321 1 37.03 ? C4C MH0 201 B 1 
HETATM 26 C CMC MH0 . . . H 2 -10.195 2.829 37.682 1 43.07 ? CMC MH0 201 B 1 
HETATM 27 C CAC MH0 . . . H 2 -8.275 1.475 35.666 1 43.69 ? CAC MH0 201 B 1 
HETATM 28 C CBC MH0 . . . H 2 -7.473 0.767 34.864 1 48.07 ? CBC MH0 201 B 1 
HETATM 29 C C1D MH0 . . . H 2 -11.069 0.163 32.098 1 39.6 ? C1D MH0 201 B 1 
HETATM 30 C C2D MH0 . . . H 2 -10.603 -0.373 30.837 1 40.78 ? C2D MH0 201 B 1 
HETATM 31 C C3D MH0 . . . H 2 -11.867 -0.592 29.988 1 39.85 ? C3D MH0 201 B 1 
HETATM 32 C C4D MH0 . . . H 2 -12.966 -0.166 30.822 1 41.44 ? C4D MH0 201 B 1 
HETATM 33 C CMD MH0 . . . H 2 -9.137 -0.659 30.448 1 42.63 ? CMD MH0 201 B 1 
HETATM 34 C CAD MH0 . . . H 2 -11.986 -1.134 28.546 1 46.64 ? CAD MH0 201 B 1 
HETATM 35 C CBD MH0 . . . H 2 -11.437 -2.548 28.435 1 50.72 ? CBD MH0 201 B 1 
HETATM 36 C CGD MH0 . . . H 2 -11.5 -2.984 26.993 1 64.95 ? CGD MH0 201 B 1 
HETATM 37 O O1D MH0 . . . H 2 -12.092 -2.242 26.163 1 57.77 ? O1D MH0 201 B 1 
HETATM 38 O O2D MH0 . . . H 2 -10.959 -4.075 26.672 1 75.81 ? O2D MH0 201 B 1 
HETATM 39 N NA MH0 . . . H 2 -15.173 1.454 32.021 1 46.98 ? NA MH0 201 B 1 
HETATM 40 N NB MH0 . . . H 2 -14.695 2.547 34.665 1 38.92 ? NB MH0 201 B 1 
HETATM 41 N NC MH0 . . . H 2 -11.941 1.525 34.607 1 40.9 ? NC MH0 201 B 1 
HETATM 42 N ND MH0 . . . H 2 -12.457 0.267 32.043 1 45.46 ? ND MH0 201 B 1 
HETATM 43 FE FE MH0 . . . H 2 -13.537 1.424 33.328 1 35.19 ? FE MH0 201 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#