data_8VGU # _model_server_result.job_id CMPrYGwkn2aq2uRfpum_lw _model_server_result.datetime_utc '2025-02-01 20:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":207}' # _entry.id 8VGU # _exptl.entry_id 8VGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.28 _cell.angle_gamma 90 _cell.entry_id 8VGU _cell.length_a 53.523 _cell.length_b 46.983 _cell.length_c 67.853 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C FE MH0 . A MH0 201 1_555 G O1 OXY . A OXY 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 C FE MH0 . A MH0 201 1_555 O O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 H FE MH0 . B MH0 201 1_555 N O2 OXY . B OXY 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 H FE MH0 . B MH0 201 1_555 P O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 387 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 8VGU _atom_sites.fract_transf_matrix[1][1] 0.018684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000744 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MH0 A 1 201 2 MH0 HEM . D 3 MPG A 1 202 1 MPG MPG . E 3 MPG A 1 203 4 MPG MPG . F 3 MPG A 1 204 8 MPG MPG . G 4 OXY A 1 205 1143 OXY OXY . H 2 MH0 B 1 201 1 MH0 HEM . I 3 MPG B 1 202 2 MPG MPG . J 3 MPG B 1 203 3 MPG MPG . K 3 MPG B 1 204 5 MPG MPG . L 3 MPG B 1 205 7 MPG MPG . M 3 MPG B 1 206 9 MPG MPG . N 4 OXY B 1 207 1144 OXY OXY . O 5 HOH A 1 301 21 HOH HOH . O 5 HOH A 2 302 19 HOH HOH . O 5 HOH A 3 303 15 HOH HOH . O 5 HOH A 4 304 6 HOH HOH . O 5 HOH A 5 305 4 HOH HOH . O 5 HOH A 6 306 13 HOH HOH . O 5 HOH A 7 307 3 HOH HOH . O 5 HOH A 8 308 2 HOH HOH . O 5 HOH A 9 309 9 HOH HOH . O 5 HOH A 10 310 43 HOH HOH . O 5 HOH A 11 311 39 HOH HOH . O 5 HOH A 12 312 1 HOH HOH . O 5 HOH A 13 313 14 HOH HOH . O 5 HOH A 14 314 16 HOH HOH . O 5 HOH A 15 315 24 HOH HOH . O 5 HOH A 16 316 62 HOH HOH . O 5 HOH A 17 317 18 HOH HOH . O 5 HOH A 18 318 8 HOH HOH . O 5 HOH A 19 319 7 HOH HOH . O 5 HOH A 20 320 64 HOH HOH . O 5 HOH A 21 321 37 HOH HOH . O 5 HOH A 22 322 25 HOH HOH . O 5 HOH A 23 323 49 HOH HOH . O 5 HOH A 24 324 32 HOH HOH . O 5 HOH A 25 325 48 HOH HOH . O 5 HOH A 26 326 34 HOH HOH . O 5 HOH A 27 327 45 HOH HOH . O 5 HOH A 28 328 63 HOH HOH . O 5 HOH A 29 329 56 HOH HOH . O 5 HOH A 30 330 31 HOH HOH . O 5 HOH A 31 331 27 HOH HOH . O 5 HOH A 32 332 30 HOH HOH . O 5 HOH A 33 333 23 HOH HOH . P 5 HOH B 1 301 59 HOH HOH . P 5 HOH B 2 302 28 HOH HOH . P 5 HOH B 3 303 52 HOH HOH . P 5 HOH B 4 304 11 HOH HOH . P 5 HOH B 5 305 5 HOH HOH . P 5 HOH B 6 306 42 HOH HOH . P 5 HOH B 7 307 10 HOH HOH . P 5 HOH B 8 308 46 HOH HOH . P 5 HOH B 9 309 35 HOH HOH . P 5 HOH B 10 310 40 HOH HOH . P 5 HOH B 11 311 20 HOH HOH . P 5 HOH B 12 312 44 HOH HOH . P 5 HOH B 13 313 12 HOH HOH . P 5 HOH B 14 314 17 HOH HOH . P 5 HOH B 15 315 26 HOH HOH . P 5 HOH B 16 316 36 HOH HOH . P 5 HOH B 17 317 54 HOH HOH . P 5 HOH B 18 318 58 HOH HOH . P 5 HOH B 19 319 61 HOH HOH . P 5 HOH B 20 320 33 HOH HOH . P 5 HOH B 21 321 53 HOH HOH . P 5 HOH B 22 322 55 HOH HOH . P 5 HOH B 23 323 57 HOH HOH . P 5 HOH B 24 324 29 HOH HOH . P 5 HOH B 25 325 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . N 4 -13.616 -0.463 35.961 1 44.91 ? O1 OXY 207 B 1 HETATM 2 O O2 OXY . . . N 4 -13.794 0.192 34.962 1 40.93 ? O2 OXY 207 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #