data_8VGU # _model_server_result.job_id cn4bZgoBQ_HgLMRLF_KDeQ _model_server_result.datetime_utc '2025-02-01 20:54:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 8VGU # _exptl.entry_id 8VGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.28 _cell.angle_gamma 90 _cell.entry_id 8VGU _cell.length_a 53.523 _cell.length_b 46.983 _cell.length_c 67.853 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C FE MH0 . A MH0 201 1_555 G O1 OXY . A OXY 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 C FE MH0 . A MH0 201 1_555 O O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 H FE MH0 . B MH0 201 1_555 N O2 OXY . B OXY 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 H FE MH0 . B MH0 201 1_555 P O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 323 n n C2 C1 MPG sing 324 n n C3 C4 MPG sing 325 n n C4 C5 MPG sing 326 n n C5 C6 MPG sing 327 n n C6 C7 MPG sing 328 n n C7 C8 MPG sing 329 n n C8 C9 MPG sing 330 n n C9 C10 MPG doub 331 z n C10 C11 MPG sing 332 n n C11 C12 MPG sing 333 n n C12 C13 MPG sing 334 n n C13 C14 MPG sing 335 n n C14 C15 MPG sing 336 n n C15 C16 MPG sing 337 n n C16 C17 MPG sing 338 n n C17 C18 MPG sing 339 n n O1 C1 MPG sing 340 n n O1 CX3 MPG sing 341 n n CXD O2 MPG sing 342 n n CXD C21 MPG sing 343 n n CXD CX3 MPG sing 344 n n C21 O3 MPG sing 345 n n C2 H21C MPG sing 346 n n C2 H22C MPG sing 347 n n C3 H31C MPG sing 348 n n C3 H32C MPG sing 349 n n CX3 O4 MPG doub 350 n n C4 H41C MPG sing 351 n n C4 H42C MPG sing 352 n n C5 H51C MPG sing 353 n n C5 H52C MPG sing 354 n n C6 H61C MPG sing 355 n n C6 H62C MPG sing 356 n n C7 H71C MPG sing 357 n n C7 H72C MPG sing 358 n n C8 H81C MPG sing 359 n n C8 H82C MPG sing 360 n n C9 H9 MPG sing 361 n n C10 H10 MPG sing 362 n n C11 H111 MPG sing 363 n n C11 H112 MPG sing 364 n n C12 H121 MPG sing 365 n n C12 H122 MPG sing 366 n n C13 H131 MPG sing 367 n n C13 H132 MPG sing 368 n n C14 H141 MPG sing 369 n n C14 H142 MPG sing 370 n n C15 H151 MPG sing 371 n n C15 H152 MPG sing 372 n n C16 H161 MPG sing 373 n n C16 H162 MPG sing 374 n n C17 H171 MPG sing 375 n n C17 H172 MPG sing 376 n n C18 H181 MPG sing 377 n n C18 H182 MPG sing 378 n n C18 H183 MPG sing 379 n n C1 HX31 MPG sing 380 n n C1 HX32 MPG sing 381 n n CXD HXD MPG sing 382 n n O2 H2 MPG sing 383 n n C21 H211 MPG sing 384 n n C21 H212 MPG sing 385 n n O3 H3 MPG sing 386 n n # _atom_sites.entry_id 8VGU _atom_sites.fract_transf_matrix[1][1] 0.018684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000744 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MH0 A 1 201 2 MH0 HEM . D 3 MPG A 1 202 1 MPG MPG . E 3 MPG A 1 203 4 MPG MPG . F 3 MPG A 1 204 8 MPG MPG . G 4 OXY A 1 205 1143 OXY OXY . H 2 MH0 B 1 201 1 MH0 HEM . I 3 MPG B 1 202 2 MPG MPG . J 3 MPG B 1 203 3 MPG MPG . K 3 MPG B 1 204 5 MPG MPG . L 3 MPG B 1 205 7 MPG MPG . M 3 MPG B 1 206 9 MPG MPG . N 4 OXY B 1 207 1144 OXY OXY . O 5 HOH A 1 301 21 HOH HOH . O 5 HOH A 2 302 19 HOH HOH . O 5 HOH A 3 303 15 HOH HOH . O 5 HOH A 4 304 6 HOH HOH . O 5 HOH A 5 305 4 HOH HOH . O 5 HOH A 6 306 13 HOH HOH . O 5 HOH A 7 307 3 HOH HOH . O 5 HOH A 8 308 2 HOH HOH . O 5 HOH A 9 309 9 HOH HOH . O 5 HOH A 10 310 43 HOH HOH . O 5 HOH A 11 311 39 HOH HOH . O 5 HOH A 12 312 1 HOH HOH . O 5 HOH A 13 313 14 HOH HOH . O 5 HOH A 14 314 16 HOH HOH . O 5 HOH A 15 315 24 HOH HOH . O 5 HOH A 16 316 62 HOH HOH . O 5 HOH A 17 317 18 HOH HOH . O 5 HOH A 18 318 8 HOH HOH . O 5 HOH A 19 319 7 HOH HOH . O 5 HOH A 20 320 64 HOH HOH . O 5 HOH A 21 321 37 HOH HOH . O 5 HOH A 22 322 25 HOH HOH . O 5 HOH A 23 323 49 HOH HOH . O 5 HOH A 24 324 32 HOH HOH . O 5 HOH A 25 325 48 HOH HOH . O 5 HOH A 26 326 34 HOH HOH . O 5 HOH A 27 327 45 HOH HOH . O 5 HOH A 28 328 63 HOH HOH . O 5 HOH A 29 329 56 HOH HOH . O 5 HOH A 30 330 31 HOH HOH . O 5 HOH A 31 331 27 HOH HOH . O 5 HOH A 32 332 30 HOH HOH . O 5 HOH A 33 333 23 HOH HOH . P 5 HOH B 1 301 59 HOH HOH . P 5 HOH B 2 302 28 HOH HOH . P 5 HOH B 3 303 52 HOH HOH . P 5 HOH B 4 304 11 HOH HOH . P 5 HOH B 5 305 5 HOH HOH . P 5 HOH B 6 306 42 HOH HOH . P 5 HOH B 7 307 10 HOH HOH . P 5 HOH B 8 308 46 HOH HOH . P 5 HOH B 9 309 35 HOH HOH . P 5 HOH B 10 310 40 HOH HOH . P 5 HOH B 11 311 20 HOH HOH . P 5 HOH B 12 312 44 HOH HOH . P 5 HOH B 13 313 12 HOH HOH . P 5 HOH B 14 314 17 HOH HOH . P 5 HOH B 15 315 26 HOH HOH . P 5 HOH B 16 316 36 HOH HOH . P 5 HOH B 17 317 54 HOH HOH . P 5 HOH B 18 318 58 HOH HOH . P 5 HOH B 19 319 61 HOH HOH . P 5 HOH B 20 320 33 HOH HOH . P 5 HOH B 21 321 53 HOH HOH . P 5 HOH B 22 322 55 HOH HOH . P 5 HOH B 23 323 57 HOH HOH . P 5 HOH B 24 324 29 HOH HOH . P 5 HOH B 25 325 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . D 3 11.584 17.524 59.527 1 36.4 ? C2 MPG 202 A 1 HETATM 2 C C3 MPG . . . D 3 10.267 17.345 60.334 1 33.46 ? C3 MPG 202 A 1 HETATM 3 C C4 MPG . . . D 3 10.392 17.743 61.835 1 31.82 ? C4 MPG 202 A 1 HETATM 4 C C5 MPG . . . D 3 9.24 16.995 62.622 1 35.25 ? C5 MPG 202 A 1 HETATM 5 C C6 MPG . . . D 3 9.1 17.561 64.054 1 36.18 ? C6 MPG 202 A 1 HETATM 6 C C7 MPG . . . D 3 7.735 17.106 64.655 1 40.17 ? C7 MPG 202 A 1 HETATM 7 C C8 MPG . . . D 3 7.94 16.25 65.906 1 46.58 ? C8 MPG 202 A 1 HETATM 8 C C9 MPG . . . D 3 6.544 15.769 66.4 1 41.1 ? C9 MPG 202 A 1 HETATM 9 C C10 MPG . . . D 3 6.406 14.947 67.503 1 36.25 ? C10 MPG 202 A 1 HETATM 10 C C11 MPG . . . D 3 7.641 14.462 68.321 1 39.95 ? C11 MPG 202 A 1 HETATM 11 C C12 MPG . . . D 3 7.185 14.056 69.691 1 26.64 ? C12 MPG 202 A 1 HETATM 12 C C13 MPG . . . D 3 8.134 13.016 70.311 1 31.63 ? C13 MPG 202 A 1 HETATM 13 C C14 MPG . . . D 3 9.255 13.73 71.104 1 37.86 ? C14 MPG 202 A 1 HETATM 14 C C15 MPG . . . D 3 9.904 12.751 72.076 1 35.07 ? C15 MPG 202 A 1 HETATM 15 C C16 MPG . . . D 3 11.33 13.276 72.48 1 35.19 ? C16 MPG 202 A 1 HETATM 16 C C1 MPG . . . D 3 12.786 16.929 60.257 1 39.19 ? C1 MPG 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 427 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #