data_8VH4
#
_model_server_result.job_id            Dfg4gLnNTijEMsSSwLhUeA 
_model_server_result.datetime_utc      '2024-10-09 23:28:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vh4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    8VH4 
#
_exptl.entry_id    8VH4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VH4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 21 B THR 56 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc2 E MG MG . B MG 301 1_555 F O2G GNP . B GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc3 E MG MG . B MG 301 1_555 F O2B GNP . B GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc4 E MG MG . B MG 301 1_555 F O1A GNP . B GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 224 n n 
PG O2G GNP sing 225 n n 
PG O3G GNP sing 226 n n 
PG N3B GNP sing 227 n n 
O2G HOG2 GNP sing 228 n n 
O3G HOG3 GNP sing 229 n n 
N3B PB GNP sing 230 n n 
N3B HNB3 GNP sing 231 n n 
PB O1B GNP doub 232 n n 
PB O2B GNP sing 233 n n 
PB O3A GNP sing 234 n n 
O2B HOB2 GNP sing 235 n n 
O3A PA GNP sing 236 n n 
PA O1A GNP doub 237 n n 
PA O2A GNP sing 238 n n 
PA O5' GNP sing 239 n n 
O2A HOA2 GNP sing 240 n n 
O5' C5' GNP sing 241 n n 
C5' C4' GNP sing 242 n n 
C5' "H5'2" GNP sing 243 n n 
C5' "H5'1" GNP sing 244 n n 
C4' O4' GNP sing 245 n n 
C4' C3' GNP sing 246 n n 
C4' H4' GNP sing 247 n n 
O4' C1' GNP sing 248 n n 
C3' O3' GNP sing 249 n n 
C3' C2' GNP sing 250 n n 
C3' H3' GNP sing 251 n n 
O3' HO3' GNP sing 252 n n 
C2' O2' GNP sing 253 n n 
C2' C1' GNP sing 254 n n 
C2' H2' GNP sing 255 n n 
O2' HO2' GNP sing 256 n n 
C1' N9 GNP sing 257 n n 
C1' H1' GNP sing 258 n n 
N9 C8 GNP sing 259 n y 
N9 C4 GNP sing 260 n y 
C8 N7 GNP doub 261 n y 
C8 H8 GNP sing 262 n n 
N7 C5 GNP sing 263 n y 
C5 C6 GNP sing 264 n y 
C5 C4 GNP doub 265 n y 
C6 O6 GNP doub 266 n n 
C6 N1 GNP sing 267 n y 
N1 C2 GNP sing 268 n y 
N1 HN1 GNP sing 269 n n 
C2 N2 GNP sing 270 n n 
C2 N3 GNP doub 271 n y 
N2 HN21 GNP sing 272 n n 
N2 HN22 GNP sing 273 n n 
N3 C4 GNP sing 274 n y 
#
_atom_sites.entry_id                     8VH4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GDP A 1 2601 2601 GDP GDP . 
D 4 ANP A 1 2602 2602 ANP ANP . 
E 5 MG B 1 301 1 MG MG . 
F 6 GNP B 1 302 210 GNP GNP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . F 6 281.584 246.226 340.321 1 96.15 ? PG GNP 302 B 1 
HETATM 2 O O1G GNP . . . F 6 280.831 244.945 340.153 1 96.15 ? O1G GNP 302 B 1 
HETATM 3 O O2G GNP . . . F 6 280.811 247.153 341.252 1 96.15 ? O2G GNP 302 B 1 
HETATM 4 O O3G GNP . . . F 6 281.756 246.916 338.949 1 96.15 ? O3G GNP 302 B 1 
HETATM 5 N N3B GNP . . . F 6 283.119 245.884 340.966 1 96.15 ? N3B GNP 302 B 1 
HETATM 6 P PB GNP . . . F 6 284.406 246.697 340.38 1 96.15 ? PB GNP 302 B 1 
HETATM 7 O O1B GNP . . . F 6 284.771 246.141 339.03 1 96.15 ? O1B GNP 302 B 1 
HETATM 8 O O2B GNP . . . F 6 284.062 248.153 340.26 1 96.15 ? O2B GNP 302 B 1 
HETATM 9 O O3A GNP . . . F 6 285.656 246.544 341.421 1 96.15 ? O3A GNP 302 B 1 
HETATM 10 P PA GNP . . . F 6 285.498 247.019 342.92 1 96.15 ? PA GNP 302 B 1 
HETATM 11 O O1A GNP . . . F 6 284.004 246.988 343.225 1 96.15 ? O1A GNP 302 B 1 
HETATM 12 O O2A GNP . . . F 6 286.133 248.319 343.152 1 96.15 ? O2A GNP 302 B 1 
HETATM 13 O O5' GNP . . . F 6 286.255 245.905 343.726 1 96.15 ? O5' GNP 302 B 1 
HETATM 14 C C5' GNP . . . F 6 287.527 245.393 343.28 1 96.15 ? C5' GNP 302 B 1 
HETATM 15 C C4' GNP . . . F 6 288.531 245.555 344.393 1 96.15 ? C4' GNP 302 B 1 
HETATM 16 O O4' GNP . . . F 6 289.834 245.817 343.834 1 96.15 ? O4' GNP 302 B 1 
HETATM 17 C C3' GNP . . . F 6 288.273 246.724 345.332 1 96.15 ? C3' GNP 302 B 1 
HETATM 18 O O3' GNP . . . F 6 287.356 246.354 346.355 1 96.15 ? O3' GNP 302 B 1 
HETATM 19 C C2' GNP . . . F 6 289.668 247.005 345.892 1 96.15 ? C2' GNP 302 B 1 
HETATM 20 O O2' GNP . . . F 6 289.971 246.168 347.001 1 96.15 ? O2' GNP 302 B 1 
HETATM 21 C C1' GNP . . . F 6 290.572 246.662 344.703 1 96.15 ? C1' GNP 302 B 1 
HETATM 22 N N9 GNP . . . F 6 291.01 247.84 343.942 1 96.15 ? N9 GNP 302 B 1 
HETATM 23 C C8 GNP . . . F 6 290.265 248.587 343.072 1 96.15 ? C8 GNP 302 B 1 
HETATM 24 N N7 GNP . . . F 6 290.936 249.582 342.542 1 96.15 ? N7 GNP 302 B 1 
HETATM 25 C C5 GNP . . . F 6 292.198 249.478 343.1 1 96.15 ? C5 GNP 302 B 1 
HETATM 26 C C6 GNP . . . F 6 293.386 250.28 342.917 1 96.15 ? C6 GNP 302 B 1 
HETATM 27 O O6 GNP . . . F 6 293.519 251.263 342.192 1 96.15 ? O6 GNP 302 B 1 
HETATM 28 N N1 GNP . . . F 6 294.442 249.819 343.675 1 96.15 ? N1 GNP 302 B 1 
HETATM 29 C C2 GNP . . . F 6 294.398 248.737 344.511 1 96.15 ? C2 GNP 302 B 1 
HETATM 30 N N2 GNP . . . F 6 295.518 248.437 345.17 1 96.15 ? N2 GNP 302 B 1 
HETATM 31 N N3 GNP . . . F 6 293.309 247.991 344.69 1 96.15 ? N3 GNP 302 B 1 
HETATM 32 C C4 GNP . . . F 6 292.258 248.413 343.961 1 96.15 ? C4 GNP 302 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#